EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000037815 (Gene tree)
Gene ID: 12385
Gene Symbol: Ctnna1
Alias: 2010010M04Rik|Catna1|alpha E catenin|alpha(E)-catenin
Full Name: catenin (cadherin associated protein)%2C alpha 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 135886
Position: chr18: 35118888-35254773
Accession: 88274
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000042345	-	3698	XM_006525548	ENSMUSP00000049007	906 (aa)	XP_006525611	P26231

Gene Model

Click here to download ENSMUSG00000037815's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04390	Hippo signaling pathway	KEGG
mmu04520	Adherens junction	KEGG
mmu04670	Leukocyte transendothelial migration	KEGG
mmu05100	Bacterial invasion of epithelial cells	KEGG
mmu05200	Pathways in cancer	KEGG
mmu05213	Endometrial cancer	KEGG
mmu05226	Gastric cancer	KEGG
mmu05412	Arrhythmogenic right ventricular cardiomyopathy (ARVC)	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000037815's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000037815	Ctnna1	100	99.448	ENSG00000044115	CTNNA1	100	100.000	Homo_sapiens
ENSMUSG00000037815	Ctnna1	51	33.529	ENSG00000035403	VCL	59	33.529	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001669	acrosomal vesicle	-	ISO	Component
GO:0005198	structural molecule activity	-	IEA	Function
GO:0005515	protein binding	9264463.10882138.10974003.14579029.14647292.	IPI	Function
GO:0005737	cytoplasm	-	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	8853988.	IDA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005911	cell-cell junction	-	ISO	Component
GO:0005912	adherens junction	12695331.18195371.	IDA	Component
GO:0005913	cell-cell adherens junction	15775979.	IDA	Component
GO:0005913	cell-cell adherens junction	-	ISO	Component
GO:0005915	zonula adherens	11025210.	IDA	Component
GO:0007015	actin filament organization	-	IEA	Process
GO:0007155	cell adhesion	-	IEA	Process
GO:0007163	establishment or maintenance of cell polarity	16543460.	IMP	Process
GO:0007406	negative regulation of neuroblast proliferation	16543460.	IGI	Process
GO:0007406	negative regulation of neuroblast proliferation	16543460.	IMP	Process
GO:0008013	beta-catenin binding	-	ISO	Function
GO:0014704	intercalated disc	17535849.	IDA	Component
GO:0015629	actin cytoskeleton	-	IEA	Component
GO:0016020	membrane	-	IEA	Component
GO:0016264	gap junction assembly	-	ISO	Process
GO:0016342	catenin complex	-	ISO	Component
GO:0016600	flotillin complex	24046456.	IDA	Component
GO:0017166	vinculin binding	-	ISO	Function
GO:0030027	lamellipodium	14657280.	IDA	Component
GO:0030054	cell junction	-	ISO	Component
GO:0034613	cellular protein localization	22411810.	IMP	Process
GO:0042127	regulation of cell proliferation	17989230.	IGI	Process
GO:0042802	identical protein binding	23417122.	IPI	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0043066	negative regulation of apoptotic process	16543460.	IMP	Process
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0043297	apical junction assembly	16543460.22411810.	IMP	Process
GO:0045295	gamma-catenin binding	-	ISO	Function
GO:0045296	cadherin binding	-	ISO	Function
GO:0045880	positive regulation of smoothened signaling pathway	16543460.	IGI	Process
GO:0046982	protein heterodimerization activity	8853988.	IDA	Function
GO:0051015	actin filament binding	11795944.	IDA	Function
GO:0051291	protein heterooligomerization	-	ISO	Process
GO:0071681	cellular response to indole-3-methanol	-	ISO	Process
GO:0090136	epithelial cell-cell adhesion	22411810.	IMP	Process
GO:2000146	negative regulation of cell motility	22411810.	IMP	Process
GO:2001045	negative regulation of integrin-mediated signaling pathway	22411810.	IMP	Process
GO:2001240	negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	22411810.	IMP	Process
GO:2001241	positive regulation of extrinsic apoptotic signaling pathway in absence of ligand	22411810.	IMP	Process