EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000037361 (Gene tree)
Gene ID: 66055
Gene Symbol: Sf3b6
Alias: 0610009D07Rik|6030419K15Rik|Sf3b14
Full Name: splicing factor 3B%2C subunit 6
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 10116 bases
Position: chr12:4817544-4827659
Accession: 1913305
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000043662	RRM_1	PF00076.22	5.6e-16	1	1
ENSMUSP00000151723	RRM_1	PF00076.22	1e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000219128	-	334	-	ENSMUSP00000151723	111 (aa)	-	A0A1W2P7L7
ENSMUST00000218650	-	455	-	-	- (aa)	-	-
ENSMUST00000218705	-	460	-	-	- (aa)	-	-
ENSMUST00000046207	-	1180	-	ENSMUSP00000043662	125 (aa)	-	P59708
ENSMUST00000219359	-	1774	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000037361's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000037361's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000037361	Sf3b6	84	32.292	ENSMUSG00000028676	Srsf10	52	32.292

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000037361	Sf3b6	100	100.000	ENSG00000115128	SF3B6	100	100.000	Homo_sapiens
ENSMUSG00000037361	Sf3b6	100	98.400	ENSAPOG00000023788	sf3b6	100	98.400	Acanthochromis_polyacanthus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSAMEG00000002786	SF3B6	100	100.000	Ailuropoda_melanoleuca
ENSMUSG00000037361	Sf3b6	100	98.400	ENSACIG00000012608	sf3b6	100	98.400	Amphilophus_citrinellus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSAOCG00000013394	sf3b6	100	98.400	Amphiprion_ocellaris
ENSMUSG00000037361	Sf3b6	100	98.400	ENSAPEG00000015311	sf3b6	100	98.400	Amphiprion_percula
ENSMUSG00000037361	Sf3b6	100	98.400	ENSATEG00000016569	sf3b6	100	98.400	Anabas_testudineus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSACAG00000011677	SF3B6	100	100.000	Anolis_carolinensis
ENSMUSG00000037361	Sf3b6	100	100.000	ENSANAG00000027284	SF3B6	95	100.000	Aotus_nancymaae
ENSMUSG00000037361	Sf3b6	100	98.400	ENSACLG00000007793	sf3b6	100	98.400	Astatotilapia_calliptera
ENSMUSG00000037361	Sf3b6	100	100.000	ENSAMXG00000034888	sf3b6	100	100.000	Astyanax_mexicanus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSBTAG00000049128	-	100	98.400	Bos_taurus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSBTAG00000003407	SF3B6	100	100.000	Bos_taurus
ENSMUSG00000037361	Sf3b6	97	72.072	WBGene00016808	C50D2.5	91	68.000	Caenorhabditis_elegans
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCJAG00000007716	SF3B6	100	100.000	Callithrix_jacchus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCAFG00000003957	SF3B6	100	100.000	Canis_familiaris
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCAFG00020025576	SF3B6	100	100.000	Canis_lupus_dingo
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCHIG00000009902	SF3B6	100	100.000	Capra_hircus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSTSYG00000013978	SF3B6	100	100.000	Carlito_syrichta
ENSMUSG00000037361	Sf3b6	100	97.368	ENSCAPG00000016302	SF3B6	99	96.694	Cavia_aperea
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCPOG00000008016	SF3B6	100	100.000	Cavia_porcellus
ENSMUSG00000037361	Sf3b6	99	94.355	ENSCCAG00000018894	-	96	94.355	Cebus_capucinus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCCAG00000036653	SF3B6	100	100.000	Cebus_capucinus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCATG00000030936	SF3B6	100	100.000	Cercocebus_atys
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCLAG00000014512	SF3B6	100	100.000	Chinchilla_lanigera
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCSAG00000008390	SF3B6	100	100.000	Chlorocebus_sabaeus
ENSMUSG00000037361	Sf3b6	100	77.477	ENSCHOG00000013886	-	99	74.194	Choloepus_hoffmanni
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCHOG00000000689	SF3B6	100	100.000	Choloepus_hoffmanni
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCPBG00000020042	SF3B6	100	100.000	Chrysemys_picta_bellii
ENSMUSG00000037361	Sf3b6	98	80.488	ENSCING00000012689	-	97	80.488	Ciona_intestinalis
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCANG00000030559	SF3B6	100	100.000	Colobus_angolensis_palliatus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCGRG00001014595	Sf3b6	100	100.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000037361	Sf3b6	100	100.000	ENSCGRG00000005272	Sf3b6	100	100.000	Cricetulus_griseus_crigri
ENSMUSG00000037361	Sf3b6	100	97.600	ENSCSEG00000019017	sf3b6	100	97.600	Cynoglossus_semilaevis
ENSMUSG00000037361	Sf3b6	100	99.200	ENSCVAG00000005055	sf3b6	100	99.200	Cyprinodon_variegatus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSDARG00000009753	sf3b6	100	100.000	Danio_rerio
ENSMUSG00000037361	Sf3b6	100	100.000	ENSDNOG00000007148	SF3B6	100	100.000	Dasypus_novemcinctus
ENSMUSG00000037361	Sf3b6	100	84.071	ENSDORG00000027390	-	98	82.540	Dipodomys_ordii
ENSMUSG00000037361	Sf3b6	100	100.000	ENSDORG00000009772	Sf3b6	100	100.000	Dipodomys_ordii
ENSMUSG00000037361	Sf3b6	100	84.071	ENSDORG00000029761	-	98	82.540	Dipodomys_ordii
ENSMUSG00000037361	Sf3b6	97	76.577	FBgn0035692	Sf3b6	95	77.391	Drosophila_melanogaster
ENSMUSG00000037361	Sf3b6	98	91.071	ENSEBUG00000004424	sf3b6	91	92.174	Eptatretus_burgeri
ENSMUSG00000037361	Sf3b6	100	88.800	ENSEASG00005008061	-	100	88.800	Equus_asinus_asinus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSEASG00005009993	SF3B6	100	100.000	Equus_asinus_asinus
ENSMUSG00000037361	Sf3b6	82	84.615	ENSECAG00000027755	-	85	86.869	Equus_caballus
ENSMUSG00000037361	Sf3b6	81	96.040	ENSECAG00000015618	SF3B6	93	96.040	Equus_caballus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSELUG00000010379	sf3b6	100	98.400	Esox_lucius
ENSMUSG00000037361	Sf3b6	100	100.000	ENSFCAG00000031365	SF3B6	100	100.000	Felis_catus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSFALG00000001651	SF3B6	100	100.000	Ficedula_albicollis
ENSMUSG00000037361	Sf3b6	100	100.000	ENSFDAG00000007864	SF3B6	100	100.000	Fukomys_damarensis
ENSMUSG00000037361	Sf3b6	100	99.200	ENSFHEG00000000685	sf3b6	100	99.200	Fundulus_heteroclitus
ENSMUSG00000037361	Sf3b6	100	97.600	ENSGMOG00000005123	sf3b6	100	97.600	Gadus_morhua
ENSMUSG00000037361	Sf3b6	78	96.667	ENSGALG00000016501	SF3B6	100	100.000	Gallus_gallus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSGAFG00000009334	sf3b6	100	98.400	Gambusia_affinis
ENSMUSG00000037361	Sf3b6	100	97.600	ENSGACG00000004803	sf3b6	100	97.600	Gasterosteus_aculeatus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSGAGG00000012240	SF3B6	100	100.000	Gopherus_agassizii
ENSMUSG00000037361	Sf3b6	100	100.000	ENSGGOG00000040806	SF3B6	100	100.000	Gorilla_gorilla
ENSMUSG00000037361	Sf3b6	100	98.400	ENSHBUG00000012556	sf3b6	100	98.400	Haplochromis_burtoni
ENSMUSG00000037361	Sf3b6	100	100.000	ENSHGLG00000014895	SF3B14	100	100.000	Heterocephalus_glaber_female
ENSMUSG00000037361	Sf3b6	100	100.000	ENSHGLG00100008639	SF3B14	100	100.000	Heterocephalus_glaber_male
ENSMUSG00000037361	Sf3b6	100	99.200	ENSHCOG00000019962	sf3b6	100	99.200	Hippocampus_comes
ENSMUSG00000037361	Sf3b6	100	100.000	ENSIPUG00000023800	sf3b6	100	100.000	Ictalurus_punctatus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSJJAG00000021819	Sf3b6	100	100.000	Jaculus_jaculus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSKMAG00000004000	sf3b6	100	98.400	Kryptolebias_marmoratus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSLBEG00000022937	sf3b6	100	98.400	Labrus_bergylta
ENSMUSG00000037361	Sf3b6	100	100.000	ENSLACG00000014326	SF3B6	100	100.000	Latimeria_chalumnae
ENSMUSG00000037361	Sf3b6	100	100.000	ENSLOCG00000016481	sf3b6	100	100.000	Lepisosteus_oculatus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSLAFG00000029423	SF3B6	100	100.000	Loxodonta_africana
ENSMUSG00000037361	Sf3b6	100	100.000	ENSMFAG00000038178	SF3B6	100	100.000	Macaca_fascicularis
ENSMUSG00000037361	Sf3b6	100	100.000	ENSMMUG00000001282	SF3B6	100	100.000	Macaca_mulatta
ENSMUSG00000037361	Sf3b6	100	100.000	ENSMNEG00000029050	SF3B6	100	100.000	Macaca_nemestrina
ENSMUSG00000037361	Sf3b6	100	100.000	ENSMLEG00000019896	SF3B6	100	100.000	Mandrillus_leucophaeus
ENSMUSG00000037361	Sf3b6	78	96.907	ENSMAMG00000007713	sf3b6	88	96.907	Mastacembelus_armatus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSMZEG00005003557	sf3b6	100	98.400	Maylandia_zebra
ENSMUSG00000037361	Sf3b6	100	100.000	ENSMGAG00000014057	SF3B6	100	100.000	Meleagris_gallopavo
ENSMUSG00000037361	Sf3b6	100	100.000	ENSMAUG00000000586	-	100	100.000	Mesocricetus_auratus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSMICG00000032874	SF3B6	100	100.000	Microcebus_murinus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSMOCG00000014338	Sf3b6	100	100.000	Microtus_ochrogaster
ENSMUSG00000037361	Sf3b6	100	99.200	ENSMMOG00000015653	sf3b6	100	99.200	Mola_mola
ENSMUSG00000037361	Sf3b6	100	92.800	ENSMODG00000002144	SF3B6	100	92.800	Monodelphis_domestica
ENSMUSG00000037361	Sf3b6	100	99.200	ENSMALG00000019642	sf3b6	67	99.200	Monopterus_albus
ENSMUSG00000037361	Sf3b6	100	100.000	MGP_CAROLIEiJ_G0017590	Sf3b6	100	100.000	Mus_caroli
ENSMUSG00000037361	Sf3b6	100	100.000	MGP_PahariEiJ_G0029348	Sf3b6	100	100.000	Mus_pahari
ENSMUSG00000037361	Sf3b6	100	100.000	MGP_SPRETEiJ_G0018434	Sf3b6	100	100.000	Mus_spretus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSMPUG00000013957	SF3B6	100	100.000	Mustela_putorius_furo
ENSMUSG00000037361	Sf3b6	100	98.400	ENSMLUG00000002473	SF3B6	100	98.400	Myotis_lucifugus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSNGAG00000020256	Sf3b6	100	100.000	Nannospalax_galili
ENSMUSG00000037361	Sf3b6	100	98.400	ENSNBRG00000018244	sf3b6	100	98.400	Neolamprologus_brichardi
ENSMUSG00000037361	Sf3b6	100	100.000	ENSNLEG00000000815	-	100	100.000	Nomascus_leucogenys
ENSMUSG00000037361	Sf3b6	95	97.222	ENSODEG00000009547	SF3B6	92	100.000	Octodon_degus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSONIG00000001219	sf3b6	100	98.400	Oreochromis_niloticus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSOANG00000007627	SF3B6	100	100.000	Ornithorhynchus_anatinus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSOCUG00000022008	SF3B6	100	100.000	Oryctolagus_cuniculus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSORLG00000015955	sf3b6	100	98.400	Oryzias_latipes
ENSMUSG00000037361	Sf3b6	100	98.400	ENSORLG00020005875	sf3b6	100	98.400	Oryzias_latipes_hni
ENSMUSG00000037361	Sf3b6	100	98.400	ENSORLG00015001347	sf3b6	100	98.400	Oryzias_latipes_hsok
ENSMUSG00000037361	Sf3b6	100	98.400	ENSOMEG00000014506	sf3b6	100	98.400	Oryzias_melastigma
ENSMUSG00000037361	Sf3b6	100	100.000	ENSOGAG00000004468	SF3B6	100	100.000	Otolemur_garnettii
ENSMUSG00000037361	Sf3b6	100	100.000	ENSOARG00000017819	SF3B6	100	100.000	Ovis_aries
ENSMUSG00000037361	Sf3b6	100	100.000	ENSPPAG00000027816	SF3B6	100	100.000	Pan_paniscus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSPPRG00000023257	SF3B6	100	100.000	Panthera_pardus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSPTIG00000013322	SF3B6	100	100.000	Panthera_tigris_altaica
ENSMUSG00000037361	Sf3b6	100	100.000	ENSPTRG00000011709	SF3B6	100	100.000	Pan_troglodytes
ENSMUSG00000037361	Sf3b6	100	100.000	ENSPANG00000021963	SF3B6	100	100.000	Papio_anubis
ENSMUSG00000037361	Sf3b6	100	100.000	ENSPKIG00000012311	sf3b6	100	100.000	Paramormyrops_kingsleyae
ENSMUSG00000037361	Sf3b6	100	97.368	ENSPSIG00000017115	SF3B6	100	100.000	Pelodiscus_sinensis
ENSMUSG00000037361	Sf3b6	78	96.907	ENSPMGG00000014621	sf3b6	81	96.907	Periophthalmus_magnuspinnatus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSPEMG00000010308	Sf3b6	100	100.000	Peromyscus_maniculatus_bairdii
ENSMUSG00000037361	Sf3b6	98	88.393	ENSPMAG00000006008	sf3b6	94	88.136	Petromyzon_marinus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSPCIG00000022128	-	100	100.000	Phascolarctos_cinereus
ENSMUSG00000037361	Sf3b6	99	77.419	ENSPCIG00000015858	-	99	77.419	Phascolarctos_cinereus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSPFOG00000012494	sf3b6	100	98.400	Poecilia_formosa
ENSMUSG00000037361	Sf3b6	100	98.400	ENSPLAG00000020460	sf3b6	100	98.400	Poecilia_latipinna
ENSMUSG00000037361	Sf3b6	100	98.400	ENSPMEG00000004426	sf3b6	100	98.400	Poecilia_mexicana
ENSMUSG00000037361	Sf3b6	100	100.000	ENSPPYG00000012603	SF3B6	100	100.000	Pongo_abelii
ENSMUSG00000037361	Sf3b6	100	100.000	ENSPVAG00000011346	SF3B6	100	100.000	Pteropus_vampyrus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSPNYG00000021832	sf3b6	100	98.400	Pundamilia_nyererei
ENSMUSG00000037361	Sf3b6	100	100.000	ENSPNAG00000008845	sf3b6	100	100.000	Pygocentrus_nattereri
ENSMUSG00000037361	Sf3b6	100	84.800	ENSRNOG00000046172	Sf3b6	100	84.800	Rattus_norvegicus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSRBIG00000039598	SF3B6	100	100.000	Rhinopithecus_bieti
ENSMUSG00000037361	Sf3b6	100	100.000	ENSRROG00000011368	SF3B6	100	100.000	Rhinopithecus_roxellana
ENSMUSG00000037361	Sf3b6	100	100.000	ENSSBOG00000002914	SF3B6	100	100.000	Saimiri_boliviensis_boliviensis
ENSMUSG00000037361	Sf3b6	100	100.000	ENSSFOG00015014370	sf3b6	100	100.000	Scleropages_formosus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSSMAG00000004566	sf3b6	100	98.400	Scophthalmus_maximus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSSDUG00000006538	sf3b6	100	98.400	Seriola_dumerili
ENSMUSG00000037361	Sf3b6	100	98.400	ENSSLDG00000004494	sf3b6	100	98.400	Seriola_lalandi_dorsalis
ENSMUSG00000037361	Sf3b6	100	100.000	ENSSARG00000011902	-	100	100.000	Sorex_araneus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSSPUG00000014919	SF3B6	100	100.000	Sphenodon_punctatus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSSPAG00000013201	sf3b6	100	98.400	Stegastes_partitus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSSSCG00000008587	SF3B6	100	100.000	Sus_scrofa
ENSMUSG00000037361	Sf3b6	100	100.000	ENSTGUG00000013191	SF3B6	100	100.000	Taeniopygia_guttata
ENSMUSG00000037361	Sf3b6	100	98.400	ENSTRUG00000025286	sf3b6	100	98.400	Takifugu_rubripes
ENSMUSG00000037361	Sf3b6	100	98.400	ENSTNIG00000009719	sf3b6	100	98.400	Tetraodon_nigroviridis
ENSMUSG00000037361	Sf3b6	100	97.368	ENSTBEG00000012532	SF3B6	100	100.000	Tupaia_belangeri
ENSMUSG00000037361	Sf3b6	100	97.368	ENSTTRG00000013430	SF3B6	100	100.000	Tursiops_truncatus
ENSMUSG00000037361	Sf3b6	100	81.746	ENSUAMG00000000978	-	100	81.746	Ursus_americanus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSUAMG00000025329	SF3B6	100	100.000	Ursus_americanus
ENSMUSG00000037361	Sf3b6	100	100.000	ENSUMAG00000022835	SF3B6	100	100.000	Ursus_maritimus
ENSMUSG00000037361	Sf3b6	100	97.368	ENSVPAG00000005546	SF3B6	100	100.000	Vicugna_pacos
ENSMUSG00000037361	Sf3b6	100	100.000	ENSVVUG00000010874	SF3B6	100	100.000	Vulpes_vulpes
ENSMUSG00000037361	Sf3b6	100	99.200	ENSXETG00000018204	sf3b6	100	99.200	Xenopus_tropicalis
ENSMUSG00000037361	Sf3b6	77	97.674	ENSXCOG00000008477	sf3b6	88	85.841	Xiphophorus_couchianus
ENSMUSG00000037361	Sf3b6	100	98.400	ENSXMAG00000010747	sf3b6	100	98.400	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	23211737.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0001825	blastocyst formation	23211737.27869233.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0005634	nucleus	23211737.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component