EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038335 (Gene tree)
Gene ID: 104662
Gene Symbol: Tsr1
Alias: -
Full Name: TSR1 20S rRNA accumulation
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 11272 bases
Position: chr11:74898071-74909342
Accession: 2144566
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000039027	AARP2CN	PF08142.12	3.6e-20	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000144019	-	540	-	-	- (aa)	-	-
ENSMUST00000045807	-	3389	-	ENSMUSP00000039027	803 (aa)	-	Q5SWD9
ENSMUST00000128230	-	2336	-	ENSMUSP00000121384	90 (aa)	-	D6RCZ2
ENSMUST00000155702	-	1549	-	ENSMUSP00000119868	65 (aa)	-	D6RI76
ENSMUST00000155785	-	1369	-	-	- (aa)	-	-
ENSMUST00000130910	-	769	-	-	- (aa)	-	-
ENSMUST00000153316	-	708	-	ENSMUSP00000114183	40 (aa)	-	F6ZVN6

Gene Model

Click here to download ENSMUSG00000038335's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038335's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038335	Tsr1	100	85.590	ENSG00000167721	TSR1	100	85.714	Homo_sapiens
ENSMUSG00000038335	Tsr1	99	54.436	ENSAPOG00000020891	tsr1	99	55.995	Acanthochromis_polyacanthus
ENSMUSG00000038335	Tsr1	100	85.381	ENSAMEG00000007599	TSR1	99	85.381	Ailuropoda_melanoleuca
ENSMUSG00000038335	Tsr1	99	56.296	ENSACIG00000007090	tsr1	99	56.250	Amphilophus_citrinellus
ENSMUSG00000038335	Tsr1	99	54.217	ENSAOCG00000023284	tsr1	99	55.381	Amphiprion_ocellaris
ENSMUSG00000038335	Tsr1	94	54.987	ENSAPEG00000008452	tsr1	100	56.522	Amphiprion_percula
ENSMUSG00000038335	Tsr1	99	54.382	ENSATEG00000021961	tsr1	99	55.222	Anabas_testudineus
ENSMUSG00000038335	Tsr1	92	69.583	ENSAPLG00000013422	TSR1	100	69.448	Anas_platyrhynchos
ENSMUSG00000038335	Tsr1	70	57.639	ENSACAG00000000859	TSR1	92	58.579	Anolis_carolinensis
ENSMUSG00000038335	Tsr1	100	86.800	ENSANAG00000031071	TSR1	100	86.800	Aotus_nancymaae
ENSMUSG00000038335	Tsr1	99	55.210	ENSACLG00000007595	tsr1	99	55.381	Astatotilapia_calliptera
ENSMUSG00000038335	Tsr1	50	49.275	ENSAMXG00000008470	tsr1	95	47.577	Astyanax_mexicanus
ENSMUSG00000038335	Tsr1	100	87.811	ENSBTAG00000004225	TSR1	100	88.308	Bos_taurus
ENSMUSG00000038335	Tsr1	97	39.196	WBGene00006497	tag-151	96	39.773	Caenorhabditis_elegans
ENSMUSG00000038335	Tsr1	100	86.052	ENSCJAG00000012456	TSR1	100	86.052	Callithrix_jacchus
ENSMUSG00000038335	Tsr1	90	84.435	ENSCAFG00000019273	-	100	86.758	Canis_familiaris
ENSMUSG00000038335	Tsr1	100	85.093	ENSCAFG00000002106	-	100	85.466	Canis_familiaris
ENSMUSG00000038335	Tsr1	100	84.988	ENSCAFG00020009728	TSR1	100	85.360	Canis_lupus_dingo
ENSMUSG00000038335	Tsr1	100	87.935	ENSCHIG00000023935	TSR1	100	88.433	Capra_hircus
ENSMUSG00000038335	Tsr1	100	86.177	ENSTSYG00000005468	TSR1	100	86.177	Carlito_syrichta
ENSMUSG00000038335	Tsr1	93	85.523	ENSCPOG00000014833	TSR1	99	85.791	Cavia_porcellus
ENSMUSG00000038335	Tsr1	93	86.577	ENSCCAG00000028962	TSR1	98	86.577	Cebus_capucinus
ENSMUSG00000038335	Tsr1	100	86.087	ENSCATG00000044262	TSR1	100	86.087	Cercocebus_atys
ENSMUSG00000038335	Tsr1	100	86.177	ENSCLAG00000005567	TSR1	100	86.177	Chinchilla_lanigera
ENSMUSG00000038335	Tsr1	100	86.211	ENSCSAG00000013788	TSR1	100	86.211	Chlorocebus_sabaeus
ENSMUSG00000038335	Tsr1	99	69.164	ENSCPBG00000020363	TSR1	97	69.554	Chrysemys_picta_bellii
ENSMUSG00000038335	Tsr1	97	45.455	ENSCING00000020658	-	99	45.455	Ciona_intestinalis
ENSMUSG00000038335	Tsr1	97	44.598	ENSCSAVG00000001875	-	100	44.320	Ciona_savignyi
ENSMUSG00000038335	Tsr1	100	76.361	ENSCANG00000033056	TSR1	100	78.705	Colobus_angolensis_palliatus
ENSMUSG00000038335	Tsr1	100	92.537	ENSCGRG00001023942	Tsr1	100	92.289	Cricetulus_griseus_chok1gshd
ENSMUSG00000038335	Tsr1	100	84.558	ENSCGRG00000013015	Tsr1	100	86.426	Cricetulus_griseus_crigri
ENSMUSG00000038335	Tsr1	99	53.855	ENSCSEG00000013009	tsr1	99	54.414	Cynoglossus_semilaevis
ENSMUSG00000038335	Tsr1	99	55.260	ENSCVAG00000000506	tsr1	99	56.068	Cyprinodon_variegatus
ENSMUSG00000038335	Tsr1	99	54.268	ENSDARG00000007744	tsr1	99	55.122	Danio_rerio
ENSMUSG00000038335	Tsr1	100	84.558	ENSDNOG00000004715	TSR1	100	86.197	Dasypus_novemcinctus
ENSMUSG00000038335	Tsr1	97	75.064	ENSDORG00000023234	-	100	75.064	Dipodomys_ordii
ENSMUSG00000038335	Tsr1	100	86.070	ENSDORG00000016371	-	100	86.070	Dipodomys_ordii
ENSMUSG00000038335	Tsr1	97	43.176	FBgn0037073	Tsr1	96	43.797	Drosophila_melanogaster
ENSMUSG00000038335	Tsr1	92	88.525	ENSETEG00000017534	TSR1	92	88.525	Echinops_telfairi
ENSMUSG00000038335	Tsr1	96	52.510	ENSEBUG00000013731	TSR1	98	52.510	Eptatretus_burgeri
ENSMUSG00000038335	Tsr1	100	86.443	ENSEASG00005009302	TSR1	97	86.940	Equus_asinus_asinus
ENSMUSG00000038335	Tsr1	100	86.318	ENSECAG00000009114	TSR1	100	86.692	Equus_caballus
ENSMUSG00000038335	Tsr1	99	54.077	ENSELUG00000020984	tsr1	95	54.293	Esox_lucius
ENSMUSG00000038335	Tsr1	100	85.572	ENSFCAG00000006313	TSR1	100	85.697	Felis_catus
ENSMUSG00000038335	Tsr1	99	69.012	ENSFALG00000006532	TSR1	99	70.000	Ficedula_albicollis
ENSMUSG00000038335	Tsr1	100	85.928	ENSFDAG00000006038	TSR1	100	85.679	Fukomys_damarensis
ENSMUSG00000038335	Tsr1	99	53.892	ENSFHEG00000003626	tsr1	99	55.210	Fundulus_heteroclitus
ENSMUSG00000038335	Tsr1	99	53.171	ENSGMOG00000010336	tsr1	99	54.258	Gadus_morhua
ENSMUSG00000038335	Tsr1	99	53.976	ENSGAFG00000012993	tsr1	99	54.293	Gambusia_affinis
ENSMUSG00000038335	Tsr1	99	53.742	ENSGACG00000010843	tsr1	99	54.579	Gasterosteus_aculeatus
ENSMUSG00000038335	Tsr1	99	69.511	ENSGAGG00000025619	-	99	68.781	Gopherus_agassizii
ENSMUSG00000038335	Tsr1	100	85.963	ENSGGOG00000001704	TSR1	100	86.087	Gorilla_gorilla
ENSMUSG00000038335	Tsr1	99	55.210	ENSHBUG00000017904	tsr1	100	56.138	Haplochromis_burtoni
ENSMUSG00000038335	Tsr1	100	86.443	ENSHGLG00000012806	-	100	86.318	Heterocephalus_glaber_female
ENSMUSG00000038335	Tsr1	97	76.963	ENSHGLG00000015688	-	99	76.963	Heterocephalus_glaber_female
ENSMUSG00000038335	Tsr1	100	86.443	ENSHGLG00100015392	TSR1	100	86.318	Heterocephalus_glaber_male
ENSMUSG00000038335	Tsr1	99	56.753	ENSHCOG00000001432	tsr1	99	56.506	Hippocampus_comes
ENSMUSG00000038335	Tsr1	99	54.578	ENSIPUG00000004618	tsr1	99	55.957	Ictalurus_punctatus
ENSMUSG00000038335	Tsr1	100	85.732	ENSSTOG00000011819	TSR1	100	86.352	Ictidomys_tridecemlineatus
ENSMUSG00000038335	Tsr1	92	82.225	ENSJJAG00000019505	Tsr1	95	82.225	Jaculus_jaculus
ENSMUSG00000038335	Tsr1	99	53.920	ENSKMAG00000005763	tsr1	99	53.753	Kryptolebias_marmoratus
ENSMUSG00000038335	Tsr1	99	54.077	ENSLBEG00000021823	tsr1	99	54.753	Labrus_bergylta
ENSMUSG00000038335	Tsr1	99	64.251	ENSLACG00000002197	TSR1	99	64.251	Latimeria_chalumnae
ENSMUSG00000038335	Tsr1	90	57.675	ENSLOCG00000006491	TSR1	97	58.420	Lepisosteus_oculatus
ENSMUSG00000038335	Tsr1	100	86.335	ENSMFAG00000021330	TSR1	100	86.335	Macaca_fascicularis
ENSMUSG00000038335	Tsr1	100	85.963	ENSMMUG00000017519	TSR1	100	85.963	Macaca_mulatta
ENSMUSG00000038335	Tsr1	100	85.963	ENSMNEG00000031382	TSR1	100	85.963	Macaca_nemestrina
ENSMUSG00000038335	Tsr1	100	85.963	ENSMLEG00000036733	TSR1	100	85.963	Mandrillus_leucophaeus
ENSMUSG00000038335	Tsr1	99	54.535	ENSMAMG00000017918	tsr1	99	54.970	Mastacembelus_armatus
ENSMUSG00000038335	Tsr1	99	55.144	ENSMZEG00005007477	tsr1	99	55.314	Maylandia_zebra
ENSMUSG00000038335	Tsr1	99	67.778	ENSMGAG00000005576	TSR1	99	68.765	Meleagris_gallopavo
ENSMUSG00000038335	Tsr1	100	87.313	ENSMICG00000012943	TSR1	100	87.438	Microcebus_murinus
ENSMUSG00000038335	Tsr1	100	90.423	ENSMOCG00000022764	Tsr1	100	91.045	Microtus_ochrogaster
ENSMUSG00000038335	Tsr1	99	54.435	ENSMMOG00000014280	tsr1	99	55.122	Mola_mola
ENSMUSG00000038335	Tsr1	100	77.612	ENSMODG00000010658	TSR1	100	77.612	Monodelphis_domestica
ENSMUSG00000038335	Tsr1	99	54.382	ENSMALG00000011681	tsr1	99	55.422	Monopterus_albus
ENSMUSG00000038335	Tsr1	100	97.883	MGP_CAROLIEiJ_G0016727	Tsr1	100	97.883	Mus_caroli
ENSMUSG00000038335	Tsr1	100	97.758	MGP_PahariEiJ_G0017864	Tsr1	100	97.758	Mus_pahari
ENSMUSG00000038335	Tsr1	100	99.377	MGP_SPRETEiJ_G0017570	Tsr1	100	99.377	Mus_spretus
ENSMUSG00000038335	Tsr1	82	86.128	ENSMPUG00000013000	TSR1	100	86.585	Mustela_putorius_furo
ENSMUSG00000038335	Tsr1	100	87.065	ENSMLUG00000003505	TSR1	100	87.438	Myotis_lucifugus
ENSMUSG00000038335	Tsr1	99	54.850	ENSNBRG00000020728	tsr1	99	54.994	Neolamprologus_brichardi
ENSMUSG00000038335	Tsr1	100	77.516	ENSNLEG00000017184	TSR1	100	80.324	Nomascus_leucogenys
ENSMUSG00000038335	Tsr1	100	72.795	ENSMEUG00000015828	TSR1	100	72.963	Notamacropus_eugenii
ENSMUSG00000038335	Tsr1	99	56.068	ENSONIG00000013131	tsr1	99	56.068	Oreochromis_niloticus
ENSMUSG00000038335	Tsr1	96	72.716	ENSOANG00000008637	TSR1	100	72.458	Ornithorhynchus_anatinus
ENSMUSG00000038335	Tsr1	100	85.572	ENSOCUG00000014256	TSR1	100	85.945	Oryctolagus_cuniculus
ENSMUSG00000038335	Tsr1	99	53.957	ENSORLG00000004926	tsr1	99	55.235	Oryzias_latipes
ENSMUSG00000038335	Tsr1	99	54.022	ENSORLG00020008792	tsr1	99	55.422	Oryzias_latipes_hni
ENSMUSG00000038335	Tsr1	99	53.837	ENSORLG00015013838	tsr1	99	55.114	Oryzias_latipes_hsok
ENSMUSG00000038335	Tsr1	99	54.282	ENSOMEG00000004830	tsr1	99	55.889	Oryzias_melastigma
ENSMUSG00000038335	Tsr1	100	85.802	ENSOGAG00000004492	TSR1	100	85.802	Otolemur_garnettii
ENSMUSG00000038335	Tsr1	100	88.184	ENSOARG00000015437	TSR1	97	88.682	Ovis_aries
ENSMUSG00000038335	Tsr1	100	85.714	ENSPPAG00000036355	TSR1	100	85.839	Pan_paniscus
ENSMUSG00000038335	Tsr1	100	85.323	ENSPPRG00000015519	-	100	85.448	Panthera_pardus
ENSMUSG00000038335	Tsr1	100	85.572	ENSPTIG00000010608	TSR1	100	85.697	Panthera_tigris_altaica
ENSMUSG00000038335	Tsr1	100	85.714	ENSPTRG00000008547	TSR1	100	85.839	Pan_troglodytes
ENSMUSG00000038335	Tsr1	100	82.733	ENSPANG00000024463	TSR1	100	83.106	Papio_anubis
ENSMUSG00000038335	Tsr1	99	54.198	ENSPKIG00000013972	tsr1	99	54.523	Paramormyrops_kingsleyae
ENSMUSG00000038335	Tsr1	88	68.785	ENSPSIG00000018258	TSR1	100	68.785	Pelodiscus_sinensis
ENSMUSG00000038335	Tsr1	99	55.843	ENSPMGG00000011577	tsr1	99	56.420	Periophthalmus_magnuspinnatus
ENSMUSG00000038335	Tsr1	100	91.781	ENSPEMG00000018033	Tsr1	100	91.781	Peromyscus_maniculatus_bairdii
ENSMUSG00000038335	Tsr1	100	77.228	ENSPCIG00000009357	TSR1	98	77.351	Phascolarctos_cinereus
ENSMUSG00000038335	Tsr1	99	54.136	ENSPFOG00000004483	TSR1	99	55.879	Poecilia_formosa
ENSMUSG00000038335	Tsr1	99	54.926	ENSPLAG00000022320	tsr1	99	55.419	Poecilia_latipinna
ENSMUSG00000038335	Tsr1	99	53.653	ENSPMEG00000004577	tsr1	99	54.742	Poecilia_mexicana
ENSMUSG00000038335	Tsr1	97	54.332	ENSPREG00000010354	tsr1	95	54.635	Poecilia_reticulata
ENSMUSG00000038335	Tsr1	100	78.245	ENSPPYG00000007792	TSR1	100	77.750	Pongo_abelii
ENSMUSG00000038335	Tsr1	53	93.023	ENSPCAG00000012973	-	72	93.023	Procavia_capensis
ENSMUSG00000038335	Tsr1	100	86.692	ENSPCOG00000017928	TSR1	100	86.816	Propithecus_coquereli
ENSMUSG00000038335	Tsr1	100	86.301	ENSPVAG00000002162	TSR1	100	86.301	Pteropus_vampyrus
ENSMUSG00000038335	Tsr1	99	55.329	ENSPNYG00000016163	tsr1	99	55.502	Pundamilia_nyererei
ENSMUSG00000038335	Tsr1	99	54.276	ENSPNAG00000008659	tsr1	99	54.719	Pygocentrus_nattereri
ENSMUSG00000038335	Tsr1	100	93.035	ENSRNOG00000002980	Tsr1	100	94.403	Rattus_norvegicus
ENSMUSG00000038335	Tsr1	100	86.211	ENSRBIG00000040016	TSR1	100	86.211	Rhinopithecus_bieti
ENSMUSG00000038335	Tsr1	100	86.211	ENSRROG00000030361	TSR1	100	86.211	Rhinopithecus_roxellana
ENSMUSG00000038335	Tsr1	96	30.826	YDL060W	-	98	30.703	Saccharomyces_cerevisiae
ENSMUSG00000038335	Tsr1	100	86.426	ENSSBOG00000020785	TSR1	100	86.426	Saimiri_boliviensis_boliviensis
ENSMUSG00000038335	Tsr1	100	75.558	ENSSHAG00000011394	TSR1	100	75.558	Sarcophilus_harrisii
ENSMUSG00000038335	Tsr1	99	55.746	ENSSFOG00015005455	tsr1	99	56.098	Scleropages_formosus
ENSMUSG00000038335	Tsr1	99	53.726	ENSSMAG00000009504	tsr1	99	54.251	Scophthalmus_maximus
ENSMUSG00000038335	Tsr1	99	54.361	ENSSDUG00000012074	tsr1	99	54.742	Seriola_dumerili
ENSMUSG00000038335	Tsr1	99	54.688	ENSSLDG00000002031	tsr1	99	55.114	Seriola_lalandi_dorsalis
ENSMUSG00000038335	Tsr1	100	72.388	ENSSARG00000000759	TSR1	100	73.010	Sorex_araneus
ENSMUSG00000038335	Tsr1	99	67.405	ENSSPUG00000007042	TSR1	99	67.282	Sphenodon_punctatus
ENSMUSG00000038335	Tsr1	99	53.837	ENSSPAG00000021951	tsr1	99	55.689	Stegastes_partitus
ENSMUSG00000038335	Tsr1	100	87.687	ENSSSCG00000038534	TSR1	100	87.687	Sus_scrofa
ENSMUSG00000038335	Tsr1	90	70.959	ENSTGUG00000005883	TSR1	100	71.175	Taeniopygia_guttata
ENSMUSG00000038335	Tsr1	99	54.909	ENSTRUG00000004665	tsr1	99	56.204	Takifugu_rubripes
ENSMUSG00000038335	Tsr1	99	55.487	ENSTNIG00000016196	tsr1	99	55.734	Tetraodon_nigroviridis
ENSMUSG00000038335	Tsr1	67	92.308	ENSTBEG00000015275	-	67	92.308	Tupaia_belangeri
ENSMUSG00000038335	Tsr1	100	87.065	ENSTTRG00000001177	TSR1	100	87.065	Tursiops_truncatus
ENSMUSG00000038335	Tsr1	100	85.767	ENSUAMG00000025160	TSR1	100	85.767	Ursus_americanus
ENSMUSG00000038335	Tsr1	97	85.678	ENSUMAG00000009294	TSR1	98	86.528	Ursus_maritimus
ENSMUSG00000038335	Tsr1	84	82.764	ENSVPAG00000000228	TSR1	100	82.764	Vicugna_pacos
ENSMUSG00000038335	Tsr1	100	84.596	ENSVVUG00000021767	TSR1	100	84.969	Vulpes_vulpes
ENSMUSG00000038335	Tsr1	99	58.578	ENSXETG00000023797	tsr1	100	60.212	Xenopus_tropicalis
ENSMUSG00000038335	Tsr1	99	55.556	ENSXCOG00000009635	tsr1	99	56.373	Xiphophorus_couchianus
ENSMUSG00000038335	Tsr1	99	53.976	ENSXMAG00000001397	tsr1	96	54.897	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component
GO:0034511	U3 snoRNA binding	21873635.	IBA	Function
GO:0042254	ribosome biogenesis	-	IEA	Process