EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000225720	-	3468	XM_006518450	ENSMUSP00000153488	396 (aa)	XP_006518513	Q91X83
ENSMUST00000047286	-	3208	-	ENSMUSP00000044288	396 (aa)	-	Q91X83
ENSMUST00000224514	-	747	-	ENSMUSP00000152905	186 (aa)	-	A0A286YCQ9

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00270	Cysteine and methionine metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01230	Biosynthesis of amino acids	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000037798	Mat1a	90	75.595	WBGene00008205	sams-1	93	69.947	Caenorhabditis_elegans
ENSMUSG00000037798	Mat1a	100	84.343	ENSMUSG00000053907	Mat2a	100	84.573	Mus_musculus
ENSMUSG00000037798	Mat1a	91	74.118	YLR180W	SAM1	99	68.421	Saccharomyces_cerevisiae
ENSMUSG00000037798	Mat1a	94	72.989	YDR502C	SAM2	100	67.708	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000287	magnesium ion binding	-	ISO	Function
GO:0004478	methionine adenosyltransferase activity	21873635.	IBA	Function
GO:0004478	methionine adenosyltransferase activity	-	ISO	Function
GO:0004478	methionine adenosyltransferase activity	8314764.	TAS	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006556	S-adenosylmethionine biosynthetic process	-	ISO	Process
GO:0006730	one-carbon metabolic process	-	IEA	Process
GO:0009087	methionine catabolic process	-	ISO	Process
GO:0016363	nuclear matrix	-	ISO	Component
GO:0016597	amino acid binding	-	ISO	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0043531	ADP binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0046983	protein dimerization activity	-	ISO	Function
GO:0051260	protein homooligomerization	-	ISO	Process
GO:0051262	protein tetramerization	-	ISO	Process
GO:0051289	protein homotetramerization	-	ISO	Process