EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000036733 (Gene tree)
Gene ID: 68035
Gene Symbol: Rbm42
Alias: 1700003D06Rik|3100004P22Rik
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 9319 bases
Position: chr7:30640999-30650317
Accession: 1915285
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000103776	RRM_1	PF00076.22	1.4e-17	1	1
ENSMUSP00000040005	RRM_1	PF00076.22	1.5e-17	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000108141	-	1526	-	ENSMUSP00000103776	449 (aa)	-	D3YYW8
ENSMUST00000042726	-	1784	-	ENSMUSP00000040005	478 (aa)	-	Q91V81
ENSMUST00000140550	-	1095	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000036733's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000036733's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000036733	Rbm42	99	97.083	ENSG00000126254	RBM42	100	100.000	Homo_sapiens
ENSMUSG00000036733	Rbm42	99	96.868	ENSAMEG00000000524	RBM42	100	96.868	Ailuropoda_melanoleuca
ENSMUSG00000036733	Rbm42	99	97.065	ENSANAG00000027537	RBM42	100	100.000	Aotus_nancymaae
ENSMUSG00000036733	Rbm42	99	96.855	ENSBTAG00000013440	RBM42	100	96.855	Bos_taurus
ENSMUSG00000036733	Rbm42	99	97.545	ENSCJAG00000010220	RBM42	100	100.000	Callithrix_jacchus
ENSMUSG00000036733	Rbm42	99	90.566	ENSCAFG00020018628	RBM42	96	100.000	Canis_lupus_dingo
ENSMUSG00000036733	Rbm42	99	96.875	ENSCHIG00000009518	RBM42	100	96.875	Capra_hircus
ENSMUSG00000036733	Rbm42	99	96.862	ENSTSYG00000014688	RBM42	100	100.000	Carlito_syrichta
ENSMUSG00000036733	Rbm42	81	98.446	ENSCAPG00000009566	RBM42	99	98.446	Cavia_aperea
ENSMUSG00000036733	Rbm42	99	97.118	ENSCPOG00000012365	RBM42	99	97.118	Cavia_porcellus
ENSMUSG00000036733	Rbm42	99	97.694	ENSCCAG00000034440	RBM42	100	100.000	Cebus_capucinus
ENSMUSG00000036733	Rbm42	99	97.059	ENSCATG00000041924	RBM42	100	100.000	Cercocebus_atys
ENSMUSG00000036733	Rbm42	99	96.674	ENSCLAG00000012865	RBM42	99	96.674	Chinchilla_lanigera
ENSMUSG00000036733	Rbm42	99	96.674	ENSCSAG00000004422	RBM42	100	96.674	Chlorocebus_sabaeus
ENSMUSG00000036733	Rbm42	99	88.397	ENSCANG00000030272	RBM42	100	88.397	Colobus_angolensis_palliatus
ENSMUSG00000036733	Rbm42	99	98.113	ENSCGRG00001018540	Rbm42	99	98.113	Cricetulus_griseus_chok1gshd
ENSMUSG00000036733	Rbm42	99	96.250	ENSDNOG00000037397	RBM42	100	96.250	Dasypus_novemcinctus
ENSMUSG00000036733	Rbm42	99	97.321	ENSDORG00000013001	Rbm42	99	97.321	Dipodomys_ordii
ENSMUSG00000036733	Rbm42	75	90.909	ENSETEG00000007878	RBM42	73	90.909	Echinops_telfairi
ENSMUSG00000036733	Rbm42	99	98.202	ENSEASG00005001074	RBM42	100	98.202	Equus_asinus_asinus
ENSMUSG00000036733	Rbm42	99	98.202	ENSECAG00000018215	RBM42	100	98.202	Equus_caballus
ENSMUSG00000036733	Rbm42	99	97.275	ENSFCAG00000006376	RBM42	100	100.000	Felis_catus
ENSMUSG00000036733	Rbm42	99	96.444	ENSFDAG00000007440	RBM42	99	96.444	Fukomys_damarensis
ENSMUSG00000036733	Rbm42	99	97.269	ENSGGOG00000009972	RBM42	100	100.000	Gorilla_gorilla
ENSMUSG00000036733	Rbm42	97	95.642	ENSHGLG00000008418	RBM42	99	95.536	Heterocephalus_glaber_female
ENSMUSG00000036733	Rbm42	97	95.642	ENSHGLG00100018667	RBM42	99	95.536	Heterocephalus_glaber_male
ENSMUSG00000036733	Rbm42	99	97.561	ENSSTOG00000013050	RBM42	99	97.561	Ictidomys_tridecemlineatus
ENSMUSG00000036733	Rbm42	99	97.982	ENSJJAG00000010421	Rbm42	99	97.982	Jaculus_jaculus
ENSMUSG00000036733	Rbm42	97	92.505	ENSLAFG00000014993	RBM42	100	93.542	Loxodonta_africana
ENSMUSG00000036733	Rbm42	99	97.059	ENSMFAG00000002758	RBM42	100	100.000	Macaca_fascicularis
ENSMUSG00000036733	Rbm42	100	96.659	ENSMMUG00000018954	RBM42	100	100.000	Macaca_mulatta
ENSMUSG00000036733	Rbm42	99	96.875	ENSMNEG00000030009	RBM42	100	100.000	Macaca_nemestrina
ENSMUSG00000036733	Rbm42	99	97.059	ENSMLEG00000036119	RBM42	100	100.000	Mandrillus_leucophaeus
ENSMUSG00000036733	Rbm42	99	97.904	ENSMICG00000009880	RBM42	100	100.000	Microcebus_murinus
ENSMUSG00000036733	Rbm42	99	98.113	ENSMOCG00000000405	Rbm42	99	98.113	Microtus_ochrogaster
ENSMUSG00000036733	Rbm42	100	100.000	MGP_CAROLIEiJ_G0029536	Rbm42	100	100.000	Mus_caroli
ENSMUSG00000036733	Rbm42	100	99.582	MGP_PahariEiJ_G0012770	Rbm42	100	99.582	Mus_pahari
ENSMUSG00000036733	Rbm42	100	100.000	MGP_SPRETEiJ_G0030632	Rbm42	100	100.000	Mus_spretus
ENSMUSG00000036733	Rbm42	99	97.321	ENSMPUG00000006288	RBM42	100	97.321	Mustela_putorius_furo
ENSMUSG00000036733	Rbm42	99	96.017	ENSMLUG00000011334	RBM42	100	96.017	Myotis_lucifugus
ENSMUSG00000036733	Rbm42	99	96.855	ENSNGAG00000019698	Rbm42	99	96.855	Nannospalax_galili
ENSMUSG00000036733	Rbm42	70	98.802	ENSNLEG00000011272	-	94	91.899	Nomascus_leucogenys
ENSMUSG00000036733	Rbm42	95	83.224	ENSMEUG00000016300	RBM42	100	84.310	Notamacropus_eugenii
ENSMUSG00000036733	Rbm42	99	93.082	ENSOPRG00000001229	RBM42	100	91.405	Ochotona_princeps
ENSMUSG00000036733	Rbm42	99	96.674	ENSODEG00000013705	RBM42	99	96.674	Octodon_degus
ENSMUSG00000036733	Rbm42	99	96.452	ENSOCUG00000003337	RBM42	100	96.452	Oryctolagus_cuniculus
ENSMUSG00000036733	Rbm42	99	96.436	ENSOGAG00000004144	RBM42	100	96.436	Otolemur_garnettii
ENSMUSG00000036733	Rbm42	97	88.437	ENSOARG00000004926	RBM42	99	91.232	Ovis_aries
ENSMUSG00000036733	Rbm42	99	97.484	ENSPPAG00000037315	RBM42	100	100.000	Pan_paniscus
ENSMUSG00000036733	Rbm42	99	97.275	ENSPPRG00000016784	RBM42	100	100.000	Panthera_pardus
ENSMUSG00000036733	Rbm42	99	96.855	ENSPTIG00000019270	RBM42	100	100.000	Panthera_tigris_altaica
ENSMUSG00000036733	Rbm42	99	97.269	ENSPTRG00000010852	RBM42	100	100.000	Pan_troglodytes
ENSMUSG00000036733	Rbm42	99	97.257	ENSPANG00000017032	RBM42	100	100.000	Papio_anubis
ENSMUSG00000036733	Rbm42	99	99.161	ENSPEMG00000012065	Rbm42	99	99.161	Peromyscus_maniculatus_bairdii
ENSMUSG00000036733	Rbm42	99	96.082	ENSPPYG00000009871	RBM42	100	96.082	Pongo_abelii
ENSMUSG00000036733	Rbm42	88	96.066	ENSPCAG00000013053	RBM42	100	83.857	Procavia_capensis
ENSMUSG00000036733	Rbm42	70	99.099	ENSPCOG00000020672	RBM42	81	99.099	Propithecus_coquereli
ENSMUSG00000036733	Rbm42	99	97.904	ENSPCOG00000026433	-	100	100.000	Propithecus_coquereli
ENSMUSG00000036733	Rbm42	99	96.855	ENSPVAG00000012815	RBM42	100	96.855	Pteropus_vampyrus
ENSMUSG00000036733	Rbm42	100	99.372	ENSRNOG00000024278	Rbm42	100	99.372	Rattus_norvegicus
ENSMUSG00000036733	Rbm42	99	97.059	ENSRBIG00000007566	RBM42	100	100.000	Rhinopithecus_bieti
ENSMUSG00000036733	Rbm42	99	97.484	ENSRROG00000042313	RBM42	100	100.000	Rhinopithecus_roxellana
ENSMUSG00000036733	Rbm42	85	98.522	ENSSBOG00000030666	RBM42	100	98.522	Saimiri_boliviensis_boliviensis
ENSMUSG00000036733	Rbm42	99	87.292	ENSSARG00000010724	RBM42	100	87.292	Sorex_araneus
ENSMUSG00000036733	Rbm42	99	96.652	ENSSSCG00000002905	RBM42	100	96.652	Sus_scrofa
ENSMUSG00000036733	Rbm42	99	97.065	ENSUAMG00000020711	RBM42	100	97.065	Ursus_americanus
ENSMUSG00000036733	Rbm42	99	97.065	ENSUMAG00000020223	RBM42	100	97.065	Ursus_maritimus
ENSMUSG00000036733	Rbm42	99	97.098	ENSVVUG00000015117	RBM42	100	97.098	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0048025	negative regulation of mRNA splicing, via spliceosome	23636947.	IMP	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component