EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038384 (Gene tree)
Gene ID: 208043
Gene Symbol: Setd1b
Alias: KMT2G
Full Name: SET domain containing 1B
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 26437 bases
Position: chr5:123142193-123168629
Accession: 2652820
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000134461	RRM_1	PF00076.22	3.7e-10	1	1
ENSMUSP00000133933	RRM_1	PF00076.22	3.7e-10	1	1
ENSMUSP00000134686	RRM_1	PF00076.22	3.7e-10	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000162839	-	648	-	ENSMUSP00000134353	87 (aa)	-	G3UZ56
ENSMUST00000100731	-	3365	-	-	- (aa)	-	-
ENSMUST00000174836	-	7515	-	ENSMUSP00000134461	1944 (aa)	-	Q8CFT2
ENSMUST00000056053	-	7362	XM_006530238	ENSMUSP00000134686	1985 (aa)	XP_006530301	Q8CFT2
ENSMUST00000163030	-	8857	XM_006530237	ENSMUSP00000133933	1985 (aa)	XP_006530300	Q8CFT2
ENSMUST00000173221	-	2375	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000038384's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038384's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038384	Setd1b	66	75.751	ENSAMEG00000014455	SETD1B	61	79.445	Ailuropoda_melanoleuca
ENSMUSG00000038384	Setd1b	70	62.915	ENSAPLG00000005217	SETD1B	55	74.074	Anas_platyrhynchos
ENSMUSG00000038384	Setd1b	62	90.836	ENSCAFG00020016619	SETD1B	95	90.836	Canis_lupus_dingo
ENSMUSG00000038384	Setd1b	71	85.202	ENSCHIG00000013406	SETD1B	55	95.775	Capra_hircus
ENSMUSG00000038384	Setd1b	67	93.103	ENSTSYG00000033777	SETD1B	72	93.103	Carlito_syrichta
ENSMUSG00000038384	Setd1b	95	91.185	ENSCATG00000035803	SETD1B	97	91.337	Cercocebus_atys
ENSMUSG00000038384	Setd1b	90	91.364	ENSCLAG00000013200	SETD1B	89	96.983	Chinchilla_lanigera
ENSMUSG00000038384	Setd1b	88	80.647	ENSCSAG00000002187	SETD1B	97	80.963	Chlorocebus_sabaeus
ENSMUSG00000038384	Setd1b	87	89.655	ENSCANG00000023445	SETD1B	97	88.788	Colobus_angolensis_palliatus
ENSMUSG00000038384	Setd1b	84	98.045	ENSCGRG00000018075	Setd1b	95	98.045	Cricetulus_griseus_crigri
ENSMUSG00000038384	Setd1b	86	55.656	ENSCVAG00000022068	setd1ba	50	83.775	Cyprinodon_variegatus
ENSMUSG00000038384	Setd1b	96	91.150	ENSEASG00005012369	SETD1B	99	91.593	Equus_asinus_asinus
ENSMUSG00000038384	Setd1b	54	97.183	ENSECAG00000006549	SETD1B	52	97.183	Equus_caballus
ENSMUSG00000038384	Setd1b	52	90.705	ENSFCAG00000013185	SETD1B	53	91.007	Felis_catus
ENSMUSG00000038384	Setd1b	84	90.787	ENSFDAG00000015120	SETD1B	62	91.097	Fukomys_damarensis
ENSMUSG00000038384	Setd1b	84	56.240	ENSGAFG00000008712	setd1ba	52	83.553	Gambusia_affinis
ENSMUSG00000038384	Setd1b	52	94.667	ENSGGOG00000006715	SETD1B	55	95.913	Gorilla_gorilla
ENSMUSG00000038384	Setd1b	86	94.044	ENSLAFG00000026518	SETD1B	72	94.366	Loxodonta_africana
ENSMUSG00000038384	Setd1b	65	79.189	ENSMFAG00000030930	SETD1B	99	81.455	Macaca_fascicularis
ENSMUSG00000038384	Setd1b	99	82.011	ENSMNEG00000014228	SETD1B	99	81.489	Macaca_nemestrina
ENSMUSG00000038384	Setd1b	94	90.981	ENSMLEG00000039573	SETD1B	96	91.139	Mandrillus_leucophaeus
ENSMUSG00000038384	Setd1b	100	98.693	MGP_CAROLIEiJ_G0027720	Setd1b	100	98.693	Mus_caroli
ENSMUSG00000038384	Setd1b	100	97.445	MGP_PahariEiJ_G0024300	Setd1b	100	97.445	Mus_pahari
ENSMUSG00000038384	Setd1b	74	91.904	ENSODEG00000010155	SETD1B	73	92.526	Octodon_degus
ENSMUSG00000038384	Setd1b	96	78.384	ENSOCUG00000017708	SETD1B	98	91.966	Oryctolagus_cuniculus
ENSMUSG00000038384	Setd1b	99	86.407	ENSOGAG00000034809	SETD1B	99	86.246	Otolemur_garnettii
ENSMUSG00000038384	Setd1b	67	97.544	ENSPPRG00000021041	SETD1B	97	93.151	Panthera_pardus
ENSMUSG00000038384	Setd1b	74	75.738	ENSPCIG00000028605	SETD1B	85	78.165	Phascolarctos_cinereus
ENSMUSG00000038384	Setd1b	62	91.158	ENSRNOG00000001337	Setd1b	62	90.113	Rattus_norvegicus
ENSMUSG00000038384	Setd1b	62	80.837	ENSRBIG00000034516	SETD1B	62	79.967	Rhinopithecus_bieti
ENSMUSG00000038384	Setd1b	61	84.840	ENSRROG00000011844	SETD1B	62	79.051	Rhinopithecus_roxellana
ENSMUSG00000038384	Setd1b	72	90.071	ENSSBOG00000033322	SETD1B	81	90.071	Saimiri_boliviensis_boliviensis
ENSMUSG00000038384	Setd1b	69	62.802	ENSSFOG00015004814	SETD1B	61	86.622	Scleropages_formosus
ENSMUSG00000038384	Setd1b	73	88.991	ENSSSCG00000009806	SETD1B	68	89.024	Sus_scrofa
ENSMUSG00000038384	Setd1b	58	87.197	ENSUAMG00000008729	SETD1B	60	87.370	Ursus_americanus
ENSMUSG00000038384	Setd1b	94	56.641	ENSXETG00000003760	setd1b	55	71.868	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	24550110.	IDA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0018024	histone-lysine N-methyltransferase activity	-	IEA	Function
GO:0032259	methylation	-	IEA	Process
GO:0048188	Set1C/COMPASS complex	-	IEA	Component
GO:0051568	histone H3-K4 methylation	-	IEA	Process