EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000037236 (Gene tree)
Gene ID: 17184
Gene Symbol: Matr3
Alias: 1110061A14Rik|2810017I02Rik|D030046F20Rik
Full Name: matrin 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 29888 bases
Position: chr18:35562158-35592045
Accession: 1298379
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000125761	RRM_5	PF13893.6	4.1e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000166793	-	4472	-	ENSMUSP00000125761	846 (aa)	-	Q8K310

Gene Model

Click here to download ENSMUSG00000037236's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000037236's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000037236	Matr3	100	98.347	ENSG00000015479	MATR3	100	100.000	Homo_sapiens
ENSMUSG00000037236	Matr3	99	92.969	ENSAMEG00000011347	-	100	92.969	Ailuropoda_melanoleuca
ENSMUSG00000037236	Matr3	100	77.644	ENSAPLG00000008118	-	100	75.711	Anas_platyrhynchos
ENSMUSG00000037236	Matr3	99	71.719	ENSACAG00000016233	-	99	70.370	Anolis_carolinensis
ENSMUSG00000037236	Matr3	100	97.993	ENSANAG00000022951	-	100	97.993	Aotus_nancymaae
ENSMUSG00000037236	Matr3	76	72.205	ENSANAG00000024654	-	99	72.205	Aotus_nancymaae
ENSMUSG00000037236	Matr3	85	30.317	ENSAMXG00000010685	matr3l1.1	86	30.377	Astyanax_mexicanus
ENSMUSG00000037236	Matr3	86	33.484	ENSAMXG00000010681	matr3l1.1	77	34.132	Astyanax_mexicanus
ENSMUSG00000037236	Matr3	93	92.399	ENSBTAG00000006756	MATR3	99	92.399	Bos_taurus
ENSMUSG00000037236	Matr3	100	92.737	ENSCJAG00000006888	-	99	97.047	Callithrix_jacchus
ENSMUSG00000037236	Matr3	100	97.644	ENSCAFG00000001345	MATR3	100	97.644	Canis_familiaris
ENSMUSG00000037236	Matr3	99	95.775	ENSCAFG00020010504	-	98	97.775	Canis_lupus_dingo
ENSMUSG00000037236	Matr3	100	98.115	ENSCHIG00000025746	-	100	98.115	Capra_hircus
ENSMUSG00000037236	Matr3	100	98.229	ENSTSYG00000011028	-	100	98.229	Carlito_syrichta
ENSMUSG00000037236	Matr3	99	97.991	ENSCPOG00000014076	-	99	97.991	Cavia_porcellus
ENSMUSG00000037236	Matr3	100	98.229	ENSCCAG00000025074	-	100	98.229	Cebus_capucinus
ENSMUSG00000037236	Matr3	65	97.086	ENSCATG00000041304	-	98	97.086	Cercocebus_atys
ENSMUSG00000037236	Matr3	99	98.227	ENSCLAG00000015998	-	99	98.227	Chinchilla_lanigera
ENSMUSG00000037236	Matr3	100	98.465	ENSCSAG00000013075	-	100	98.465	Chlorocebus_sabaeus
ENSMUSG00000037236	Matr3	100	76.013	ENSCPBG00000006303	-	100	75.219	Chrysemys_picta_bellii
ENSMUSG00000037236	Matr3	100	97.048	ENSCANG00000028224	-	100	97.048	Colobus_angolensis_palliatus
ENSMUSG00000037236	Matr3	100	98.937	ENSCGRG00001020227	Matr3	100	98.937	Cricetulus_griseus_chok1gshd
ENSMUSG00000037236	Matr3	100	98.819	ENSCGRG00000011298	Matr3	100	98.819	Cricetulus_griseus_crigri
ENSMUSG00000037236	Matr3	89	32.143	ENSCSEG00000012682	matr3l1.1	93	32.143	Cynoglossus_semilaevis
ENSMUSG00000037236	Matr3	85	33.113	ENSCVAG00000005337	matr3l1.1	83	30.921	Cyprinodon_variegatus
ENSMUSG00000037236	Matr3	100	92.650	ENSDNOG00000037723	-	100	92.650	Dasypus_novemcinctus
ENSMUSG00000037236	Matr3	100	98.115	ENSEASG00005020857	-	100	98.115	Equus_asinus_asinus
ENSMUSG00000037236	Matr3	100	98.115	ENSECAG00000012882	MATR3	100	98.115	Equus_caballus
ENSMUSG00000037236	Matr3	86	30.973	ENSELUG00000021848	matr3l1.1	66	51.515	Esox_lucius
ENSMUSG00000037236	Matr3	75	42.718	ENSELUG00000021651	si:ch211-271b14.1	82	42.718	Esox_lucius
ENSMUSG00000037236	Matr3	100	97.998	ENSFCAG00000021911	-	100	97.998	Felis_catus
ENSMUSG00000037236	Matr3	100	75.930	ENSFALG00000003071	-	100	75.219	Ficedula_albicollis
ENSMUSG00000037236	Matr3	100	97.166	ENSFDAG00000017675	-	100	97.166	Fukomys_damarensis
ENSMUSG00000037236	Matr3	100	76.999	ENSGALG00000002478	MATR3	100	73.713	Gallus_gallus
ENSMUSG00000037236	Matr3	100	75.847	ENSGAGG00000011386	-	100	75.219	Gopherus_agassizii
ENSMUSG00000037236	Matr3	100	98.465	ENSGGOG00000007308	-	100	98.465	Gorilla_gorilla
ENSMUSG00000037236	Matr3	100	98.347	ENSHGLG00000004673	MATR3	100	98.347	Heterocephalus_glaber_female
ENSMUSG00000037236	Matr3	60	97.446	ENSHGLG00100006442	-	100	97.446	Heterocephalus_glaber_male
ENSMUSG00000037236	Matr3	57	37.222	ENSHCOG00000013223	matr3l1.1	84	30.562	Hippocampus_comes
ENSMUSG00000037236	Matr3	100	98.115	ENSSTOG00000014746	-	100	98.115	Ictidomys_tridecemlineatus
ENSMUSG00000037236	Matr3	100	97.403	ENSJJAG00000021710	-	100	97.403	Jaculus_jaculus
ENSMUSG00000037236	Matr3	60	69.276	ENSJJAG00000011022	-	100	69.472	Jaculus_jaculus
ENSMUSG00000037236	Matr3	99	56.026	ENSLACG00000006743	-	99	57.003	Latimeria_chalumnae
ENSMUSG00000037236	Matr3	100	93.296	ENSMFAG00000000634	-	98	97.268	Macaca_fascicularis
ENSMUSG00000037236	Matr3	59	96.819	ENSMMUG00000015963	-	98	96.819	Macaca_mulatta
ENSMUSG00000037236	Matr3	100	93.296	ENSMMUG00000016741	MATR3	99	98.359	Macaca_mulatta
ENSMUSG00000037236	Matr3	100	98.583	ENSMNEG00000042856	-	100	98.583	Macaca_nemestrina
ENSMUSG00000037236	Matr3	100	98.583	ENSMLEG00000041178	-	100	98.583	Mandrillus_leucophaeus
ENSMUSG00000037236	Matr3	72	55.556	ENSMAMG00000013840	matr3l1.1	78	36.905	Mastacembelus_armatus
ENSMUSG00000037236	Matr3	100	76.889	ENSMGAG00000001331	-	100	75.110	Meleagris_gallopavo
ENSMUSG00000037236	Matr3	100	98.819	ENSMAUG00000011647	Matr3	100	98.819	Mesocricetus_auratus
ENSMUSG00000037236	Matr3	64	95.046	ENSMICG00000012438	-	99	96.813	Microcebus_murinus
ENSMUSG00000037236	Matr3	100	98.701	ENSMOCG00000015711	Matr3	100	98.701	Microtus_ochrogaster
ENSMUSG00000037236	Matr3	100	90.749	ENSMODG00000011925	-	99	90.164	Monodelphis_domestica
ENSMUSG00000037236	Matr3	100	100.000	MGP_CAROLIEiJ_G0022108	Matr3	100	100.000	Mus_caroli
ENSMUSG00000037236	Matr3	100	99.528	MGP_PahariEiJ_G0018842	Matr3	100	99.528	Mus_pahari
ENSMUSG00000037236	Matr3	100	99.645	MGP_SPRETEiJ_G0023020	Matr3	100	99.645	Mus_spretus
ENSMUSG00000037236	Matr3	100	96.412	ENSMPUG00000009297	-	100	96.412	Mustela_putorius_furo
ENSMUSG00000037236	Matr3	100	97.176	ENSMLUG00000005798	-	99	97.176	Myotis_lucifugus
ENSMUSG00000037236	Matr3	100	98.819	ENSNGAG00000017452	Matr3	100	98.819	Nannospalax_galili
ENSMUSG00000037236	Matr3	100	98.583	ENSNLEG00000009093	-	100	98.583	Nomascus_leucogenys
ENSMUSG00000037236	Matr3	99	90.621	ENSOPRG00000016511	-	100	90.621	Ochotona_princeps
ENSMUSG00000037236	Matr3	99	97.872	ENSODEG00000003015	-	99	97.872	Octodon_degus
ENSMUSG00000037236	Matr3	100	98.229	ENSOCUG00000026311	MATR3	100	98.229	Oryctolagus_cuniculus
ENSMUSG00000037236	Matr3	71	36.364	ENSORLG00020009362	matr3l1.1	80	33.333	Oryzias_latipes_hni
ENSMUSG00000037236	Matr3	66	44.565	ENSORLG00015018551	matr3l1.1	81	33.333	Oryzias_latipes_hsok
ENSMUSG00000037236	Matr3	68	40.351	ENSOMEG00000022287	matr3l1.1	91	37.984	Oryzias_melastigma
ENSMUSG00000037236	Matr3	100	98.701	ENSOGAG00000010607	-	100	98.701	Otolemur_garnettii
ENSMUSG00000037236	Matr3	100	98.115	ENSOARG00000016931	-	99	98.115	Ovis_aries
ENSMUSG00000037236	Matr3	65	91.971	ENSPPAG00000026720	-	99	92.322	Pan_paniscus
ENSMUSG00000037236	Matr3	100	93.184	ENSPPAG00000001418	-	98	97.086	Pan_paniscus
ENSMUSG00000037236	Matr3	100	98.115	ENSPPRG00000008004	-	100	98.115	Panthera_pardus
ENSMUSG00000037236	Matr3	96	98.030	ENSPTIG00000010711	-	100	98.030	Panthera_tigris_altaica
ENSMUSG00000037236	Matr3	100	93.184	ENSPTRG00000017294	MATR3	98	97.086	Pan_troglodytes
ENSMUSG00000037236	Matr3	65	97.810	ENSPANG00000032489	-	99	97.810	Papio_anubis
ENSMUSG00000037236	Matr3	100	97.166	ENSPANG00000012018	-	100	97.166	Papio_anubis
ENSMUSG00000037236	Matr3	96	33.392	ENSPKIG00000000333	matr3l1.1	77	34.137	Paramormyrops_kingsleyae
ENSMUSG00000037236	Matr3	100	76.368	ENSPSIG00000014598	-	100	74.890	Pelodiscus_sinensis
ENSMUSG00000037236	Matr3	100	98.347	ENSPEMG00000020679	Matr3	100	98.347	Peromyscus_maniculatus_bairdii
ENSMUSG00000037236	Matr3	100	93.296	ENSPPYG00000015835	-	100	93.296	Pongo_abelii
ENSMUSG00000037236	Matr3	100	98.465	ENSPCOG00000025718	-	100	98.465	Propithecus_coquereli
ENSMUSG00000037236	Matr3	98	93.402	ENSPVAG00000015431	-	100	93.402	Pteropus_vampyrus
ENSMUSG00000037236	Matr3	100	99.174	ENSRNOG00000019875	Matr3	100	99.174	Rattus_norvegicus
ENSMUSG00000037236	Matr3	65	97.268	ENSRBIG00000034713	-	98	97.268	Rhinopithecus_bieti
ENSMUSG00000037236	Matr3	100	96.930	ENSRROG00000043949	-	100	96.930	Rhinopithecus_roxellana
ENSMUSG00000037236	Matr3	100	96.222	ENSRROG00000039415	-	100	98.035	Rhinopithecus_roxellana
ENSMUSG00000037236	Matr3	100	98.111	ENSSBOG00000030159	-	100	98.111	Saimiri_boliviensis_boliviensis
ENSMUSG00000037236	Matr3	100	90.867	ENSSHAG00000010331	-	99	90.281	Sarcophilus_harrisii
ENSMUSG00000037236	Matr3	62	55.556	ENSSDUG00000015369	matr3l1.1	79	35.714	Seriola_dumerili
ENSMUSG00000037236	Matr3	99	75.383	ENSSPUG00000019236	-	99	74.697	Sphenodon_punctatus
ENSMUSG00000037236	Matr3	100	98.469	ENSSSCG00000014343	-	100	98.469	Sus_scrofa
ENSMUSG00000037236	Matr3	99	76.780	ENSTGUG00000014568	MATR3	99	75.439	Taeniopygia_guttata
ENSMUSG00000037236	Matr3	62	57.143	ENSTNIG00000003166	matr3l1.1	88	57.143	Tetraodon_nigroviridis
ENSMUSG00000037236	Matr3	85	97.914	ENSUAMG00000000097	-	97	97.914	Ursus_americanus
ENSMUSG00000037236	Matr3	100	97.527	ENSUMAG00000015808	-	100	97.527	Ursus_maritimus
ENSMUSG00000037236	Matr3	100	92.325	ENSVPAG00000006337	-	100	92.325	Vicugna_pacos
ENSMUSG00000037236	Matr3	100	97.880	ENSVVUG00000020287	-	100	97.880	Vulpes_vulpes
ENSMUSG00000037236	Matr3	100	52.563	ENSXETG00000003838	matr3	100	51.641	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001825	blastocyst formation	27869233.	IMP	Process
GO:0002218	activation of innate immune response	-	ISO	Process
GO:0002376	immune system process	-	IEA	Process
GO:0003170	heart valve development	25574029.	IMP	Process
GO:0003281	ventricular septum development	25574029.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	25574029.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0010608	posttranscriptional regulation of gene expression	-	ISO	Process
GO:0016363	nuclear matrix	-	ISO	Component
GO:0035198	miRNA binding	-	ISO	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0045087	innate immune response	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function