EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038366 (Gene tree)
Gene ID: 16796
Gene Symbol: Lasp1
Alias: Def-4|SH3P6|Tg(11Col1a1)NG|Tg(Col1a1-lacZ)1Ngma
Full Name: LIM and SH3 protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 39765
Position: chr11: 97799000-97838764
Accession: 109656
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000148280	-	686	XM_006532342	ENSMUSP00000123050	186 (aa)	XP_006532405	A2A6H0
ENSMUST00000107569	-	686	-	-	- (aa)	-	-
ENSMUST00000138919	-	112	-	ENSMUSP00000114407	12 (aa)	-	A2A6G2
ENSMUST00000146572	-	376	-	ENSMUSP00000121907	89 (aa)	-	A2A6G6
ENSMUST00000043843	-	3540	XM_006532341	ENSMUSP00000042123	263 (aa)	XP_006532404	Q61792
ENSMUST00000152962	-	433	-	ENSMUSP00000120645	99 (aa)	-	A2A6G7
ENSMUST00000129558	-	487	-	ENSMUSP00000123165	103 (aa)	-	A2A6G8
ENSMUST00000107568	-	580	-	-	- (aa)	-	-
ENSMUST00000155762	-	310	-	ENSMUSP00000119538	56 (aa)	-	A2A6H1
ENSMUST00000127033	-	386	-	ENSMUSP00000127792	70 (aa)	-	E9Q0N6
ENSMUST00000153520	-	503	-	ENSMUSP00000120458	47 (aa)	-	A2A6G4
ENSMUST00000136723	-	322	-	ENSMUSP00000114306	69 (aa)	-	A2A6G5
ENSMUST00000127575	-	758	-	-	- (aa)	-	-
ENSMUST00000143571	-	429	-	ENSMUSP00000116102	28 (aa)	-	A2A6G0
ENSMUST00000134428	-	337	-	ENSMUSP00000119797	18 (aa)	-	A2A6G3
ENSMUST00000129828	-	1207	-	ENSMUSP00000115308	129 (aa)	-	A2A6G9

Gene Model

Click here to download ENSMUSG00000038366's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038366's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038366	Lasp1	100	100.000	ENSG00000002834	LASP1	100	95.437	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003779	actin binding	-	IEA	Function
GO:0005515	protein binding	15465019.19064729.	IPI	Function
GO:0005737	cytoplasm	15465019.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005925	focal adhesion	15465019.	IDA	Component
GO:0006811	ion transport	-	ISO	Process
GO:0015075	ion transmembrane transporter activity	-	ISO	Function
GO:0030864	cortical actin cytoskeleton	-	ISO	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0051015	actin filament binding	15465019.	IDA	Function