EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000037296 (Gene tree)
Gene ID: 67207
Gene Symbol: Lsm1
Alias: 2810025O06Rik|U6 small nuclear RNA associated
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 18688 bases
Position: chr8:25785288-25803975
Accession: 1914457
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000041022	LSM	PF01423.22	4.4e-15	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000211670	-	600	-	ENSMUSP00000147348	43 (aa)	-	A0A1B0GR26
ENSMUST00000038421	-	2663	-	ENSMUSP00000041022	133 (aa)	-	Q8VC85
ENSMUST00000211168	-	343	-	ENSMUSP00000147832	21 (aa)	-	A0A1B0GS83
ENSMUST00000210647	-	672	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000037296's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000037296's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000037296	Lsm1	65	34.091	ENSMUSG00000044155	Lsm8	92	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000037296	Lsm1	100	97.744	ENSG00000175324	LSM1	100	97.744	Homo_sapiens
ENSMUSG00000037296	Lsm1	100	85.714	ENSAPOG00000010833	lsm1	100	85.714	Acanthochromis_polyacanthus
ENSMUSG00000037296	Lsm1	100	97.744	ENSAMEG00000011141	LSM1	100	97.744	Ailuropoda_melanoleuca
ENSMUSG00000037296	Lsm1	91	89.744	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSMUSG00000037296	Lsm1	100	85.714	ENSAOCG00000017997	-	100	85.714	Amphiprion_ocellaris
ENSMUSG00000037296	Lsm1	100	85.714	ENSAOCG00000017096	lsm1	100	85.714	Amphiprion_ocellaris
ENSMUSG00000037296	Lsm1	100	85.714	ENSAPEG00000011669	lsm1	100	85.714	Amphiprion_percula
ENSMUSG00000037296	Lsm1	100	84.211	ENSATEG00000022266	lsm1	100	84.211	Anabas_testudineus
ENSMUSG00000037296	Lsm1	100	97.744	ENSANAG00000027785	LSM1	100	97.744	Aotus_nancymaae
ENSMUSG00000037296	Lsm1	100	84.211	ENSACLG00000011400	lsm1	100	84.211	Astatotilapia_calliptera
ENSMUSG00000037296	Lsm1	91	94.872	ENSAMXG00000005441	lsm1	100	84.211	Astyanax_mexicanus
ENSMUSG00000037296	Lsm1	100	96.992	ENSBTAG00000001612	LSM1	100	96.992	Bos_taurus
ENSMUSG00000037296	Lsm1	86	72.973	WBGene00003076	lsm-1	73	58.065	Caenorhabditis_elegans
ENSMUSG00000037296	Lsm1	100	96.992	ENSCJAG00000048015	LSM1	100	96.992	Callithrix_jacchus
ENSMUSG00000037296	Lsm1	100	97.744	ENSCAFG00000006113	LSM1	100	97.744	Canis_familiaris
ENSMUSG00000037296	Lsm1	100	97.744	ENSCAFG00020001822	LSM1	100	97.744	Canis_lupus_dingo
ENSMUSG00000037296	Lsm1	100	97.744	ENSCHIG00000013194	LSM1	100	97.744	Capra_hircus
ENSMUSG00000037296	Lsm1	100	97.744	ENSTSYG00000010394	LSM1	100	97.744	Carlito_syrichta
ENSMUSG00000037296	Lsm1	100	97.744	ENSCPOG00000032671	LSM1	100	97.744	Cavia_porcellus
ENSMUSG00000037296	Lsm1	100	97.744	ENSCCAG00000037171	LSM1	100	97.744	Cebus_capucinus
ENSMUSG00000037296	Lsm1	100	97.744	ENSCATG00000020377	LSM1	100	97.744	Cercocebus_atys
ENSMUSG00000037296	Lsm1	100	97.744	ENSCLAG00000001137	LSM1	100	97.744	Chinchilla_lanigera
ENSMUSG00000037296	Lsm1	100	97.744	ENSCSAG00000015485	LSM1	100	97.744	Chlorocebus_sabaeus
ENSMUSG00000037296	Lsm1	100	96.992	ENSCHOG00000006030	LSM1	100	96.992	Choloepus_hoffmanni
ENSMUSG00000037296	Lsm1	95	86.614	ENSCPBG00000006569	LSM1	86	86.614	Chrysemys_picta_bellii
ENSMUSG00000037296	Lsm1	91	82.051	ENSCING00000013536	-	99	65.909	Ciona_intestinalis
ENSMUSG00000037296	Lsm1	100	97.744	ENSCANG00000019173	LSM1	100	97.744	Colobus_angolensis_palliatus
ENSMUSG00000037296	Lsm1	100	98.496	ENSCGRG00001024560	-	100	98.496	Cricetulus_griseus_chok1gshd
ENSMUSG00000037296	Lsm1	74	90.625	ENSCGRG00001002259	-	97	81.982	Cricetulus_griseus_chok1gshd
ENSMUSG00000037296	Lsm1	100	98.496	ENSCGRG00000006554	-	100	98.496	Cricetulus_griseus_crigri
ENSMUSG00000037296	Lsm1	74	90.625	ENSCGRG00000013603	-	97	81.982	Cricetulus_griseus_crigri
ENSMUSG00000037296	Lsm1	100	82.707	ENSCSEG00000008319	lsm1	92	82.707	Cynoglossus_semilaevis
ENSMUSG00000037296	Lsm1	100	83.459	ENSCSEG00000010570	lsm1	92	83.459	Cynoglossus_semilaevis
ENSMUSG00000037296	Lsm1	100	83.459	ENSCVAG00000003871	lsm1	100	83.459	Cyprinodon_variegatus
ENSMUSG00000037296	Lsm1	91	94.872	ENSDARG00000043177	lsm1	100	83.459	Danio_rerio
ENSMUSG00000037296	Lsm1	100	97.744	ENSDNOG00000046387	-	100	97.744	Dasypus_novemcinctus
ENSMUSG00000037296	Lsm1	89	77.311	ENSDNOG00000046620	-	100	77.311	Dasypus_novemcinctus
ENSMUSG00000037296	Lsm1	100	96.992	ENSDNOG00000032911	-	100	96.992	Dasypus_novemcinctus
ENSMUSG00000037296	Lsm1	100	91.729	ENSDNOG00000030989	-	100	91.729	Dasypus_novemcinctus
ENSMUSG00000037296	Lsm1	100	97.744	ENSDORG00000028172	Lsm1	100	97.744	Dipodomys_ordii
ENSMUSG00000037296	Lsm1	91	66.667	FBgn0261067	LSm1	91	62.903	Drosophila_melanogaster
ENSMUSG00000037296	Lsm1	100	97.744	ENSEASG00005016677	LSM1	100	97.744	Equus_asinus_asinus
ENSMUSG00000037296	Lsm1	100	97.744	ENSECAG00000010461	LSM1	100	97.744	Equus_caballus
ENSMUSG00000037296	Lsm1	91	97.436	ENSEEUG00000015181	LSM1	100	69.173	Erinaceus_europaeus
ENSMUSG00000037296	Lsm1	91	94.872	ENSELUG00000002322	lsm1	100	85.714	Esox_lucius
ENSMUSG00000037296	Lsm1	91	97.436	ENSELUG00000023374	lsm1	100	84.962	Esox_lucius
ENSMUSG00000037296	Lsm1	100	97.744	ENSFCAG00000039335	LSM1	100	97.744	Felis_catus
ENSMUSG00000037296	Lsm1	89	92.373	ENSFALG00000006723	LSM1	100	92.373	Ficedula_albicollis
ENSMUSG00000037296	Lsm1	100	97.744	ENSFDAG00000007658	LSM1	100	97.744	Fukomys_damarensis
ENSMUSG00000037296	Lsm1	100	83.459	ENSFHEG00000009556	lsm1	100	83.459	Fundulus_heteroclitus
ENSMUSG00000037296	Lsm1	100	83.459	ENSGMOG00000016651	lsm1	98	83.459	Gadus_morhua
ENSMUSG00000037296	Lsm1	100	90.977	ENSGALG00000003245	LSM1	100	90.977	Gallus_gallus
ENSMUSG00000037296	Lsm1	100	83.459	ENSGAFG00000011355	lsm1	100	83.459	Gambusia_affinis
ENSMUSG00000037296	Lsm1	100	83.459	ENSGACG00000011763	lsm1	98	83.459	Gasterosteus_aculeatus
ENSMUSG00000037296	Lsm1	100	93.233	ENSGAGG00000024065	LSM1	100	93.233	Gopherus_agassizii
ENSMUSG00000037296	Lsm1	100	97.744	ENSGGOG00000022658	LSM1	100	97.744	Gorilla_gorilla
ENSMUSG00000037296	Lsm1	100	84.211	ENSHBUG00000010897	lsm1	100	84.211	Haplochromis_burtoni
ENSMUSG00000037296	Lsm1	100	97.744	ENSHGLG00000005711	LSM1	100	97.744	Heterocephalus_glaber_female
ENSMUSG00000037296	Lsm1	100	79.699	ENSHGLG00000017574	-	100	79.699	Heterocephalus_glaber_female
ENSMUSG00000037296	Lsm1	100	97.744	ENSHGLG00100017660	LSM1	100	97.744	Heterocephalus_glaber_male
ENSMUSG00000037296	Lsm1	100	79.699	ENSHGLG00100012152	-	100	79.699	Heterocephalus_glaber_male
ENSMUSG00000037296	Lsm1	100	83.459	ENSHCOG00000017233	lsm1	100	83.459	Hippocampus_comes
ENSMUSG00000037296	Lsm1	91	94.872	ENSIPUG00000002312	LSM1	100	82.707	Ictalurus_punctatus
ENSMUSG00000037296	Lsm1	91	97.436	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSMUSG00000037296	Lsm1	100	96.241	ENSJJAG00000014605	-	100	96.241	Jaculus_jaculus
ENSMUSG00000037296	Lsm1	100	84.211	ENSKMAG00000003016	lsm1	100	84.211	Kryptolebias_marmoratus
ENSMUSG00000037296	Lsm1	100	84.211	ENSLBEG00000022352	lsm1	100	84.211	Labrus_bergylta
ENSMUSG00000037296	Lsm1	89	88.136	ENSLACG00000010947	LSM1	98	88.136	Latimeria_chalumnae
ENSMUSG00000037296	Lsm1	100	92.481	ENSLOCG00000015149	lsm1	100	92.481	Lepisosteus_oculatus
ENSMUSG00000037296	Lsm1	100	97.744	ENSLAFG00000003534	LSM1	100	97.744	Loxodonta_africana
ENSMUSG00000037296	Lsm1	100	97.744	ENSMFAG00000032661	LSM1	100	97.744	Macaca_fascicularis
ENSMUSG00000037296	Lsm1	100	97.744	ENSMLEG00000034535	LSM1	100	97.744	Mandrillus_leucophaeus
ENSMUSG00000037296	Lsm1	100	84.211	ENSMAMG00000007464	lsm1	100	84.211	Mastacembelus_armatus
ENSMUSG00000037296	Lsm1	100	84.211	ENSMZEG00005010321	lsm1	100	84.211	Maylandia_zebra
ENSMUSG00000037296	Lsm1	100	90.977	ENSMGAG00000002125	LSM1	100	90.977	Meleagris_gallopavo
ENSMUSG00000037296	Lsm1	100	96.992	ENSMICG00000030726	LSM1	100	96.992	Microcebus_murinus
ENSMUSG00000037296	Lsm1	100	98.496	ENSMOCG00000022817	Lsm1	100	98.496	Microtus_ochrogaster
ENSMUSG00000037296	Lsm1	100	84.962	ENSMMOG00000015466	lsm1	100	84.962	Mola_mola
ENSMUSG00000037296	Lsm1	100	95.489	ENSMODG00000010732	-	100	95.489	Monodelphis_domestica
ENSMUSG00000037296	Lsm1	91	89.744	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSMUSG00000037296	Lsm1	100	100.000	MGP_CAROLIEiJ_G0030930	Lsm1	100	100.000	Mus_caroli
ENSMUSG00000037296	Lsm1	100	100.000	MGP_PahariEiJ_G0021400	Lsm1	100	100.000	Mus_pahari
ENSMUSG00000037296	Lsm1	100	100.000	MGP_SPRETEiJ_G0032049	Lsm1	100	100.000	Mus_spretus
ENSMUSG00000037296	Lsm1	100	96.992	ENSMPUG00000009883	LSM1	100	96.992	Mustela_putorius_furo
ENSMUSG00000037296	Lsm1	100	96.992	ENSMLUG00000003734	LSM1	100	96.992	Myotis_lucifugus
ENSMUSG00000037296	Lsm1	100	96.992	ENSNGAG00000003753	Lsm1	100	96.992	Nannospalax_galili
ENSMUSG00000037296	Lsm1	91	89.744	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSMUSG00000037296	Lsm1	100	97.744	ENSNLEG00000029390	LSM1	100	97.744	Nomascus_leucogenys
ENSMUSG00000037296	Lsm1	100	95.489	ENSMEUG00000014077	LSM1	100	95.489	Notamacropus_eugenii
ENSMUSG00000037296	Lsm1	88	93.162	ENSOPRG00000000333	LSM1	100	93.162	Ochotona_princeps
ENSMUSG00000037296	Lsm1	100	97.744	ENSODEG00000004834	LSM1	100	97.744	Octodon_degus
ENSMUSG00000037296	Lsm1	100	84.211	ENSONIG00000010782	lsm1	100	84.211	Oreochromis_niloticus
ENSMUSG00000037296	Lsm1	100	94.737	ENSOANG00000003256	LSM1	100	94.737	Ornithorhynchus_anatinus
ENSMUSG00000037296	Lsm1	100	97.744	ENSOCUG00000015399	LSM1	100	97.744	Oryctolagus_cuniculus
ENSMUSG00000037296	Lsm1	100	84.962	ENSORLG00000030288	lsm1	100	84.962	Oryzias_latipes
ENSMUSG00000037296	Lsm1	100	84.962	ENSORLG00020003941	lsm1	100	84.962	Oryzias_latipes_hni
ENSMUSG00000037296	Lsm1	100	83.459	ENSORLG00020006213	-	86	83.459	Oryzias_latipes_hni
ENSMUSG00000037296	Lsm1	100	84.962	ENSORLG00015018350	lsm1	100	84.962	Oryzias_latipes_hsok
ENSMUSG00000037296	Lsm1	100	84.211	ENSOMEG00000012454	lsm1	100	84.211	Oryzias_melastigma
ENSMUSG00000037296	Lsm1	100	97.744	ENSOGAG00000015161	LSM1	100	97.744	Otolemur_garnettii
ENSMUSG00000037296	Lsm1	100	97.744	ENSOARG00000001317	LSM1	100	97.744	Ovis_aries
ENSMUSG00000037296	Lsm1	100	97.744	ENSPPAG00000032279	LSM1	100	97.744	Pan_paniscus
ENSMUSG00000037296	Lsm1	100	97.744	ENSPPRG00000014172	-	100	97.744	Panthera_pardus
ENSMUSG00000037296	Lsm1	100	97.744	ENSPTIG00000010289	LSM1	100	97.744	Panthera_tigris_altaica
ENSMUSG00000037296	Lsm1	100	97.744	ENSPTRG00000020169	LSM1	100	97.744	Pan_troglodytes
ENSMUSG00000037296	Lsm1	100	97.744	ENSPANG00000008814	LSM1	100	97.744	Papio_anubis
ENSMUSG00000037296	Lsm1	100	89.474	ENSPKIG00000001839	lsm1	100	89.474	Paramormyrops_kingsleyae
ENSMUSG00000037296	Lsm1	91	92.308	ENSPKIG00000019409	LSM1	99	82.707	Paramormyrops_kingsleyae
ENSMUSG00000037296	Lsm1	98	86.923	ENSPSIG00000012563	LSM1	99	86.923	Pelodiscus_sinensis
ENSMUSG00000037296	Lsm1	91	89.744	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSMUSG00000037296	Lsm1	85	77.876	ENSPMAG00000002671	lsm1	100	77.876	Petromyzon_marinus
ENSMUSG00000037296	Lsm1	100	93.985	ENSPCIG00000008880	LSM1	100	93.985	Phascolarctos_cinereus
ENSMUSG00000037296	Lsm1	100	83.459	ENSPFOG00000016029	lsm1	100	83.459	Poecilia_formosa
ENSMUSG00000037296	Lsm1	100	83.459	ENSPLAG00000007879	lsm1	100	83.459	Poecilia_latipinna
ENSMUSG00000037296	Lsm1	100	83.459	ENSPMEG00000023550	lsm1	100	83.459	Poecilia_mexicana
ENSMUSG00000037296	Lsm1	100	83.459	ENSPREG00000009574	lsm1	100	83.459	Poecilia_reticulata
ENSMUSG00000037296	Lsm1	100	97.744	ENSPPYG00000018521	LSM1	100	97.744	Pongo_abelii
ENSMUSG00000037296	Lsm1	100	97.744	ENSPCOG00000020901	-	100	97.744	Propithecus_coquereli
ENSMUSG00000037296	Lsm1	100	97.744	ENSPVAG00000006016	LSM1	100	97.744	Pteropus_vampyrus
ENSMUSG00000037296	Lsm1	100	84.211	ENSPNYG00000018067	lsm1	100	84.211	Pundamilia_nyererei
ENSMUSG00000037296	Lsm1	91	94.872	ENSPNAG00000013707	lsm1	100	83.459	Pygocentrus_nattereri
ENSMUSG00000037296	Lsm1	100	96.992	ENSRNOG00000015375	Lsm1	100	96.992	Rattus_norvegicus
ENSMUSG00000037296	Lsm1	100	97.744	ENSRBIG00000027449	LSM1	100	97.744	Rhinopithecus_bieti
ENSMUSG00000037296	Lsm1	100	97.744	ENSRROG00000036074	LSM1	100	97.744	Rhinopithecus_roxellana
ENSMUSG00000037296	Lsm1	87	42.149	YJL124C	LSM1	70	42.149	Saccharomyces_cerevisiae
ENSMUSG00000037296	Lsm1	100	95.489	ENSSHAG00000017260	LSM1	100	95.489	Sarcophilus_harrisii
ENSMUSG00000037296	Lsm1	100	90.977	ENSSFOG00015019528	lsm1	100	90.977	Scleropages_formosus
ENSMUSG00000037296	Lsm1	100	84.211	ENSSMAG00000004930	lsm1	100	84.211	Scophthalmus_maximus
ENSMUSG00000037296	Lsm1	100	84.211	ENSSDUG00000021823	lsm1	100	84.211	Seriola_dumerili
ENSMUSG00000037296	Lsm1	100	84.211	ENSSLDG00000012154	lsm1	100	84.211	Seriola_lalandi_dorsalis
ENSMUSG00000037296	Lsm1	100	93.233	ENSSPUG00000014878	LSM1	100	93.233	Sphenodon_punctatus
ENSMUSG00000037296	Lsm1	100	84.962	ENSSPAG00000020548	lsm1	100	84.962	Stegastes_partitus
ENSMUSG00000037296	Lsm1	100	97.744	ENSSSCG00000039058	LSM1	100	97.744	Sus_scrofa
ENSMUSG00000037296	Lsm1	100	92.481	ENSTGUG00000004793	LSM1	100	92.481	Taeniopygia_guttata
ENSMUSG00000037296	Lsm1	100	84.211	ENSTRUG00000025239	lsm1	100	84.211	Takifugu_rubripes
ENSMUSG00000037296	Lsm1	100	84.211	ENSTNIG00000004055	lsm1	100	84.211	Tetraodon_nigroviridis
ENSMUSG00000037296	Lsm1	88	96.581	ENSTBEG00000015884	LSM1	100	96.581	Tupaia_belangeri
ENSMUSG00000037296	Lsm1	100	97.744	ENSTTRG00000004482	LSM1	100	97.744	Tursiops_truncatus
ENSMUSG00000037296	Lsm1	100	97.744	ENSUAMG00000004103	LSM1	100	97.744	Ursus_americanus
ENSMUSG00000037296	Lsm1	100	97.744	ENSUMAG00000009132	LSM1	100	97.744	Ursus_maritimus
ENSMUSG00000037296	Lsm1	91	94.872	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSMUSG00000037296	Lsm1	100	97.744	ENSVVUG00000020191	LSM1	100	97.744	Vulpes_vulpes
ENSMUSG00000037296	Lsm1	91	61.538	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSMUSG00000037296	Lsm1	100	90.511	ENSXETG00000009004	lsm1	100	90.511	Xenopus_tropicalis
ENSMUSG00000037296	Lsm1	100	82.707	ENSXCOG00000015631	lsm1	100	82.707	Xiphophorus_couchianus
ENSMUSG00000037296	Lsm1	100	82.707	ENSXMAG00000026637	lsm1	100	82.707	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	21873635.	IBA	Process
GO:0000339	RNA cap binding	21873635.	IBA	Function
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	25456498.	IDA	Component
GO:0000956	nuclear-transcribed mRNA catabolic process	-	IEA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0005515	protein binding	23202588.	IPI	Function
GO:0005634	nucleus	18559850.	ISS	Component
GO:0005737	cytoplasm	18559850.	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016070	RNA metabolic process	21873635.	IBA	Process
GO:0019827	stem cell population maintenance	25456498.	IMP	Process
GO:0030424	axon	-	ISO	Component
GO:0030425	dendrite	-	ISO	Component
GO:0036002	pre-mRNA binding	-	ISO	Function
GO:0043025	neuronal cell body	-	ISO	Component
GO:0045665	negative regulation of neuron differentiation	25456498.	IMP	Process
GO:0071044	histone mRNA catabolic process	-	ISO	Process
GO:1990124	messenger ribonucleoprotein complex	-	ISO	Component
GO:1990726	Lsm1-7-Pat1 complex	21873635.	IBA	Component