EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000037921 (Gene tree)
Gene ID: 234311
Gene Symbol: Ddx60
Alias: -
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 110158 bases
Position: chr8:61928087-62038244
Accession: 2384570
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000070741	ResIII	PF04851.15	3.2e-10	1	1
ENSMUSP00000091197	ResIII	PF04851.15	3.3e-10	1	1
ENSMUSP00000070741	DEAD	PF00270.29	1e-15	1	1
ENSMUSP00000091197	DEAD	PF00270.29	1e-15	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000070631	-	6535	XM_006509393	ENSMUSP00000070741	1710 (aa)	XP_006509456	G3X9F7
ENSMUST00000153806	-	427	-	-	- (aa)	-	-
ENSMUST00000154398	-	2120	XM_017312698	ENSMUSP00000122841	573 (aa)	XP_017168187	D3Z3B3
ENSMUST00000136121	-	3068	-	-	- (aa)	-	-
ENSMUST00000093485	-	5989	-	ENSMUSP00000091197	1711 (aa)	-	E9PZQ1
ENSMUST00000156980	-	605	-	ENSMUSP00000120424	69 (aa)	-	D3YZ76

Gene Model

Click here to download ENSMUSG00000037921's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000037921's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000037921	Ddx60	99	75.220	ENSG00000137628	DDX60	95	82.301	Homo_sapiens
ENSMUSG00000037921	Ddx60	99	74.545	ENSAMEG00000013429	DDX60	99	74.545	Ailuropoda_melanoleuca
ENSMUSG00000037921	Ddx60	82	56.144	ENSAPLG00000007120	DDX60	100	56.144	Anas_platyrhynchos
ENSMUSG00000037921	Ddx60	99	55.517	ENSACAG00000016010	DDX60	97	55.517	Anolis_carolinensis
ENSMUSG00000037921	Ddx60	99	74.810	ENSANAG00000030883	DDX60	100	76.918	Aotus_nancymaae
ENSMUSG00000037921	Ddx60	99	74.649	ENSCJAG00000004726	DDX60	100	76.989	Callithrix_jacchus
ENSMUSG00000037921	Ddx60	99	73.870	ENSCAFG00000009003	DDX60	99	73.870	Canis_familiaris
ENSMUSG00000037921	Ddx60	59	73.096	ENSTSYG00000011545	-	99	73.096	Carlito_syrichta
ENSMUSG00000037921	Ddx60	95	65.821	ENSCAPG00000006504	DDX60	100	64.620	Cavia_aperea
ENSMUSG00000037921	Ddx60	97	73.579	ENSCPOG00000008326	DDX60	96	73.579	Cavia_porcellus
ENSMUSG00000037921	Ddx60	99	74.824	ENSCCAG00000034674	DDX60	99	74.824	Cebus_capucinus
ENSMUSG00000037921	Ddx60	99	75.278	ENSCATG00000038859	DDX60	99	75.278	Cercocebus_atys
ENSMUSG00000037921	Ddx60	99	73.419	ENSCLAG00000015332	DDX60	99	73.419	Chinchilla_lanigera
ENSMUSG00000037921	Ddx60	99	75.220	ENSCSAG00000003155	DDX60	99	75.220	Chlorocebus_sabaeus
ENSMUSG00000037921	Ddx60	92	65.948	ENSCPBG00000001510	-	99	65.948	Chrysemys_picta_bellii
ENSMUSG00000037921	Ddx60	98	60.274	ENSCPBG00000027534	DDX60	95	60.274	Chrysemys_picta_bellii
ENSMUSG00000037921	Ddx60	99	75.278	ENSCANG00000032267	DDX60	99	75.278	Colobus_angolensis_palliatus
ENSMUSG00000037921	Ddx60	100	82.720	ENSCGRG00001018201	Ddx60	100	82.720	Cricetulus_griseus_chok1gshd
ENSMUSG00000037921	Ddx60	100	82.720	ENSCGRG00000005295	Ddx60	100	82.720	Cricetulus_griseus_crigri
ENSMUSG00000037921	Ddx60	99	74.109	ENSDNOG00000008454	DDX60	99	74.109	Dasypus_novemcinctus
ENSMUSG00000037921	Ddx60	99	75.483	ENSEASG00005021849	DDX60	99	75.483	Equus_asinus_asinus
ENSMUSG00000037921	Ddx60	99	52.118	ENSECAG00000032492	-	95	52.118	Equus_caballus
ENSMUSG00000037921	Ddx60	97	75.302	ENSECAG00000024167	DDX60	95	75.302	Equus_caballus
ENSMUSG00000037921	Ddx60	95	59.175	ENSEEUG00000010236	DDX60	95	59.175	Erinaceus_europaeus
ENSMUSG00000037921	Ddx60	99	73.724	ENSFCAG00000010766	DDX60	99	73.724	Felis_catus
ENSMUSG00000037921	Ddx60	99	53.372	ENSGALG00000009639	DDX60	93	53.372	Gallus_gallus
ENSMUSG00000037921	Ddx60	95	77.134	ENSGGOG00000012801	DDX60	99	77.134	Gorilla_gorilla
ENSMUSG00000037921	Ddx60	83	73.362	ENSHGLG00000013790	DDX60	99	73.362	Heterocephalus_glaber_female
ENSMUSG00000037921	Ddx60	83	73.432	ENSHGLG00100002763	-	99	73.432	Heterocephalus_glaber_male
ENSMUSG00000037921	Ddx60	86	75.932	ENSSTOG00000016257	DDX60	100	75.932	Ictidomys_tridecemlineatus
ENSMUSG00000037921	Ddx60	72	55.635	ENSLACG00000017399	DDX60	99	55.635	Latimeria_chalumnae
ENSMUSG00000037921	Ddx60	99	75.337	ENSMFAG00000016136	DDX60	99	75.337	Macaca_fascicularis
ENSMUSG00000037921	Ddx60	99	75.454	ENSMMUG00000001880	DDX60	99	75.454	Macaca_mulatta
ENSMUSG00000037921	Ddx60	99	72.222	ENSMNEG00000030573	DDX60	99	72.222	Macaca_nemestrina
ENSMUSG00000037921	Ddx60	99	75.533	ENSMLEG00000030919	DDX60	100	75.533	Mandrillus_leucophaeus
ENSMUSG00000037921	Ddx60	99	53.076	ENSMGAG00000002432	DDX60	100	53.076	Meleagris_gallopavo
ENSMUSG00000037921	Ddx60	99	83.489	ENSMAUG00000016664	Ddx60	99	83.489	Mesocricetus_auratus
ENSMUSG00000037921	Ddx60	99	71.370	ENSMICG00000013542	DDX60	99	71.370	Microcebus_murinus
ENSMUSG00000037921	Ddx60	99	81.181	ENSMOCG00000007646	-	99	81.181	Microtus_ochrogaster
ENSMUSG00000037921	Ddx60	100	76.928	ENSMOCG00000008571	-	100	78.609	Microtus_ochrogaster
ENSMUSG00000037921	Ddx60	99	60.689	ENSMODG00000002645	DDX60	99	60.712	Monodelphis_domestica
ENSMUSG00000037921	Ddx60	100	96.082	MGP_CAROLIEiJ_G0031080	Ddx60	100	96.082	Mus_caroli
ENSMUSG00000037921	Ddx60	99	75.822	ENSMPUG00000007710	DDX60	99	75.822	Mustela_putorius_furo
ENSMUSG00000037921	Ddx60	99	74.542	ENSMLUG00000007300	DDX60	99	74.542	Myotis_lucifugus
ENSMUSG00000037921	Ddx60	99	74.634	ENSNLEG00000006542	DDX60	99	74.634	Nomascus_leucogenys
ENSMUSG00000037921	Ddx60	90	58.694	ENSOANG00000007454	DDX60	99	58.915	Ornithorhynchus_anatinus
ENSMUSG00000037921	Ddx60	69	49.582	ENSOANG00000028702	-	99	49.178	Ornithorhynchus_anatinus
ENSMUSG00000037921	Ddx60	98	50.589	ENSOCUG00000020913	-	99	50.589	Oryctolagus_cuniculus
ENSMUSG00000037921	Ddx60	59	50.688	ENSOCUG00000022101	-	99	50.688	Oryctolagus_cuniculus
ENSMUSG00000037921	Ddx60	99	74.137	ENSOCUG00000006355	DDX60	99	74.137	Oryctolagus_cuniculus
ENSMUSG00000037921	Ddx60	69	73.968	ENSPPAG00000040254	-	99	73.968	Pan_paniscus
ENSMUSG00000037921	Ddx60	99	74.956	ENSPPRG00000009286	DDX60	99	74.956	Panthera_pardus
ENSMUSG00000037921	Ddx60	99	74.956	ENSPTIG00000022042	DDX60	99	74.956	Panthera_tigris_altaica
ENSMUSG00000037921	Ddx60	99	75.571	ENSPTRG00000016581	DDX60	99	75.571	Pan_troglodytes
ENSMUSG00000037921	Ddx60	99	75.337	ENSPANG00000019535	DDX60	99	75.337	Papio_anubis
ENSMUSG00000037921	Ddx60	99	59.545	ENSPSIG00000004307	DDX60	99	59.603	Pelodiscus_sinensis
ENSMUSG00000037921	Ddx60	100	78.446	ENSPEMG00000023735	-	100	78.329	Peromyscus_maniculatus_bairdii
ENSMUSG00000037921	Ddx60	99	72.994	ENSPPYG00000015184	DDX60	98	72.994	Pongo_abelii
ENSMUSG00000037921	Ddx60	77	77.778	ENSPCAG00000002661	-	78	77.778	Procavia_capensis
ENSMUSG00000037921	Ddx60	89	61.491	ENSPCAG00000000925	-	92	61.491	Procavia_capensis
ENSMUSG00000037921	Ddx60	95	71.130	ENSPCOG00000008412	DDX60	98	71.337	Propithecus_coquereli
ENSMUSG00000037921	Ddx60	99	71.128	ENSPVAG00000011428	DDX60	99	71.128	Pteropus_vampyrus
ENSMUSG00000037921	Ddx60	80	85.829	ENSRNOG00000059097	AABR07025140.1	99	85.829	Rattus_norvegicus
ENSMUSG00000037921	Ddx60	95	77.223	ENSRBIG00000034414	DDX60	100	77.223	Rhinopithecus_bieti
ENSMUSG00000037921	Ddx60	99	75.103	ENSRROG00000030767	DDX60	99	75.103	Rhinopithecus_roxellana
ENSMUSG00000037921	Ddx60	99	72.488	ENSSBOG00000024856	DDX60	99	72.488	Saimiri_boliviensis_boliviensis
ENSMUSG00000037921	Ddx60	99	62.478	ENSSHAG00000016219	DDX60	99	62.478	Sarcophilus_harrisii
ENSMUSG00000037921	Ddx60	88	65.485	ENSSARG00000002474	-	91	65.485	Sorex_araneus
ENSMUSG00000037921	Ddx60	79	65.011	ENSSPUG00000019257	DDX60	95	70.154	Sphenodon_punctatus
ENSMUSG00000037921	Ddx60	99	73.564	ENSSSCG00000009720	DDX60	99	73.564	Sus_scrofa
ENSMUSG00000037921	Ddx60	88	75.433	ENSTTRG00000016129	DDX60	88	75.433	Tursiops_truncatus
ENSMUSG00000037921	Ddx60	99	74.882	ENSUMAG00000020219	DDX60	99	74.661	Ursus_maritimus
ENSMUSG00000037921	Ddx60	99	73.459	ENSVVUG00000023953	DDX60	99	73.459	Vulpes_vulpes
ENSMUSG00000037921	Ddx60	98	48.975	ENSXETG00000031597	-	99	49.092	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003690	double-stranded DNA binding	-	ISO	Function
GO:0003723	RNA binding	21791617.	IDA	Function
GO:0003725	double-stranded RNA binding	-	ISO	Function
GO:0003727	single-stranded RNA binding	-	ISO	Function
GO:0005515	protein binding	21791617.	IPI	Function
GO:0005737	cytoplasm	21791617.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0009615	response to virus	-	ISO	Process
GO:0045111	intermediate filament cytoskeleton	-	ISO	Component
GO:0051607	defense response to virus	21791617.	IDA	Process
GO:1900245	positive regulation of MDA-5 signaling pathway	-	ISO	Process
GO:1900246	positive regulation of RIG-I signaling pathway	-	ISO	Process