EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038095 (Gene tree)
Gene ID: 243272
Gene Symbol: Sbno1
Alias: 9330180L10Rik|sno
Full Name: strawberry notch 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 57300 bases
Position: chr5:124368702-124426001
Accession: 2384298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000143084	ResIII	PF04851.15	2.6e-07	1	1
ENSMUSP00000143516	ResIII	PF04851.15	2.8e-07	1	1
ENSMUSP00000142827	ResIII	PF04851.15	3.3e-07	1	1
ENSMUSP00000066808	ResIII	PF04851.15	4.6e-07	1	1
ENSMUSP00000142481	ResIII	PF04851.15	4.6e-07	1	1
ENSMUSP00000130860	ResIII	PF04851.15	4.6e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000196711	-	772	-	ENSMUSP00000142980	211 (aa)	-	A0A0G2JF11
ENSMUST00000196644	-	2511	-	ENSMUSP00000142827	785 (aa)	-	A0A0G2JEM3
ENSMUST00000196647	-	1200	-	-	- (aa)	-	-
ENSMUST00000197777	-	353	-	ENSMUSP00000143572	92 (aa)	-	A0A0G2JGI0
ENSMUST00000065263	-	10071	XM_006530321	ENSMUSP00000066808	1391 (aa)	XP_006530384	B2RRI2
ENSMUST00000197723	-	1512	-	-	- (aa)	-	-
ENSMUST00000199004	-	5297	-	ENSMUSP00000143314	263 (aa)	-	A0A0G2JFU7
ENSMUST00000196842	-	1061	-	-	- (aa)	-	-
ENSMUST00000168651	-	4170	-	ENSMUSP00000130860	1390 (aa)	-	F7CVW0
ENSMUST00000200674	-	1224	-	ENSMUSP00000143440	242 (aa)	-	A0A0G2JG63
ENSMUST00000197974	-	2033	-	-	- (aa)	-	-
ENSMUST00000200474	-	2413	-	ENSMUSP00000143516	755 (aa)	-	A0A0G2JGC7
ENSMUST00000196329	-	2100	-	ENSMUSP00000143084	663 (aa)	-	Q3TMM7
ENSMUST00000197228	-	652	-	-	- (aa)	-	-
ENSMUST00000198285	-	599	-	-	- (aa)	-	-
ENSMUST00000198420	-	599	-	ENSMUSP00000142416	133 (aa)	-	A0A0G2JDL6
ENSMUST00000199245	-	973	-	-	- (aa)	-	-
ENSMUST00000199808	-	10161	XM_006530317	ENSMUSP00000142481	1391 (aa)	XP_006530380	B2RRI2

Gene Model

Click here to download ENSMUSG00000038095's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038095's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000038095	Sbno1	94	67.982	ENSMUSG00000035673	Sbno2	77	67.800

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038095	Sbno1	100	96.696	ENSG00000139697	SBNO1	99	97.557	Homo_sapiens
ENSMUSG00000038095	Sbno1	94	90.789	ENSAPOG00000003196	sbno1	98	80.809	Acanthochromis_polyacanthus
ENSMUSG00000038095	Sbno1	100	96.835	ENSAMEG00000015151	SBNO1	99	97.491	Ailuropoda_melanoleuca
ENSMUSG00000038095	Sbno1	94	90.789	ENSACIG00000008088	sbno1	99	74.332	Amphilophus_citrinellus
ENSMUSG00000038095	Sbno1	94	90.789	ENSAOCG00000014859	sbno1	99	75.018	Amphiprion_ocellaris
ENSMUSG00000038095	Sbno1	94	90.789	ENSAPEG00000006069	sbno1	99	75.018	Amphiprion_percula
ENSMUSG00000038095	Sbno1	94	89.912	ENSATEG00000006667	sbno1	99	75.806	Anabas_testudineus
ENSMUSG00000038095	Sbno1	94	97.368	ENSAPLG00000015674	SBNO1	99	91.739	Anas_platyrhynchos
ENSMUSG00000038095	Sbno1	94	96.053	ENSACAG00000015441	SBNO1	88	86.771	Anolis_carolinensis
ENSMUSG00000038095	Sbno1	100	97.134	ENSANAG00000029958	-	99	98.913	Aotus_nancymaae
ENSMUSG00000038095	Sbno1	94	90.351	ENSACLG00000024913	sbno1	99	74.839	Astatotilapia_calliptera
ENSMUSG00000038095	Sbno1	94	92.105	ENSAMXG00000019473	sbno1	99	80.342	Astyanax_mexicanus
ENSMUSG00000038095	Sbno1	100	98.494	ENSBTAG00000020505	SBNO1	99	97.701	Bos_taurus
ENSMUSG00000038095	Sbno1	100	97.134	ENSCJAG00000016599	SBNO1	99	97.342	Callithrix_jacchus
ENSMUSG00000038095	Sbno1	100	97.078	ENSCAFG00000007503	SBNO1	99	97.506	Canis_familiaris
ENSMUSG00000038095	Sbno1	99	98.638	ENSCAFG00020015363	SBNO1	99	96.739	Canis_lupus_dingo
ENSMUSG00000038095	Sbno1	99	98.336	ENSCHIG00000008382	SBNO1	99	97.556	Capra_hircus
ENSMUSG00000038095	Sbno1	100	98.190	ENSTSYG00000012749	SBNO1	99	97.773	Carlito_syrichta
ENSMUSG00000038095	Sbno1	96	97.444	ENSCAPG00000000384	SBNO1	99	98.217	Cavia_aperea
ENSMUSG00000038095	Sbno1	99	97.277	ENSCPOG00000008109	SBNO1	99	99.094	Cavia_porcellus
ENSMUSG00000038095	Sbno1	100	97.285	ENSCCAG00000035316	SBNO1	99	92.678	Cebus_capucinus
ENSMUSG00000038095	Sbno1	97	97.702	ENSCATG00000008239	SBNO1	98	99.457	Cercocebus_atys
ENSMUSG00000038095	Sbno1	99	97.428	ENSCLAG00000008995	SBNO1	99	99.457	Chinchilla_lanigera
ENSMUSG00000038095	Sbno1	94	99.561	ENSCSAG00000002064	SBNO1	99	98.531	Chlorocebus_sabaeus
ENSMUSG00000038095	Sbno1	94	99.561	ENSCHOG00000008814	SBNO1	96	94.033	Choloepus_hoffmanni
ENSMUSG00000038095	Sbno1	100	92.459	ENSCPBG00000025968	SBNO1	99	91.876	Chrysemys_picta_bellii
ENSMUSG00000038095	Sbno1	99	93.976	ENSCANG00000042688	-	99	91.966	Colobus_angolensis_palliatus
ENSMUSG00000038095	Sbno1	100	99.109	ENSCGRG00001017470	Sbno1	99	98.778	Cricetulus_griseus_chok1gshd
ENSMUSG00000038095	Sbno1	100	99.109	ENSCGRG00000004756	Sbno1	99	98.778	Cricetulus_griseus_crigri
ENSMUSG00000038095	Sbno1	94	90.351	ENSCSEG00000011919	sbno1	99	75.158	Cynoglossus_semilaevis
ENSMUSG00000038095	Sbno1	94	91.228	ENSCVAG00000007038	sbno1	99	75.806	Cyprinodon_variegatus
ENSMUSG00000038095	Sbno1	94	93.421	ENSDARG00000099080	sbno1	99	80.401	Danio_rerio
ENSMUSG00000038095	Sbno1	100	96.947	ENSDNOG00000017147	SBNO1	98	97.533	Dasypus_novemcinctus
ENSMUSG00000038095	Sbno1	99	84.218	ENSDORG00000015261	Sbno1	99	84.218	Dipodomys_ordii
ENSMUSG00000038095	Sbno1	94	99.561	ENSETEG00000005620	SBNO1	93	90.566	Echinops_telfairi
ENSMUSG00000038095	Sbno1	94	85.965	ENSEBUG00000013823	sbno1	93	62.326	Eptatretus_burgeri
ENSMUSG00000038095	Sbno1	100	98.795	ENSEASG00005012595	-	92	98.516	Equus_asinus_asinus
ENSMUSG00000038095	Sbno1	100	97.840	ENSECAG00000006127	SBNO1	99	98.147	Equus_caballus
ENSMUSG00000038095	Sbno1	83	98.352	ENSEEUG00000003793	SBNO1	83	98.352	Erinaceus_europaeus
ENSMUSG00000038095	Sbno1	94	90.789	ENSELUG00000002886	sbno1	99	77.887	Esox_lucius
ENSMUSG00000038095	Sbno1	100	97.918	ENSFCAG00000015331	SBNO1	100	97.918	Felis_catus
ENSMUSG00000038095	Sbno1	94	96.930	ENSFALG00000009273	SBNO1	99	91.810	Ficedula_albicollis
ENSMUSG00000038095	Sbno1	99	97.277	ENSFDAG00000014232	SBNO1	99	95.183	Fukomys_damarensis
ENSMUSG00000038095	Sbno1	94	90.789	ENSFHEG00000007360	sbno1	99	75.615	Fundulus_heteroclitus
ENSMUSG00000038095	Sbno1	94	90.789	ENSGMOG00000018229	sbno1	99	78.642	Gadus_morhua
ENSMUSG00000038095	Sbno1	94	97.368	ENSGALG00000003392	SBNO1	99	91.951	Gallus_gallus
ENSMUSG00000038095	Sbno1	94	91.228	ENSGAFG00000003960	sbno1	99	75.490	Gambusia_affinis
ENSMUSG00000038095	Sbno1	94	90.351	ENSGACG00000015633	sbno1	99	79.024	Gasterosteus_aculeatus
ENSMUSG00000038095	Sbno1	97	95.009	ENSGAGG00000001065	SBNO1	99	91.240	Gopherus_agassizii
ENSMUSG00000038095	Sbno1	100	97.134	ENSGGOG00000015000	SBNO1	99	97.484	Gorilla_gorilla
ENSMUSG00000038095	Sbno1	94	89.912	ENSHBUG00000011910	sbno1	99	69.214	Haplochromis_burtoni
ENSMUSG00000038095	Sbno1	99	96.839	ENSHGLG00000014165	-	99	99.094	Heterocephalus_glaber_female
ENSMUSG00000038095	Sbno1	94	89.474	ENSHCOG00000003246	sbno1	95	84.783	Hippocampus_comes
ENSMUSG00000038095	Sbno1	94	90.789	ENSIPUG00000015830	Sbno1	98	78.887	Ictalurus_punctatus
ENSMUSG00000038095	Sbno1	100	98.190	ENSSTOG00000023221	SBNO1	99	99.275	Ictidomys_tridecemlineatus
ENSMUSG00000038095	Sbno1	99	98.341	ENSJJAG00000001741	Sbno1	99	97.629	Jaculus_jaculus
ENSMUSG00000038095	Sbno1	94	91.228	ENSKMAG00000009696	sbno1	99	75.369	Kryptolebias_marmoratus
ENSMUSG00000038095	Sbno1	94	91.228	ENSLBEG00000007623	sbno1	99	76.582	Labrus_bergylta
ENSMUSG00000038095	Sbno1	94	95.595	ENSLACG00000017227	SBNO1	99	83.468	Latimeria_chalumnae
ENSMUSG00000038095	Sbno1	94	92.544	ENSLOCG00000005725	sbno1	97	81.993	Lepisosteus_oculatus
ENSMUSG00000038095	Sbno1	100	96.061	ENSLAFG00000002135	SBNO1	99	96.911	Loxodonta_africana
ENSMUSG00000038095	Sbno1	100	97.134	ENSMFAG00000031429	SBNO1	99	97.486	Macaca_fascicularis
ENSMUSG00000038095	Sbno1	100	97.134	ENSMMUG00000011496	SBNO1	99	97.486	Macaca_mulatta
ENSMUSG00000038095	Sbno1	99	95.833	ENSMLEG00000033260	SBNO1	99	99.457	Mandrillus_leucophaeus
ENSMUSG00000038095	Sbno1	94	90.789	ENSMAMG00000005473	sbno1	99	75.811	Mastacembelus_armatus
ENSMUSG00000038095	Sbno1	94	97.368	ENSMGAG00000003274	SBNO1	99	91.876	Meleagris_gallopavo
ENSMUSG00000038095	Sbno1	100	99.548	ENSMAUG00000004834	-	100	99.548	Mesocricetus_auratus
ENSMUSG00000038095	Sbno1	100	98.190	ENSMICG00000006573	-	99	97.358	Microcebus_murinus
ENSMUSG00000038095	Sbno1	99	99.394	ENSMOCG00000009390	Sbno1	99	95.259	Microtus_ochrogaster
ENSMUSG00000038095	Sbno1	94	90.749	ENSMMOG00000008691	sbno1	99	71.661	Mola_mola
ENSMUSG00000038095	Sbno1	100	93.898	ENSMODG00000012470	SBNO1	99	94.042	Monodelphis_domestica
ENSMUSG00000038095	Sbno1	94	90.789	ENSMALG00000001056	sbno1	99	75.420	Monopterus_albus
ENSMUSG00000038095	Sbno1	100	99.548	MGP_CAROLIEiJ_G0027749	Sbno1	100	99.548	Mus_caroli
ENSMUSG00000038095	Sbno1	100	99.548	MGP_PahariEiJ_G0024329	Sbno1	100	99.548	Mus_pahari
ENSMUSG00000038095	Sbno1	100	100.000	MGP_SPRETEiJ_G0028747	Sbno1	100	100.000	Mus_spretus
ENSMUSG00000038095	Sbno1	100	97.586	ENSMPUG00000001658	SBNO1	99	97.989	Mustela_putorius_furo
ENSMUSG00000038095	Sbno1	100	96.950	ENSMLUG00000017159	SBNO1	99	97.342	Myotis_lucifugus
ENSMUSG00000038095	Sbno1	99	99.092	ENSNGAG00000012620	Sbno1	98	99.211	Nannospalax_galili
ENSMUSG00000038095	Sbno1	94	90.351	ENSNBRG00000019189	sbno1	99	74.499	Neolamprologus_brichardi
ENSMUSG00000038095	Sbno1	100	97.436	ENSNLEG00000001502	SBNO1	99	93.602	Nomascus_leucogenys
ENSMUSG00000038095	Sbno1	94	97.797	ENSMEUG00000008768	-	93	85.443	Notamacropus_eugenii
ENSMUSG00000038095	Sbno1	99	93.611	ENSOPRG00000011054	SBNO1	99	93.539	Ochotona_princeps
ENSMUSG00000038095	Sbno1	99	97.428	ENSODEG00000009997	SBNO1	99	99.094	Octodon_degus
ENSMUSG00000038095	Sbno1	94	90.351	ENSONIG00000015348	sbno1	99	75.882	Oreochromis_niloticus
ENSMUSG00000038095	Sbno1	100	96.061	ENSOCUG00000002441	SBNO1	95	95.912	Oryctolagus_cuniculus
ENSMUSG00000038095	Sbno1	94	91.228	ENSORLG00000001593	sbno1	99	75.309	Oryzias_latipes
ENSMUSG00000038095	Sbno1	94	91.228	ENSORLG00020015216	sbno1	99	75.387	Oryzias_latipes_hni
ENSMUSG00000038095	Sbno1	94	91.228	ENSORLG00015002726	sbno1	99	75.316	Oryzias_latipes_hsok
ENSMUSG00000038095	Sbno1	94	91.228	ENSOMEG00000019313	sbno1	99	74.702	Oryzias_melastigma
ENSMUSG00000038095	Sbno1	100	93.825	ENSOGAG00000010781	-	100	94.428	Otolemur_garnettii
ENSMUSG00000038095	Sbno1	100	96.831	ENSOARG00000004404	SBNO1	99	97.344	Ovis_aries
ENSMUSG00000038095	Sbno1	100	97.285	ENSPPAG00000024635	SBNO1	99	97.557	Pan_paniscus
ENSMUSG00000038095	Sbno1	100	97.918	ENSPPRG00000022092	SBNO1	100	97.918	Panthera_pardus
ENSMUSG00000038095	Sbno1	100	96.947	ENSPTIG00000017803	SBNO1	99	97.628	Panthera_tigris_altaica
ENSMUSG00000038095	Sbno1	100	97.285	ENSPTRG00000005597	SBNO1	99	97.629	Pan_troglodytes
ENSMUSG00000038095	Sbno1	100	97.134	ENSPANG00000011640	SBNO1	99	99.457	Papio_anubis
ENSMUSG00000038095	Sbno1	94	91.667	ENSPKIG00000001441	sbno1	99	80.243	Paramormyrops_kingsleyae
ENSMUSG00000038095	Sbno1	100	92.308	ENSPSIG00000009572	-	99	91.332	Pelodiscus_sinensis
ENSMUSG00000038095	Sbno1	99	86.845	ENSPSIG00000009256	-	100	87.626	Pelodiscus_sinensis
ENSMUSG00000038095	Sbno1	93	84.375	ENSPMGG00000017196	sbno1	93	82.222	Periophthalmus_magnuspinnatus
ENSMUSG00000038095	Sbno1	100	98.346	ENSPEMG00000016087	Sbno1	99	98.732	Peromyscus_maniculatus_bairdii
ENSMUSG00000038095	Sbno1	89	86.512	ENSPMAG00000007246	-	100	61.203	Petromyzon_marinus
ENSMUSG00000038095	Sbno1	100	94.436	ENSPCIG00000010985	SBNO1	100	93.687	Phascolarctos_cinereus
ENSMUSG00000038095	Sbno1	94	91.667	ENSPFOG00000005069	sbno1	99	75.806	Poecilia_formosa
ENSMUSG00000038095	Sbno1	94	91.667	ENSPLAG00000015015	sbno1	99	75.666	Poecilia_latipinna
ENSMUSG00000038095	Sbno1	94	91.667	ENSPMEG00000021212	sbno1	99	75.806	Poecilia_mexicana
ENSMUSG00000038095	Sbno1	94	91.228	ENSPREG00000017746	sbno1	99	75.456	Poecilia_reticulata
ENSMUSG00000038095	Sbno1	99	97.196	ENSPPYG00000005084	SBNO1	99	97.196	Pongo_abelii
ENSMUSG00000038095	Sbno1	94	99.561	ENSPCAG00000008634	SBNO1	88	92.149	Procavia_capensis
ENSMUSG00000038095	Sbno1	100	98.039	ENSPCOG00000024277	SBNO1	99	99.271	Propithecus_coquereli
ENSMUSG00000038095	Sbno1	94	99.123	ENSPVAG00000015304	SBNO1	87	99.006	Pteropus_vampyrus
ENSMUSG00000038095	Sbno1	94	90.351	ENSPNYG00000004291	sbno1	99	76.059	Pundamilia_nyererei
ENSMUSG00000038095	Sbno1	94	92.105	ENSPNAG00000015622	sbno1	99	79.359	Pygocentrus_nattereri
ENSMUSG00000038095	Sbno1	100	99.066	ENSRNOG00000001064	Sbno1	100	99.066	Rattus_norvegicus
ENSMUSG00000038095	Sbno1	100	97.285	ENSRROG00000034230	SBNO1	99	99.457	Rhinopithecus_roxellana
ENSMUSG00000038095	Sbno1	94	99.561	ENSSBOG00000015422	SBNO1	99	92.107	Saimiri_boliviensis_boliviensis
ENSMUSG00000038095	Sbno1	94	92.544	ENSSFOG00015019025	sbno1	99	80.129	Scleropages_formosus
ENSMUSG00000038095	Sbno1	94	91.228	ENSSMAG00000013640	sbno1	99	76.147	Scophthalmus_maximus
ENSMUSG00000038095	Sbno1	94	91.228	ENSSDUG00000023480	sbno1	99	76.321	Seriola_dumerili
ENSMUSG00000038095	Sbno1	94	91.228	ENSSLDG00000007928	sbno1	99	76.251	Seriola_lalandi_dorsalis
ENSMUSG00000038095	Sbno1	94	99.561	ENSSARG00000002594	SBNO1	89	97.731	Sorex_araneus
ENSMUSG00000038095	Sbno1	100	91.704	ENSSPUG00000012640	SBNO1	99	88.641	Sphenodon_punctatus
ENSMUSG00000038095	Sbno1	94	90.351	ENSSPAG00000016244	sbno1	99	75.140	Stegastes_partitus
ENSMUSG00000038095	Sbno1	100	98.494	ENSSSCG00000009776	SBNO1	99	97.989	Sus_scrofa
ENSMUSG00000038095	Sbno1	94	96.930	ENSTGUG00000005380	SBNO1	99	91.667	Taeniopygia_guttata
ENSMUSG00000038095	Sbno1	94	90.789	ENSTRUG00000018490	sbno1	100	75.404	Takifugu_rubripes
ENSMUSG00000038095	Sbno1	94	90.789	ENSTNIG00000013506	sbno1	99	71.252	Tetraodon_nigroviridis
ENSMUSG00000038095	Sbno1	100	97.459	ENSUAMG00000019671	SBNO1	99	97.845	Ursus_americanus
ENSMUSG00000038095	Sbno1	100	97.459	ENSUMAG00000004002	SBNO1	99	97.845	Ursus_maritimus
ENSMUSG00000038095	Sbno1	100	92.503	ENSVPAG00000007024	SBNO1	95	93.333	Vicugna_pacos
ENSMUSG00000038095	Sbno1	100	97.078	ENSVVUG00000027807	SBNO1	99	97.629	Vulpes_vulpes
ENSMUSG00000038095	Sbno1	94	95.175	ENSXETG00000031930	SBNO1	100	82.286	Xenopus_tropicalis
ENSMUSG00000038095	Sbno1	94	91.667	ENSXCOG00000011607	sbno1	96	74.247	Xiphophorus_couchianus
ENSMUSG00000038095	Sbno1	94	91.667	ENSXMAG00000002140	sbno1	99	75.717	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0008150	biological_process	-	ND	Process