EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000172035	-	6213	XM_006532853	ENSMUSP00000131842	1503 (aa)	XP_006532916	E9PUU4
ENSMUST00000134733	-	627	-	-	- (aa)	-	-
ENSMUST00000102711	-	4919	XM_006532852	ENSMUSP00000099772	1501 (aa)	XP_006532915	A2AFQ9
ENSMUST00000134953	-	601	-	ENSMUSP00000116600	177 (aa)	-	F7CKD6
ENSMUST00000035604	-	4922	-	ENSMUSP00000036603	1502 (aa)	-	Q8BX17

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000037275	Gemin5	99	92.045	ENSG00000082516	GEMIN5	99	82.185	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000340	RNA 7-methylguanosine cap binding	-	ISO	Function
GO:0000387	spliceosomal snRNP assembly	-	ISO	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0003730	mRNA 3'-UTR binding	25911097.	IDA	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006412	translation	-	IEA	Process
GO:0006417	regulation of translation	-	ISO	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0017069	snRNA binding	-	ISO	Function
GO:0022625	cytosolic large ribosomal subunit	-	ISO	Component
GO:0030619	U1 snRNA binding	-	ISO	Function
GO:0030621	U4 snRNA binding	-	ISO	Function
GO:0030622	U4atac snRNA binding	-	ISO	Function
GO:0032797	SMN complex	-	ISO	Component
GO:0034718	SMN-Gemin2 complex	-	ISO	Component
GO:0034719	SMN-Sm protein complex	-	ISO	Component
GO:0043022	ribosome binding	-	ISO	Function