EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000160964	-	1029	-	ENSMUSP00000125703	224 (aa)	-	E0CZ50
ENSMUST00000159632	-	741	-	-	- (aa)	-	-
ENSMUST00000159851	-	820	-	-	- (aa)	-	-
ENSMUST00000041318	-	3101	XM_006530867	ENSMUSP00000036226	404 (aa)	XP_006530930	Q8BTG7
ENSMUST00000162578	-	916	-	ENSMUSP00000148590	109 (aa)	-	A0A1D5RM17
ENSMUST00000212160	-	678	-	ENSMUSP00000148779	197 (aa)	-	A0A1D5RMH3
ENSMUST00000080666	-	2738	-	ENSMUSP00000079495	339 (aa)	-	Q8BTG7
ENSMUST00000166358	-	2963	-	ENSMUSP00000131203	81 (aa)	-	E9Q168
ENSMUST00000160915	-	713	-	ENSMUSP00000148614	51 (aa)	-	A0A1D5RM37
ENSMUST00000073139	-	2966	-	ENSMUSP00000072883	352 (aa)	-	Q8BTG7
ENSMUST00000161314	-	505	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000036564	Ndrg4	98	63.582	ENSMUSG00000004558	Ndrg2	100	58.763	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	24048452.	IPI	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	17998568.24048452.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005789	endoplasmic reticulum membrane	-	ISO	Component
GO:0007165	signal transduction	21873635.	IBA	Process
GO:0007420	brain development	21873635.	IBA	Process
GO:0008542	visual learning	21636852.	IMP	Process
GO:0010642	negative regulation of platelet-derived growth factor receptor signaling pathway	-	ISO	Process
GO:0010976	positive regulation of neuron projection development	-	ISO	Process
GO:0014912	negative regulation of smooth muscle cell migration	-	ISO	Process
GO:0016323	basolateral plasma membrane	-	ISO	Component
GO:0031253	cell projection membrane	24048452.	IDA	Component
GO:0048278	vesicle docking	24048452.	IMP	Process
GO:0048662	negative regulation of smooth muscle cell proliferation	-	ISO	Process
GO:0060973	cell migration involved in heart development	24048452.	IMP	Process
GO:0070374	positive regulation of ERK1 and ERK2 cascade	21873635.	IBA	Process
GO:0070374	positive regulation of ERK1 and ERK2 cascade	-	ISO	Process
GO:2001135	regulation of endocytic recycling	24048452.	IMP	Process