EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000037149 (Gene tree)
Gene ID
104721
Gene Symbol
Ddx1
Alias
-
Full Name
DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
32241 bases
Position
chr12:13216973-13249213
Accession
2144727
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000065987DEADPF00270.293.3e-8111
ENSMUSP00000152513DEADPF00270.294.1e-0911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000071103-4842-ENSMUSP00000065987740 (aa)-Q91VR5
ENSMUST00000221028-667--- (aa)--
ENSMUST00000221623-724-ENSMUSP00000152513190 (aa)-A0A1Y7VM48
Gene Model
Click here to download ENSMUSG00000037149's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000037149's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000037149Ddx15350.847ENSMUSG00000004393Ddx568250.000
ENSMUSG00000037149Ddx15541.071ENSMUSG00000020677Ddx526041.071
ENSMUSG00000037149Ddx16340.909ENSMUSG00000057788Ddx497240.909
ENSMUSG00000037149Ddx15340.678ENSMUSG00000032097Ddx66940.678
ENSMUSG00000037149Ddx16046.875ENSMUSG00000030204Ddx478646.875
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000037149Ddx110097.568ENSG00000079785DDX110097.568Homo_sapiens
ENSMUSG00000037149Ddx110084.459ENSAPOG00000003166ddx110084.459Acanthochromis_polyacanthus
ENSMUSG00000037149Ddx19997.429ENSAMEG00000001071DDX19997.429Ailuropoda_melanoleuca
ENSMUSG00000037149Ddx18983.053ENSACIG00000017422ddx19982.443Amphilophus_citrinellus
ENSMUSG00000037149Ddx110081.053ENSAOCG00000015436ddx19483.962Amphiprion_ocellaris
ENSMUSG00000037149Ddx110085.270ENSAPEG00000007699ddx110085.270Amphiprion_percula
ENSMUSG00000037149Ddx110078.421ENSATEG00000003965ddx19883.969Anabas_testudineus
ENSMUSG00000037149Ddx110092.204ENSAPLG00000011093DDX110092.204Anas_platyrhynchos
ENSMUSG00000037149Ddx110088.947ENSACAG00000011036DDX19991.261Anolis_carolinensis
ENSMUSG00000037149Ddx110097.838ENSANAG00000037912DDX110097.838Aotus_nancymaae
ENSMUSG00000037149Ddx19984.668ENSACLG00000008850ddx19983.792Astatotilapia_calliptera
ENSMUSG00000037149Ddx110084.865ENSAMXG00000002100ddx110084.865Astyanax_mexicanus
ENSMUSG00000037149Ddx110097.162ENSBTAG00000009906DDX110097.162Bos_taurus
ENSMUSG00000037149Ddx19947.449WBGene00021938Y55F3BR.19847.432Caenorhabditis_elegans
ENSMUSG00000037149Ddx110097.838ENSCJAG00000007076DDX110097.838Callithrix_jacchus
ENSMUSG00000037149Ddx110097.568ENSCAFG00000003686DDX110097.568Canis_familiaris
ENSMUSG00000037149Ddx110097.568ENSCAFG00020026083DDX110097.568Canis_lupus_dingo
ENSMUSG00000037149Ddx110097.027ENSCHIG00000011046DDX110097.027Capra_hircus
ENSMUSG00000037149Ddx110098.243ENSTSYG00000002477-10098.243Carlito_syrichta
ENSMUSG00000037149Ddx19970.014ENSTSYG00000037396-9873.374Carlito_syrichta
ENSMUSG00000037149Ddx18677.138ENSCAPG00000008906-9377.138Cavia_aperea
ENSMUSG00000037149Ddx110095.789ENSCPOG00000032467-10095.817Cavia_porcellus
ENSMUSG00000037149Ddx18894.181ENSCPOG00000009816-9694.181Cavia_porcellus
ENSMUSG00000037149Ddx110097.838ENSCCAG00000030085DDX110097.838Cebus_capucinus
ENSMUSG00000037149Ddx110097.703ENSCATG00000033924DDX110097.703Cercocebus_atys
ENSMUSG00000037149Ddx110097.027ENSCLAG00000005434DDX110097.027Chinchilla_lanigera
ENSMUSG00000037149Ddx110097.703ENSCSAG00000007883DDX110097.703Chlorocebus_sabaeus
ENSMUSG00000037149Ddx17397.862ENSCHOG00000002171DDX17497.862Choloepus_hoffmanni
ENSMUSG00000037149Ddx110091.053ENSCPBG00000013330DDX19992.271Chrysemys_picta_bellii
ENSMUSG00000037149Ddx110067.368ENSCING00000001176-10065.374Ciona_intestinalis
ENSMUSG00000037149Ddx110059.585ENSCSAVG00000003028-9960.302Ciona_savignyi
ENSMUSG00000037149Ddx110097.568ENSCANG00000031530DDX110097.568Colobus_angolensis_palliatus
ENSMUSG00000037149Ddx110099.474ENSCGRG00001013025Ddx110099.189Cricetulus_griseus_chok1gshd
ENSMUSG00000037149Ddx110099.474ENSCGRG00000000676Ddx110099.189Cricetulus_griseus_crigri
ENSMUSG00000037149Ddx19984.469ENSCSEG00000002630ddx110084.469Cynoglossus_semilaevis
ENSMUSG00000037149Ddx19983.924ENSCVAG00000020927ddx110083.924Cyprinodon_variegatus
ENSMUSG00000037149Ddx110084.189ENSDARG00000032117ddx110084.196Danio_rerio
ENSMUSG00000037149Ddx110096.892ENSDNOG00000006905DDX110096.892Dasypus_novemcinctus
ENSMUSG00000037149Ddx110098.108ENSDORG00000012847Ddx110098.108Dipodomys_ordii
ENSMUSG00000037149Ddx110058.115FBgn0015075Ddx19959.508Drosophila_melanogaster
ENSMUSG00000037149Ddx110086.486ENSETEG00000014259DDX110086.486Echinops_telfairi
ENSMUSG00000037149Ddx16477.754ENSEBUG00000009800-9977.754Eptatretus_burgeri
ENSMUSG00000037149Ddx17482.979ENSEBUG00000008500-8086.413Eptatretus_burgeri
ENSMUSG00000037149Ddx110097.297ENSEASG00005009335DDX19297.297Equus_asinus_asinus
ENSMUSG00000037149Ddx110096.316ENSECAG00000016396DDX110097.274Equus_caballus
ENSMUSG00000037149Ddx18994.539ENSEEUG00000001606DDX18994.539Erinaceus_europaeus
ENSMUSG00000037149Ddx110082.321ENSELUG00000006743ddx110082.321Esox_lucius
ENSMUSG00000037149Ddx110097.838ENSFCAG00000004680DDX110097.838Felis_catus
ENSMUSG00000037149Ddx110091.892ENSFALG00000008696DDX110091.892Ficedula_albicollis
ENSMUSG00000037149Ddx110096.486ENSFDAG00000021305DDX110096.486Fukomys_damarensis
ENSMUSG00000037149Ddx110082.703ENSFHEG00000008444ddx110082.703Fundulus_heteroclitus
ENSMUSG00000037149Ddx110081.292ENSGMOG00000011300ddx110081.292Gadus_morhua
ENSMUSG00000037149Ddx110093.243ENSGALG00000016461DDX110093.243Gallus_gallus
ENSMUSG00000037149Ddx110083.514ENSGAFG00000004706ddx110083.514Gambusia_affinis
ENSMUSG00000037149Ddx110082.297ENSGACG00000011162ddx110082.297Gasterosteus_aculeatus
ENSMUSG00000037149Ddx110093.243ENSGAGG00000021020DDX110093.243Gopherus_agassizii
ENSMUSG00000037149Ddx110097.568ENSGGOG00000012482DDX110097.568Gorilla_gorilla
ENSMUSG00000037149Ddx110084.595ENSHBUG00000014069ddx110084.595Haplochromis_burtoni
ENSMUSG00000037149Ddx110096.892ENSHGLG00000000801DDX110096.892Heterocephalus_glaber_female
ENSMUSG00000037149Ddx110096.842ENSHGLG00100000711DDX110096.866Heterocephalus_glaber_male
ENSMUSG00000037149Ddx110084.054ENSHCOG00000011492ddx19684.054Hippocampus_comes
ENSMUSG00000037149Ddx110082.973ENSIPUG00000003494ddx110082.973Ictalurus_punctatus
ENSMUSG00000037149Ddx19998.093ENSSTOG00000003977DDX110098.093Ictidomys_tridecemlineatus
ENSMUSG00000037149Ddx18993.740ENSJJAG00000013315Ddx110093.740Jaculus_jaculus
ENSMUSG00000037149Ddx110085.541ENSKMAG00000011340ddx110085.541Kryptolebias_marmoratus
ENSMUSG00000037149Ddx18878.746ENSLBEG00000008692ddx19978.746Labrus_bergylta
ENSMUSG00000037149Ddx110087.297ENSLACG00000010529DDX110087.297Latimeria_chalumnae
ENSMUSG00000037149Ddx110086.729ENSLOCG00000016473ddx110086.729Lepisosteus_oculatus
ENSMUSG00000037149Ddx110096.316ENSLAFG00000002213DDX19997.015Loxodonta_africana
ENSMUSG00000037149Ddx110097.703ENSMFAG00000033987DDX110097.703Macaca_fascicularis
ENSMUSG00000037149Ddx110097.703ENSMMUG00000023437DDX110097.703Macaca_mulatta
ENSMUSG00000037149Ddx110097.703ENSMNEG00000029189DDX110097.703Macaca_nemestrina
ENSMUSG00000037149Ddx110097.568ENSMLEG00000030787DDX110097.568Mandrillus_leucophaeus
ENSMUSG00000037149Ddx110085.000ENSMAMG00000015916ddx110085.000Mastacembelus_armatus
ENSMUSG00000037149Ddx19984.668ENSMZEG00005015207ddx19983.792Maylandia_zebra
ENSMUSG00000037149Ddx110091.146ENSMGAG00000014025DDX110089.024Meleagris_gallopavo
ENSMUSG00000037149Ddx16498.182ENSMAUG00000016156Ddx110098.182Mesocricetus_auratus
ENSMUSG00000037149Ddx110097.568ENSMICG00000001023DDX110097.568Microcebus_murinus
ENSMUSG00000037149Ddx110099.474ENSMOCG00000000257Ddx110099.189Microtus_ochrogaster
ENSMUSG00000037149Ddx18982.927ENSMMOG00000015397ddx19982.927Mola_mola
ENSMUSG00000037149Ddx19994.844ENSMODG00000010275DDX19994.844Monodelphis_domestica
ENSMUSG00000037149Ddx110084.324ENSMALG00000016409ddx110084.324Monopterus_albus
ENSMUSG00000037149Ddx110099.474MGP_CAROLIEiJ_G0017622Ddx110099.324Mus_caroli
ENSMUSG00000037149Ddx110099.595MGP_PahariEiJ_G0029378Ddx110099.595Mus_pahari
ENSMUSG00000037149Ddx1100100.000MGP_SPRETEiJ_G0018464Ddx1100100.000Mus_spretus
ENSMUSG00000037149Ddx110097.838ENSMPUG00000013606DDX110097.838Mustela_putorius_furo
ENSMUSG00000037149Ddx110096.842ENSMLUG00000003027DDX19897.011Myotis_lucifugus
ENSMUSG00000037149Ddx110098.947ENSNGAG00000015783Ddx110098.774Nannospalax_galili
ENSMUSG00000037149Ddx17880.104ENSNBRG00000020677ddx19480.104Neolamprologus_brichardi
ENSMUSG00000037149Ddx110097.703ENSNLEG00000014417DDX110097.703Nomascus_leucogenys
ENSMUSG00000037149Ddx19992.476ENSMEUG00000008254DDX19992.476Notamacropus_eugenii
ENSMUSG00000037149Ddx19283.051ENSOPRG00000004290DDX110069.459Ochotona_princeps
ENSMUSG00000037149Ddx110097.027ENSODEG00000000569DDX110097.027Octodon_degus
ENSMUSG00000037149Ddx110085.290ENSONIG00000000513ddx110085.290Oreochromis_niloticus
ENSMUSG00000037149Ddx17790.476ENSOANG00000005450DDX19991.756Ornithorhynchus_anatinus
ENSMUSG00000037149Ddx110097.973ENSOCUG00000007010DDX110097.973Oryctolagus_cuniculus
ENSMUSG00000037149Ddx110084.595ENSORLG00000016709ddx110084.595Oryzias_latipes
ENSMUSG00000037149Ddx19984.332ENSORLG00020003290ddx110084.332Oryzias_latipes_hni
ENSMUSG00000037149Ddx110084.189ENSORLG00015022438ddx110084.189Oryzias_latipes_hsok
ENSMUSG00000037149Ddx110079.730ENSOMEG00000017620ddx110078.243Oryzias_melastigma
ENSMUSG00000037149Ddx19997.418ENSOGAG00000008730DDX110097.418Otolemur_garnettii
ENSMUSG00000037149Ddx19996.739ENSOARG00000016369DDX110096.739Ovis_aries
ENSMUSG00000037149Ddx110097.432ENSPPAG00000027432DDX110097.432Pan_paniscus
ENSMUSG00000037149Ddx110097.838ENSPPRG00000020556DDX110097.838Panthera_pardus
ENSMUSG00000037149Ddx110097.703ENSPTIG00000008267DDX110097.703Panthera_tigris_altaica
ENSMUSG00000037149Ddx110097.432ENSPTRG00000011670DDX110097.432Pan_troglodytes
ENSMUSG00000037149Ddx110097.895ENSPANG00000025185DDX110097.838Papio_anubis
ENSMUSG00000037149Ddx110084.737ENSPKIG00000012466ddx110084.060Paramormyrops_kingsleyae
ENSMUSG00000037149Ddx110089.474ENSPSIG00000012292DDX110090.074Pelodiscus_sinensis
ENSMUSG00000037149Ddx110081.892ENSPMGG00000000782ddx110080.405Periophthalmus_magnuspinnatus
ENSMUSG00000037149Ddx110098.947ENSPEMG00000016389Ddx110098.378Peromyscus_maniculatus_bairdii
ENSMUSG00000037149Ddx19979.348ENSPMAG00000009118-10079.348Petromyzon_marinus
ENSMUSG00000037149Ddx110095.405ENSPCIG00000010941DDX110095.405Phascolarctos_cinereus
ENSMUSG00000037149Ddx18682.115ENSPFOG00000006873-10082.115Poecilia_formosa
ENSMUSG00000037149Ddx110083.649ENSPFOG00000011921ddx110083.649Poecilia_formosa
ENSMUSG00000037149Ddx110083.378ENSPLAG00000005939ddx110083.378Poecilia_latipinna
ENSMUSG00000037149Ddx110083.919ENSPMEG00000011140ddx110083.919Poecilia_mexicana
ENSMUSG00000037149Ddx110083.514ENSPREG00000011751ddx110083.514Poecilia_reticulata
ENSMUSG00000037149Ddx110097.568ENSPPYG00000012638DDX110097.568Pongo_abelii
ENSMUSG00000037149Ddx19988.360ENSPCAG00000001491DDX110083.649Procavia_capensis
ENSMUSG00000037149Ddx110096.842ENSPCOG00000028185DDX19995.232Propithecus_coquereli
ENSMUSG00000037149Ddx110097.568ENSPVAG00000013618DDX110097.568Pteropus_vampyrus
ENSMUSG00000037149Ddx110084.595ENSPNYG00000013839ddx110084.595Pundamilia_nyererei
ENSMUSG00000037149Ddx18983.664ENSPNAG00000017033ddx19783.664Pygocentrus_nattereri
ENSMUSG00000037149Ddx110098.919ENSRNOG00000006652Ddx110098.919Rattus_norvegicus
ENSMUSG00000037149Ddx110097.368ENSRBIG00000041664DDX110096.800Rhinopithecus_bieti
ENSMUSG00000037149Ddx110097.368ENSRROG00000031167DDX110097.162Rhinopithecus_roxellana
ENSMUSG00000037149Ddx110097.973ENSSBOG00000027577DDX110097.973Saimiri_boliviensis_boliviensis
ENSMUSG00000037149Ddx19986.839ENSSHAG00000009363DDX19986.839Sarcophilus_harrisii
ENSMUSG00000037149Ddx110083.514ENSSFOG00015014476ddx110083.514Scleropages_formosus
ENSMUSG00000037149Ddx110082.973ENSSMAG00000010094ddx110082.973Scophthalmus_maximus
ENSMUSG00000037149Ddx110084.459ENSSDUG00000012334ddx110084.459Seriola_dumerili
ENSMUSG00000037149Ddx110084.054ENSSLDG00000025345ddx110084.054Seriola_lalandi_dorsalis
ENSMUSG00000037149Ddx19986.512ENSSARG00000004536DDX110086.512Sorex_araneus
ENSMUSG00000037149Ddx110090.541ENSSPUG00000018835DDX110090.541Sphenodon_punctatus
ENSMUSG00000037149Ddx110080.000ENSSPAG00000023554ddx110079.730Stegastes_partitus
ENSMUSG00000037149Ddx110096.892ENSSSCG00000008619DDX110096.892Sus_scrofa
ENSMUSG00000037149Ddx110091.892ENSTGUG00000013096DDX110091.892Taeniopygia_guttata
ENSMUSG00000037149Ddx19983.875ENSTRUG00000015765ddx19983.875Takifugu_rubripes
ENSMUSG00000037149Ddx110084.054ENSTNIG00000016309ddx110084.054Tetraodon_nigroviridis
ENSMUSG00000037149Ddx19993.733ENSTBEG00000008454DDX110093.733Tupaia_belangeri
ENSMUSG00000037149Ddx110096.216ENSTTRG00000005081DDX110096.216Tursiops_truncatus
ENSMUSG00000037149Ddx110096.316ENSUAMG00000017375DDX19384.528Ursus_americanus
ENSMUSG00000037149Ddx110096.842ENSUMAG00000023450DDX110097.820Ursus_maritimus
ENSMUSG00000037149Ddx18796.364ENSVPAG00000007764DDX18598.100Vicugna_pacos
ENSMUSG00000037149Ddx110096.842ENSVVUG00000013085DDX19697.551Vulpes_vulpes
ENSMUSG00000037149Ddx110090.270ENSXETG00000017825ddx110090.270Xenopus_tropicalis
ENSMUSG00000037149Ddx110080.857ENSXCOG00000007082ddx110080.857Xiphophorus_couchianus
ENSMUSG00000037149Ddx110083.378ENSXMAG00000004555ddx110083.378Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0002376immune system process-IEAProcess
GO:0002735positive regulation of myeloid dendritic cell cytokine production21703541.IMPProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003677DNA binding-IEAFunction
GO:0003682chromatin binding-ISOFunction
GO:0003712transcription coregulator activity-ISOFunction
GO:0003723RNA binding-IEAFunction
GO:0003725double-stranded RNA binding21703541.IDAFunction
GO:0004386helicase activity-IEAFunction
GO:0004518nuclease activity-ISOFunction
GO:0004527exonuclease activity-IEAFunction
GO:0005515protein binding18758164.21703541.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm-ISOComponent
GO:0005739mitochondrion21703541.IDAComponent
GO:0005829cytosol21703541.IDAComponent
GO:0005829cytosol-ISOComponent
GO:0006302double-strand break repair-ISOProcess
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation-ISOProcess
GO:0006397mRNA processing-IEAProcess
GO:0008026ATP-dependent helicase activity-ISOFunction
GO:0008033tRNA processing-IEAProcess
GO:0008143poly(A) binding-ISOFunction
GO:0009615response to virus21703541.IMPProcess
GO:0010494cytoplasmic stress granule21933836.IDAComponent
GO:0010494cytoplasmic stress granule-ISOComponent
GO:0016787hydrolase activity-IEAFunction
GO:0032508DNA duplex unwinding-ISOProcess
GO:0033677DNA/RNA helicase activity-ISOFunction
GO:0043123positive regulation of I-kappaB kinase/NF-kappaB signaling21703541.IMPProcess
GO:0043330response to exogenous dsRNA21703541.IMPProcess
GO:0045087innate immune response-IEAProcess
GO:0051607defense response to virus-IEAProcess
GO:0071920cleavage body-ISOComponent
GO:0072669tRNA-splicing ligase complex-ISOComponent
GO:0090305nucleic acid phosphodiester bond hydrolysis-ISOProcess
GO:1903608protein localization to cytoplasmic stress granule-ISOProcess
GO:1990904ribonucleoprotein complex18809582.ISOComponent

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