EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038279 (Gene tree)
Gene ID: 110109
Gene Symbol: Nop2
Alias: 120kDa|Nol1
Full Name: NOP2 nucleolar protein
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 12845 bases
Position: chr6:125131909-125144753
Accession: 107891
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000047123	Methyltr_RsmB-F	PF01189.17	1.8e-83	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000044200	-	2597	XM_017321322	ENSMUSP00000047123	794 (aa)	XP_017176811	E9QN31
ENSMUST00000204185	-	579	-	ENSMUSP00000145333	133 (aa)	-	A0A0N4SW16

Gene Model

Click here to download ENSMUSG00000038279's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038279's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038279	Nop2	69	66.129	ENSAPOG00000023186	nop2	96	55.966	Acanthochromis_polyacanthus
ENSMUSG00000038279	Nop2	99	72.651	ENSAMEG00000014268	-	99	72.651	Ailuropoda_melanoleuca
ENSMUSG00000038279	Nop2	50	74.121	ENSACIG00000011803	nop2	88	58.447	Amphilophus_citrinellus
ENSMUSG00000038279	Nop2	55	68.502	ENSAPEG00000011152	nop2	84	62.276	Amphiprion_percula
ENSMUSG00000038279	Nop2	73	67.496	ENSACAG00000006397	-	97	61.351	Anolis_carolinensis
ENSMUSG00000038279	Nop2	86	57.003	ENSAMXG00000018985	nop2	89	58.087	Astyanax_mexicanus
ENSMUSG00000038279	Nop2	100	73.780	ENSBTAG00000014733	NOP2	99	73.780	Bos_taurus
ENSMUSG00000038279	Nop2	100	70.567	ENSCAFG00000015034	NOP2	100	71.049	Canis_familiaris
ENSMUSG00000038279	Nop2	100	71.255	ENSCAFG00020002884	-	100	71.742	Canis_lupus_dingo
ENSMUSG00000038279	Nop2	100	74.015	ENSCHIG00000018560	-	99	74.138	Capra_hircus
ENSMUSG00000038279	Nop2	99	68.198	ENSTSYG00000006030	-	100	68.080	Carlito_syrichta
ENSMUSG00000038279	Nop2	93	65.182	ENSCAPG00000011953	-	98	65.317	Cavia_aperea
ENSMUSG00000038279	Nop2	100	73.383	ENSCPOG00000020690	-	100	73.507	Cavia_porcellus
ENSMUSG00000038279	Nop2	98	74.717	ENSCLAG00000014440	-	99	74.843	Chinchilla_lanigera
ENSMUSG00000038279	Nop2	100	73.697	ENSCSAG00000010484	-	100	73.576	Chlorocebus_sabaeus
ENSMUSG00000038279	Nop2	50	85.278	ENSCPBG00000027725	-	72	85.278	Chrysemys_picta_bellii
ENSMUSG00000038279	Nop2	55	63.699	ENSCING00000008548	-	77	60.714	Ciona_intestinalis
ENSMUSG00000038279	Nop2	100	74.115	ENSCANG00000038803	-	94	84.148	Colobus_angolensis_palliatus
ENSMUSG00000038279	Nop2	99	83.396	ENSCGRG00001020970	Nop2	100	83.396	Cricetulus_griseus_chok1gshd
ENSMUSG00000038279	Nop2	99	83.396	ENSCGRG00000015782	Nop2	100	83.396	Cricetulus_griseus_crigri
ENSMUSG00000038279	Nop2	54	62.585	ENSCSEG00000020126	nop2	84	50.681	Cynoglossus_semilaevis
ENSMUSG00000038279	Nop2	73	64.478	ENSDARG00000043304	nop2	80	64.358	Danio_rerio
ENSMUSG00000038279	Nop2	100	70.446	ENSDNOG00000001133	-	100	70.567	Dasypus_novemcinctus
ENSMUSG00000038279	Nop2	75	73.529	ENSETEG00000005909	-	73	76.303	Echinops_telfairi
ENSMUSG00000038279	Nop2	100	75.336	ENSEASG00005016153	-	100	74.969	Equus_asinus_asinus
ENSMUSG00000038279	Nop2	100	74.756	ENSECAG00000012639	NOP2	99	74.390	Equus_caballus
ENSMUSG00000038279	Nop2	79	67.762	ENSEEUG00000011692	-	91	67.762	Erinaceus_europaeus
ENSMUSG00000038279	Nop2	53	71.734	ENSELUG00000017384	nop2	86	59.418	Esox_lucius
ENSMUSG00000038279	Nop2	99	70.545	ENSFCAG00000006876	-	99	70.909	Felis_catus
ENSMUSG00000038279	Nop2	63	69.380	ENSFALG00000004797	-	81	69.482	Ficedula_albicollis
ENSMUSG00000038279	Nop2	57	69.499	ENSGMOG00000011005	nop2	100	70.435	Gadus_morhua
ENSMUSG00000038279	Nop2	57	74.393	ENSGALG00000037807	-	83	73.523	Gallus_gallus
ENSMUSG00000038279	Nop2	56	70.732	ENSGACG00000010317	nop2	100	69.848	Gasterosteus_aculeatus
ENSMUSG00000038279	Nop2	73	66.124	ENSGAGG00000001438	-	95	62.519	Gopherus_agassizii
ENSMUSG00000038279	Nop2	100	75.706	ENSGGOG00000001926	NOP2	94	83.474	Gorilla_gorilla
ENSMUSG00000038279	Nop2	51	62.802	ENSHBUG00000014908	nop2	87	49.926	Haplochromis_burtoni
ENSMUSG00000038279	Nop2	73	61.951	ENSHCOG00000017852	nop2	62	70.362	Hippocampus_comes
ENSMUSG00000038279	Nop2	73	63.696	ENSIPUG00000008198	nop2	91	60.245	Ictalurus_punctatus
ENSMUSG00000038279	Nop2	62	65.743	ENSLBEG00000007281	nop2	67	65.558	Labrus_bergylta
ENSMUSG00000038279	Nop2	68	60.141	ENSLOCG00000007050	nop2	100	60.784	Lepisosteus_oculatus
ENSMUSG00000038279	Nop2	100	74.229	ENSLAFG00000002784	-	100	74.476	Loxodonta_africana
ENSMUSG00000038279	Nop2	53	71.132	ENSMAMG00000001909	nop2	68	65.631	Mastacembelus_armatus
ENSMUSG00000038279	Nop2	57	68.151	ENSMZEG00005017552	nop2	88	58.473	Maylandia_zebra
ENSMUSG00000038279	Nop2	57	74.725	ENSMGAG00000014082	-	98	73.810	Meleagris_gallopavo
ENSMUSG00000038279	Nop2	100	69.632	ENSMICG00000006570	-	100	70.107	Microcebus_murinus
ENSMUSG00000038279	Nop2	100	82.228	ENSMOCG00000017237	Nop2	100	82.228	Microtus_ochrogaster
ENSMUSG00000038279	Nop2	78	73.030	ENSMODG00000018077	-	89	72.424	Monodelphis_domestica
ENSMUSG00000038279	Nop2	100	71.583	ENSMPUG00000016865	-	100	71.343	Mustela_putorius_furo
ENSMUSG00000038279	Nop2	100	68.591	ENSMLUG00000014333	-	100	68.707	Myotis_lucifugus
ENSMUSG00000038279	Nop2	99	79.172	ENSNGAG00000019010	Nop2	98	79.172	Nannospalax_galili
ENSMUSG00000038279	Nop2	56	61.075	ENSNBRG00000001113	nop2	69	58.144	Neolamprologus_brichardi
ENSMUSG00000038279	Nop2	100	75.214	ENSNLEG00000004242	-	94	84.992	Nomascus_leucogenys
ENSMUSG00000038279	Nop2	82	71.151	ENSMEUG00000015287	-	96	71.148	Notamacropus_eugenii
ENSMUSG00000038279	Nop2	83	97.143	ENSOPRG00000003412	-	79	97.143	Ochotona_princeps
ENSMUSG00000038279	Nop2	56	68.820	ENSONIG00000012896	nop2	87	58.923	Oreochromis_niloticus
ENSMUSG00000038279	Nop2	100	70.545	ENSOCUG00000008203	-	100	70.667	Oryctolagus_cuniculus
ENSMUSG00000038279	Nop2	73	62.704	ENSORLG00020005484	nop2	88	58.771	Oryzias_latipes_hni
ENSMUSG00000038279	Nop2	54	67.391	ENSOMEG00000012751	nop2	77	55.196	Oryzias_melastigma
ENSMUSG00000038279	Nop2	100	72.934	ENSOARG00000007641	-	100	73.054	Ovis_aries
ENSMUSG00000038279	Nop2	99	70.833	ENSPPRG00000012300	-	99	70.833	Panthera_pardus
ENSMUSG00000038279	Nop2	99	70.000	ENSPTIG00000020543	-	99	70.476	Panthera_tigris_altaica
ENSMUSG00000038279	Nop2	100	74.847	ENSPANG00000024426	-	95	84.615	Papio_anubis
ENSMUSG00000038279	Nop2	73	68.562	ENSPSIG00000016127	-	99	68.500	Pelodiscus_sinensis
ENSMUSG00000038279	Nop2	100	82.733	ENSPEMG00000013138	Nop2	99	82.836	Peromyscus_maniculatus_bairdii
ENSMUSG00000038279	Nop2	73	73.877	ENSPCIG00000001788	-	78	73.211	Phascolarctos_cinereus
ENSMUSG00000038279	Nop2	55	71.818	ENSPFOG00000013054	nop2	63	69.264	Poecilia_formosa
ENSMUSG00000038279	Nop2	58	69.149	ENSPMEG00000016775	nop2	69	69.295	Poecilia_mexicana
ENSMUSG00000038279	Nop2	55	75.510	ENSPREG00000010428	nop2	64	75.510	Poecilia_reticulata
ENSMUSG00000038279	Nop2	100	74.268	ENSPPYG00000004191	-	100	74.878	Pongo_abelii
ENSMUSG00000038279	Nop2	96	71.142	ENSPCAG00000007033	-	88	73.001	Procavia_capensis
ENSMUSG00000038279	Nop2	64	96.465	ENSPVAG00000012572	-	62	96.465	Pteropus_vampyrus
ENSMUSG00000038279	Nop2	56	61.905	ENSPNYG00000023163	nop2	74	73.529	Pundamilia_nyererei
ENSMUSG00000038279	Nop2	79	60.583	ENSPNAG00000019880	nop2	84	60.494	Pygocentrus_nattereri
ENSMUSG00000038279	Nop2	100	86.146	ENSRNOG00000018453	Nop2	100	86.146	Rattus_norvegicus
ENSMUSG00000038279	Nop2	100	74.601	ENSRROG00000041019	-	94	84.486	Rhinopithecus_roxellana
ENSMUSG00000038279	Nop2	100	74.115	ENSSBOG00000034622	-	100	74.481	Saimiri_boliviensis_boliviensis
ENSMUSG00000038279	Nop2	67	84.439	ENSSHAG00000015028	-	99	71.429	Sarcophilus_harrisii
ENSMUSG00000038279	Nop2	61	65.031	ENSSFOG00015002458	nop2	83	61.353	Scleropages_formosus
ENSMUSG00000038279	Nop2	58	69.510	ENSSMAG00000011738	nop2	69	68.750	Scophthalmus_maximus
ENSMUSG00000038279	Nop2	69	62.679	ENSSARG00000004520	-	75	62.679	Sorex_araneus
ENSMUSG00000038279	Nop2	74	62.993	ENSSPUG00000015240	-	86	63.696	Sphenodon_punctatus
ENSMUSG00000038279	Nop2	66	69.231	ENSSPAG00000005491	nop2	75	70.833	Stegastes_partitus
ENSMUSG00000038279	Nop2	99	74.146	ENSSSCG00000000696	-	99	74.743	Sus_scrofa
ENSMUSG00000038279	Nop2	74	64.833	ENSTGUG00000013336	-	100	64.426	Taeniopygia_guttata
ENSMUSG00000038279	Nop2	60	59.100	ENSTRUG00000002011	nop2	85	51.692	Takifugu_rubripes
ENSMUSG00000038279	Nop2	73	60.544	ENSTNIG00000008046	nop2	88	60.374	Tetraodon_nigroviridis
ENSMUSG00000038279	Nop2	58	80.952	ENSTBEG00000010989	-	57	80.952	Tupaia_belangeri
ENSMUSG00000038279	Nop2	96	66.751	ENSTTRG00000016100	-	91	66.751	Tursiops_truncatus
ENSMUSG00000038279	Nop2	100	72.121	ENSUAMG00000016105	-	100	72.121	Ursus_americanus
ENSMUSG00000038279	Nop2	100	72.573	ENSUMAG00000007220	-	100	72.573	Ursus_maritimus
ENSMUSG00000038279	Nop2	100	72.084	ENSVVUG00000011466	-	100	72.208	Vulpes_vulpes
ENSMUSG00000038279	Nop2	73	61.333	ENSXETG00000011515	nop2	100	60.465	Xenopus_tropicalis
ENSMUSG00000038279	Nop2	63	65.820	ENSXMAG00000011483	nop2	68	66.859	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000027	ribosomal large subunit assembly	-	ISO	Process
GO:0001825	blastocyst formation	27869233.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0008284	positive regulation of cell proliferation	-	ISO	Process
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	-	IEA	Function
GO:0009383	rRNA (cytosine-C5-)-methyltransferase activity	21873635.	IBA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0032259	methylation	-	IEA	Process
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0070475	rRNA base methylation	21873635.	IBA	Process
GO:1901796	regulation of signal transduction by p53 class mediator	-	ISO	Process