EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000036752 (Gene tree)
Gene ID: 227613
Gene Symbol: Tubb4b
Alias: 4930542G03Rik|Tubb2c
Full Name: tubulin%2C beta 4B class IVB
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 2543
Position: chr2: 25222160-25224702
Accession: 1915472
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000145607	-	831	-	-	- (aa)	-	-
ENSMUST00000043584	-	1598	-	ENSMUSP00000042342	445 (aa)	-	P68372

Gene Model

Click here to download ENSMUSG00000036752's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04145	Phagosome	KEGG
mmu04540	Gap junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000036752's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000036752	Tubb4b	99	94.344	WBGene00006538	tbb-4	96	95.785	Caenorhabditis_elegans
ENSMUSG00000036752	Tubb4b	100	98.876	ENSDARG00000002344	tubb4b	100	98.876	Danio_rerio
ENSMUSG00000036752	Tubb4b	100	100.000	ENSG00000188229	TUBB4B	100	100.000	Homo_sapiens
ENSMUSG00000036752	Tubb4b	99	75.737	YFL037W	TUB2	93	77.049	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000226	microtubule cytoskeleton organization	21873635.	IBA	Process
GO:0000278	mitotic cell cycle	21873635.	IBA	Process
GO:0003725	double-stranded RNA binding	21266579.	ISO	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005200	structural constituent of cytoskeleton	21873635.	IBA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005525	GTP binding	3782288.	NAS	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005874	microtubule	21873635.	IBA	Component
GO:0005874	microtubule	-	ISO	Component
GO:0007017	microtubule-based process	21873635.	IBA	Process
GO:0007017	microtubule-based process	3782288.	NAS	Process
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0045298	tubulin complex	3782288.	NAS	Component