EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000036779 (Gene tree)
Gene ID: 214627
Gene Symbol: Tent4b
Alias: 5730445M16Rik|Papd5
Full Name: terminal nucleotidyltransferase 4B
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 60510 bases
Position: chr8:88199213-88259722
Accession: 1917820
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000067971	PAP_assoc	PF03828.19	2.7e-14	1	1
ENSMUSP00000112608	PAP_assoc	PF03828.19	3e-14	1	1
ENSMUSP00000112766	PAP_assoc	PF03828.19	3e-14	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000066748	-	4489	XM_017312653	ENSMUSP00000067971	637 (aa)	XP_017168142	F8WI26
ENSMUST00000154115	-	739	-	ENSMUSP00000120503	200 (aa)	-	F6UPY1
ENSMUST00000119033	-	4624	XM_006530830	ENSMUSP00000112766	680 (aa)	XP_006530893	E9QJT6
ENSMUST00000118952	-	4597	-	ENSMUSP00000112608	680 (aa)	-	E9QJT6
ENSMUST00000125043	-	696	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000036779's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000036779's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000036779	Tent4b	66	63.399	ENSMUSG00000034575	Tent4a	62	69.527

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000036779	Tent4b	93	93.681	ENSG00000121274	TENT4B	100	93.220	Homo_sapiens
ENSMUSG00000036779	Tent4b	97	59.287	ENSAPOG00000022376	tent4b	86	65.789	Acanthochromis_polyacanthus
ENSMUSG00000036779	Tent4b	96	92.226	ENSAMEG00000006535	TENT4B	95	94.053	Ailuropoda_melanoleuca
ENSMUSG00000036779	Tent4b	100	54.714	ENSACIG00000004518	tent4b	97	56.000	Amphilophus_citrinellus
ENSMUSG00000036779	Tent4b	100	58.832	ENSAOCG00000018117	tent4b	97	59.344	Amphiprion_ocellaris
ENSMUSG00000036779	Tent4b	100	59.058	ENSAPEG00000010518	tent4b	97	59.571	Amphiprion_percula
ENSMUSG00000036779	Tent4b	100	58.429	ENSATEG00000003179	tent4b	97	58.393	Anabas_testudineus
ENSMUSG00000036779	Tent4b	74	87.026	ENSAPLG00000014941	TENT4B	100	87.026	Anas_platyrhynchos
ENSMUSG00000036779	Tent4b	100	69.697	ENSACAG00000013952	TENT4B	97	68.293	Anolis_carolinensis
ENSMUSG00000036779	Tent4b	93	92.881	ENSANAG00000029197	TENT4B	100	93.051	Aotus_nancymaae
ENSMUSG00000036779	Tent4b	100	56.410	ENSACLG00000017633	tent4b	80	64.035	Astatotilapia_calliptera
ENSMUSG00000036779	Tent4b	100	58.874	ENSAMXG00000018932	tent4b	97	59.657	Astyanax_mexicanus
ENSMUSG00000036779	Tent4b	94	90.308	ENSBTAG00000007942	TENT4B	97	90.909	Bos_taurus
ENSMUSG00000036779	Tent4b	93	93.207	ENSCJAG00000001932	TENT4B	100	92.881	Callithrix_jacchus
ENSMUSG00000036779	Tent4b	93	93.375	ENSCAFG00000009938	TENT4B	100	92.140	Canis_familiaris
ENSMUSG00000036779	Tent4b	100	89.535	ENSCAFG00020000987	TENT4B	100	89.971	Canis_lupus_dingo
ENSMUSG00000036779	Tent4b	93	91.811	ENSCHIG00000021933	TENT4B	100	91.811	Capra_hircus
ENSMUSG00000036779	Tent4b	51	92.966	ENSTSYG00000009001	-	100	93.656	Carlito_syrichta
ENSMUSG00000036779	Tent4b	100	91.765	ENSCPOG00000011799	TENT4B	100	91.176	Cavia_porcellus
ENSMUSG00000036779	Tent4b	93	93.365	ENSCCAG00000035345	TENT4B	100	91.667	Cebus_capucinus
ENSMUSG00000036779	Tent4b	93	91.981	ENSCATG00000031641	TENT4B	100	91.981	Cercocebus_atys
ENSMUSG00000036779	Tent4b	83	95.944	ENSCLAG00000004921	TENT4B	98	95.782	Chinchilla_lanigera
ENSMUSG00000036779	Tent4b	93	86.970	ENSCSAG00000005390	TENT4B	100	86.970	Chlorocebus_sabaeus
ENSMUSG00000036779	Tent4b	60	98.214	ENSCHOG00000002006	-	76	98.214	Choloepus_hoffmanni
ENSMUSG00000036779	Tent4b	100	72.754	ENSCPBG00000015960	TENT4B	97	71.758	Chrysemys_picta_bellii
ENSMUSG00000036779	Tent4b	84	95.599	ENSCANG00000041185	TENT4B	100	95.599	Colobus_angolensis_palliatus
ENSMUSG00000036779	Tent4b	100	96.106	ENSCGRG00001023597	Tent4b	100	96.998	Cricetulus_griseus_chok1gshd
ENSMUSG00000036779	Tent4b	100	58.832	ENSCSEG00000011367	tent4b	97	59.541	Cynoglossus_semilaevis
ENSMUSG00000036779	Tent4b	100	57.598	ENSCVAG00000020733	tent4b	97	57.265	Cyprinodon_variegatus
ENSMUSG00000036779	Tent4b	100	57.511	ENSDARG00000060071	tent4b	97	58.069	Danio_rerio
ENSMUSG00000036779	Tent4b	72	94.888	ENSDNOG00000001039	TENT4B	100	94.888	Dasypus_novemcinctus
ENSMUSG00000036779	Tent4b	74	96.200	ENSDORG00000000031	Tent4b	92	96.200	Dipodomys_ordii
ENSMUSG00000036779	Tent4b	64	69.688	ENSETEG00000012522	-	74	69.688	Echinops_telfairi
ENSMUSG00000036779	Tent4b	61	63.702	ENSEBUG00000011220	tent4b	59	68.908	Eptatretus_burgeri
ENSMUSG00000036779	Tent4b	100	88.856	ENSEASG00005014551	TENT4B	100	92.283	Equus_asinus_asinus
ENSMUSG00000036779	Tent4b	95	86.749	ENSECAG00000040529	TENT4B	77	87.578	Equus_caballus
ENSMUSG00000036779	Tent4b	66	93.827	ENSEEUG00000005687	-	84	93.827	Erinaceus_europaeus
ENSMUSG00000036779	Tent4b	78	63.538	ENSELUG00000017815	TENT4B	59	74.878	Esox_lucius
ENSMUSG00000036779	Tent4b	100	58.345	ENSELUG00000006619	tent4b	97	57.329	Esox_lucius
ENSMUSG00000036779	Tent4b	100	90.318	ENSFCAG00000018796	TENT4B	100	93.729	Felis_catus
ENSMUSG00000036779	Tent4b	74	86.310	ENSFALG00000000087	TENT4B	100	86.310	Ficedula_albicollis
ENSMUSG00000036779	Tent4b	75	96.101	ENSFDAG00000013258	TENT4B	100	96.101	Fukomys_damarensis
ENSMUSG00000036779	Tent4b	100	55.988	ENSFHEG00000012383	tent4b	97	56.753	Fundulus_heteroclitus
ENSMUSG00000036779	Tent4b	61	74.818	ENSGMOG00000006223	tent4b	100	60.345	Gadus_morhua
ENSMUSG00000036779	Tent4b	100	75.723	ENSGALG00000031851	TENT4B	97	73.677	Gallus_gallus
ENSMUSG00000036779	Tent4b	100	57.368	ENSGAFG00000009790	tent4b	97	57.880	Gambusia_affinis
ENSMUSG00000036779	Tent4b	83	62.937	ENSGACG00000016727	tent4b	98	63.002	Gasterosteus_aculeatus
ENSMUSG00000036779	Tent4b	100	72.714	ENSGAGG00000003561	TENT4B	97	71.511	Gopherus_agassizii
ENSMUSG00000036779	Tent4b	100	89.466	ENSGGOG00000006316	PAPD5	100	92.881	Gorilla_gorilla
ENSMUSG00000036779	Tent4b	100	56.385	ENSHBUG00000021610	tent4b	97	57.020	Haplochromis_burtoni
ENSMUSG00000036779	Tent4b	100	91.349	ENSHGLG00000004206	TENT4B	100	90.909	Heterocephalus_glaber_female
ENSMUSG00000036779	Tent4b	88	93.489	ENSHGLG00100014639	TENT4B	99	93.489	Heterocephalus_glaber_male
ENSMUSG00000036779	Tent4b	100	59.110	ENSHCOG00000001028	tent4b	97	58.382	Hippocampus_comes
ENSMUSG00000036779	Tent4b	100	57.902	ENSIPUG00000015994	tent4b	97	58.914	Ictalurus_punctatus
ENSMUSG00000036779	Tent4b	93	94.173	ENSJJAG00000015670	Tent4b	100	94.173	Jaculus_jaculus
ENSMUSG00000036779	Tent4b	100	58.417	ENSKMAG00000001070	tent4b	97	57.368	Kryptolebias_marmoratus
ENSMUSG00000036779	Tent4b	100	58.120	ENSLBEG00000023462	tent4b	97	58.060	Labrus_bergylta
ENSMUSG00000036779	Tent4b	100	70.000	ENSLACG00000009825	TENT4B	97	70.000	Latimeria_chalumnae
ENSMUSG00000036779	Tent4b	100	62.014	ENSLOCG00000007410	tent4b	97	63.242	Lepisosteus_oculatus
ENSMUSG00000036779	Tent4b	74	95.800	ENSLAFG00000006069	-	100	95.800	Loxodonta_africana
ENSMUSG00000036779	Tent4b	93	93.523	ENSMFAG00000002315	TENT4B	100	93.523	Macaca_fascicularis
ENSMUSG00000036779	Tent4b	93	93.051	ENSMMUG00000003116	TENT4B	100	94.260	Macaca_mulatta
ENSMUSG00000036779	Tent4b	93	93.681	ENSMNEG00000036382	TENT4B	100	93.681	Macaca_nemestrina
ENSMUSG00000036779	Tent4b	82	96.250	ENSMLEG00000034283	TENT4B	99	95.255	Mandrillus_leucophaeus
ENSMUSG00000036779	Tent4b	100	56.590	ENSMAMG00000004618	tent4b	97	57.736	Mastacembelus_armatus
ENSMUSG00000036779	Tent4b	100	56.385	ENSMZEG00005006186	tent4b	97	57.020	Maylandia_zebra
ENSMUSG00000036779	Tent4b	74	87.226	ENSMGAG00000004957	TENT4B	100	87.226	Meleagris_gallopavo
ENSMUSG00000036779	Tent4b	100	95.912	ENSMAUG00000018042	Tent4b	100	95.912	Mesocricetus_auratus
ENSMUSG00000036779	Tent4b	100	88.501	ENSMICG00000027866	TENT4B	100	90.508	Microcebus_murinus
ENSMUSG00000036779	Tent4b	100	95.620	ENSMOCG00000013042	Tent4b	100	95.620	Microtus_ochrogaster
ENSMUSG00000036779	Tent4b	100	58.646	ENSMMOG00000016359	tent4b	97	57.471	Mola_mola
ENSMUSG00000036779	Tent4b	87	85.254	ENSMODG00000013026	TENT4B	97	85.254	Monodelphis_domestica
ENSMUSG00000036779	Tent4b	97	59.412	ENSMALG00000013905	tent4b	96	59.145	Monopterus_albus
ENSMUSG00000036779	Tent4b	100	99.412	MGP_CAROLIEiJ_G0031355	Tent4b	97	99.412	Mus_caroli
ENSMUSG00000036779	Tent4b	100	98.088	MGP_PahariEiJ_G0022954	Tent4b	100	98.088	Mus_pahari
ENSMUSG00000036779	Tent4b	100	99.265	MGP_SPRETEiJ_G0032473	Tent4b	97	99.265	Mus_spretus
ENSMUSG00000036779	Tent4b	84	95.079	ENSMPUG00000003121	TENT4B	92	95.079	Mustela_putorius_furo
ENSMUSG00000036779	Tent4b	68	86.928	ENSMLUG00000013865	TENT4B	98	86.928	Myotis_lucifugus
ENSMUSG00000036779	Tent4b	76	62.998	ENSNBRG00000008931	tent4b	97	55.954	Neolamprologus_brichardi
ENSMUSG00000036779	Tent4b	100	89.496	ENSNLEG00000000797	TENT4B	100	93.220	Nomascus_leucogenys
ENSMUSG00000036779	Tent4b	74	93.400	ENSOPRG00000013849	TENT4B	100	93.400	Ochotona_princeps
ENSMUSG00000036779	Tent4b	83	95.929	ENSODEG00000002528	TENT4B	97	95.606	Octodon_degus
ENSMUSG00000036779	Tent4b	91	59.680	ENSONIG00000002860	tent4b	92	63.636	Oreochromis_niloticus
ENSMUSG00000036779	Tent4b	67	89.059	ENSOANG00000000589	TENT4B	100	89.059	Ornithorhynchus_anatinus
ENSMUSG00000036779	Tent4b	69	94.433	ENSOCUG00000014750	TENT4B	98	94.433	Oryctolagus_cuniculus
ENSMUSG00000036779	Tent4b	100	56.197	ENSORLG00000013989	tent4b	97	56.534	Oryzias_latipes
ENSMUSG00000036779	Tent4b	100	56.615	ENSORLG00020020171	tent4b	96	58.942	Oryzias_latipes_hni
ENSMUSG00000036779	Tent4b	100	57.041	ENSORLG00015018544	tent4b	97	57.041	Oryzias_latipes_hsok
ENSMUSG00000036779	Tent4b	100	56.392	ENSOMEG00000016359	tent4b	97	57.286	Oryzias_melastigma
ENSMUSG00000036779	Tent4b	94	93.614	ENSOGAG00000011282	TENT4B	99	93.458	Otolemur_garnettii
ENSMUSG00000036779	Tent4b	74	95.200	ENSOARG00000017186	TENT4B	100	95.200	Ovis_aries
ENSMUSG00000036779	Tent4b	88	94.286	ENSPPAG00000033650	TENT4B	100	94.286	Pan_paniscus
ENSMUSG00000036779	Tent4b	93	94.164	ENSPPRG00000024986	TENT4B	100	93.729	Panthera_pardus
ENSMUSG00000036779	Tent4b	51	93.884	ENSPTIG00000020374	-	100	94.562	Panthera_tigris_altaica
ENSMUSG00000036779	Tent4b	93	93.681	ENSPTRG00000008101	TENT4B	100	93.220	Pan_troglodytes
ENSMUSG00000036779	Tent4b	81	96.132	ENSPANG00000006934	TENT4B	92	94.275	Papio_anubis
ENSMUSG00000036779	Tent4b	100	61.461	ENSPKIG00000000206	TENT4B	97	60.745	Paramormyrops_kingsleyae
ENSMUSG00000036779	Tent4b	100	54.249	ENSPKIG00000005085	tent4b	90	69.838	Paramormyrops_kingsleyae
ENSMUSG00000036779	Tent4b	74	84.524	ENSPSIG00000010667	TENT4B	100	84.524	Pelodiscus_sinensis
ENSMUSG00000036779	Tent4b	86	63.193	ENSPMGG00000007216	tent4b	88	59.601	Periophthalmus_magnuspinnatus
ENSMUSG00000036779	Tent4b	93	85.294	ENSPCIG00000018132	TENT4B	97	78.437	Phascolarctos_cinereus
ENSMUSG00000036779	Tent4b	100	57.654	ENSPFOG00000015267	tent4b	100	55.725	Poecilia_formosa
ENSMUSG00000036779	Tent4b	100	57.654	ENSPLAG00000011816	tent4b	97	58.429	Poecilia_latipinna
ENSMUSG00000036779	Tent4b	100	57.511	ENSPMEG00000012621	tent4b	97	58.453	Poecilia_mexicana
ENSMUSG00000036779	Tent4b	100	57.797	ENSPREG00000007243	tent4b	97	58.571	Poecilia_reticulata
ENSMUSG00000036779	Tent4b	75	94.882	ENSPPYG00000007337	-	100	94.882	Pongo_abelii
ENSMUSG00000036779	Tent4b	63	100.000	ENSPCAG00000003515	TENT4B	85	100.000	Procavia_capensis
ENSMUSG00000036779	Tent4b	93	83.728	ENSPCOG00000015505	TENT4B	100	82.542	Propithecus_coquereli
ENSMUSG00000036779	Tent4b	65	89.593	ENSPVAG00000004167	TENT4B	79	89.593	Pteropus_vampyrus
ENSMUSG00000036779	Tent4b	100	56.671	ENSPNYG00000010512	tent4b	97	56.877	Pundamilia_nyererei
ENSMUSG00000036779	Tent4b	100	59.490	ENSPNAG00000023275	tent4b	97	60.057	Pygocentrus_nattereri
ENSMUSG00000036779	Tent4b	94	90.909	ENSRNOG00000024212	Tent4b	100	91.256	Rattus_norvegicus
ENSMUSG00000036779	Tent4b	93	93.523	ENSRBIG00000042876	TENT4B	100	93.523	Rhinopithecus_bieti
ENSMUSG00000036779	Tent4b	93	93.523	ENSRROG00000042164	TENT4B	100	93.523	Rhinopithecus_roxellana
ENSMUSG00000036779	Tent4b	93	93.207	ENSSBOG00000020525	TENT4B	100	93.365	Saimiri_boliviensis_boliviensis
ENSMUSG00000036779	Tent4b	92	85.512	ENSSHAG00000018746	TENT4B	99	85.197	Sarcophilus_harrisii
ENSMUSG00000036779	Tent4b	66	73.934	ENSSFOG00015001704	tent4b	76	74.005	Scleropages_formosus
ENSMUSG00000036779	Tent4b	81	68.014	ENSSFOG00015019677	TENT4B	92	67.018	Scleropages_formosus
ENSMUSG00000036779	Tent4b	100	59.547	ENSSMAG00000009474	tent4b	97	59.065	Scophthalmus_maximus
ENSMUSG00000036779	Tent4b	100	59.344	ENSSDUG00000006848	tent4b	97	59.040	Seriola_dumerili
ENSMUSG00000036779	Tent4b	100	59.486	ENSSLDG00000017282	tent4b	97	59.181	Seriola_lalandi_dorsalis
ENSMUSG00000036779	Tent4b	66	98.969	ENSSARG00000002791	-	84	98.969	Sorex_araneus
ENSMUSG00000036779	Tent4b	97	73.842	ENSSPUG00000010353	TENT4B	87	79.823	Sphenodon_punctatus
ENSMUSG00000036779	Tent4b	100	57.610	ENSSPAG00000020283	tent4b	97	58.405	Stegastes_partitus
ENSMUSG00000036779	Tent4b	100	90.580	ENSSSCG00000040887	TENT4B	97	91.159	Sus_scrofa
ENSMUSG00000036779	Tent4b	74	86.826	ENSTGUG00000008561	TENT4B	100	86.826	Taeniopygia_guttata
ENSMUSG00000036779	Tent4b	100	58.501	ENSTRUG00000006962	tent4b	97	59.169	Takifugu_rubripes
ENSMUSG00000036779	Tent4b	65	71.655	ENSTNIG00000004479	tent4b	90	76.684	Tetraodon_nigroviridis
ENSMUSG00000036779	Tent4b	93	85.759	ENSTBEG00000012515	TENT4B	99	86.709	Tupaia_belangeri
ENSMUSG00000036779	Tent4b	68	96.087	ENSTTRG00000013375	TENT4B	96	96.087	Tursiops_truncatus
ENSMUSG00000036779	Tent4b	100	91.176	ENSUAMG00000024757	TENT4B	100	91.618	Ursus_americanus
ENSMUSG00000036779	Tent4b	74	96.000	ENSUMAG00000006309	TENT4B	91	96.000	Ursus_maritimus
ENSMUSG00000036779	Tent4b	74	86.400	ENSVPAG00000002204	TENT4B	100	86.400	Vicugna_pacos
ENSMUSG00000036779	Tent4b	86	100.000	ENSVVUG00000018169	TENT4B	100	95.963	Vulpes_vulpes
ENSMUSG00000036779	Tent4b	82	69.767	ENSXETG00000000446	tent4b	96	69.410	Xenopus_tropicalis
ENSMUSG00000036779	Tent4b	100	57.368	ENSXCOG00000012709	tent4b	97	58.000	Xiphophorus_couchianus
ENSMUSG00000036779	Tent4b	100	57.797	ENSXMAG00000023205	tent4b	97	58.429	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003887	DNA-directed DNA polymerase activity	-	IEA	Function
GO:0004652	polynucleotide adenylyltransferase activity	21873635.	IBA	Function
GO:0004652	polynucleotide adenylyltransferase activity	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0006378	mRNA polyadenylation	-	ISO	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0010587	miRNA catabolic process	-	ISO	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0016779	nucleotidyltransferase activity	-	IEA	Function
GO:0031499	TRAMP complex	21873635.	IBA	Component
GO:0031499	TRAMP complex	-	ISO	Component
GO:0032211	negative regulation of telomere maintenance via telomerase	-	ISO	Process
GO:0033500	carbohydrate homeostasis	-	ISO	Process
GO:0043629	ncRNA polyadenylation	-	ISO	Process
GO:0043630	ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process	-	ISO	Process
GO:0043631	RNA polyadenylation	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051301	cell division	-	IEA	Process
GO:0060212	negative regulation of nuclear-transcribed mRNA poly(A) tail shortening	-	ISO	Process
GO:0070568	guanylyltransferase activity	-	ISO	Function
GO:0071044	histone mRNA catabolic process	21873635.	IBA	Process
GO:0071044	histone mRNA catabolic process	-	ISO	Process
GO:0071050	snoRNA polyadenylation	21873635.	IBA	Process
GO:0071050	snoRNA polyadenylation	-	ISO	Process
GO:0071076	RNA 3' uridylation	-	ISO	Process
GO:1905870	positive regulation of 3'-UTR-mediated mRNA stabilization	-	ISO	Process