EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000036990 (Gene tree)
Gene ID: 73945
Gene Symbol: Otud4
Alias: 4930431L18Rik|D8Ertd69e
Full Name: OTU domain containing 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 38107
Position: chr8: 79639618-79677724
Accession: 1098801
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000173868	-	662	-	-	- (aa)	-	-
ENSMUST00000174485	-	613	-	-	- (aa)	-	-
ENSMUST00000173300	-	722	-	-	- (aa)	-	-
ENSMUST00000173078	-	7354	XM_006531406	ENSMUSP00000133939	1107 (aa)	XP_006531469	B2RRE7
ENSMUST00000172614	-	875	-	-	- (aa)	-	-
ENSMUST00000173286	-	7213	-	ENSMUSP00000134097	1106 (aa)	-	A0A0R4J260

Gene Model

Click here to download ENSMUSG00000036990's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000036990's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000036990	Otud4	100	87.186	ENSG00000164164	OTUD4	100	91.034	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002376	immune system process	-	IEA	Process
GO:0004843	thiol-dependent ubiquitin-specific protease activity	21873635.	IBA	Function
GO:0004843	thiol-dependent ubiquitin-specific protease activity	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006508	proteolysis	-	IEA	Process
GO:0008233	peptidase activity	-	IEA	Function
GO:0008234	cysteine-type peptidase activity	-	IEA	Function
GO:0016579	protein deubiquitination	21873635.	IBA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0034122	negative regulation of toll-like receptor signaling pathway	21873635.	IBA	Process
GO:0034122	negative regulation of toll-like receptor signaling pathway	29395066.	IDA	Process
GO:0034122	negative regulation of toll-like receptor signaling pathway	-	ISO	Process
GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	-	IEA	Function
GO:0045087	innate immune response	-	IEA	Process
GO:0060090	molecular adaptor activity	-	ISO	Function
GO:0061578	Lys63-specific deubiquitinase activity	21873635.	IBA	Function
GO:0061578	Lys63-specific deubiquitinase activity	29395066.	IDA	Function
GO:0061578	Lys63-specific deubiquitinase activity	-	ISO	Function
GO:0070536	protein K63-linked deubiquitination	29395066.	IDA	Process
GO:0070536	protein K63-linked deubiquitination	-	ISO	Process
GO:0071108	protein K48-linked deubiquitination	-	ISO	Process
GO:1901537	positive regulation of DNA demethylation	-	ISO	Process
GO:1903093	regulation of protein K48-linked deubiquitination	21873635.	IBA	Process
GO:1903093	regulation of protein K48-linked deubiquitination	-	ISO	Process
GO:2000660	negative regulation of interleukin-1-mediated signaling pathway	21873635.	IBA	Process
GO:2000660	negative regulation of interleukin-1-mediated signaling pathway	29395066.	IDA	Process
GO:2000660	negative regulation of interleukin-1-mediated signaling pathway	-	ISO	Process