EuRBPDB

Description

Ensembl ID: ENSMUSG00000037935 (Gene tree)
Gene ID: 57376
Gene Symbol: Smarce1
Alias: 2810417B20Rik|5830412H02Rik|9030408N19Rik|BAF57
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily e%2C member 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 21971
Position: chr11: 99209047-99231017
Accession: 1927347
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000128707	-	456	-	-	- (aa)	-	-
ENSMUST00000135040	-	761	-	-	- (aa)	-	-
ENSMUST00000155062	-	481	-	-	- (aa)	-	-
ENSMUST00000156160	-	610	-	-	- (aa)	-	-
ENSMUST00000103133	-	2919	XM_006533827	ENSMUSP00000099422	411 (aa)	XP_006533890	O54941
ENSMUST00000128215	-	3117	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04714	Thermogenesis	KEGG
mmu05225	Hepatocellular carcinoma	KEGG

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003723	RNA binding	21936910.	IDA	Function
GO:0005515	protein binding	16287714.19781646.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006337	nucleosome disassembly	-	ISO	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0007399	nervous system development	-	IEA	Process
GO:0008080	N-acetyltransferase activity	-	ISO	Function
GO:0016514	SWI/SNF complex	16287714.	IDA	Component
GO:0016514	SWI/SNF complex	-	ISO	Component
GO:0016922	nuclear receptor binding	-	ISO	Function
GO:0022008	neurogenesis	19781646.	IGI	Process
GO:0043044	ATP-dependent chromatin remodeling	-	IEA	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0071564	npBAF complex	17640523.	IDA	Component
GO:0071565	nBAF complex	17640523.	IDA	Component