EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038398 (Gene tree)
Gene ID: 67031
Gene Symbol: Upf3a
Alias: 2600001C03Rik|4930546M19Rik|RENT3A|UPF3
Full Name: UPF3 regulator of nonsense transcripts homolog A (yeast)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 13579 bases
Position: chr8:13785615-13799193
Accession: 1914281
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000037354	Smg4_UPF3	PF03467.15	3.8e-49	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000043767	-	2057	XM_006508860	ENSMUSP00000037354	422 (aa)	XP_006508923	Q3ULJ3
ENSMUST00000211724	-	3698	-	-	- (aa)	-	-
ENSMUST00000211643	-	1131	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000038398's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038398's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038398	Upf3a	99	70.276	ENSG00000169062	UPF3A	99	73.077	Homo_sapiens
ENSMUSG00000038398	Upf3a	57	63.200	ENSAPOG00000012775	upf3b	78	51.247	Acanthochromis_polyacanthus
ENSMUSG00000038398	Upf3a	92	70.050	ENSAMEG00000004259	UPF3A	88	70.050	Ailuropoda_melanoleuca
ENSMUSG00000038398	Upf3a	57	61.200	ENSAOCG00000000706	upf3b	78	48.468	Amphiprion_ocellaris
ENSMUSG00000038398	Upf3a	57	63.200	ENSAPEG00000005545	upf3b	78	50.276	Amphiprion_percula
ENSMUSG00000038398	Upf3a	89	59.737	ENSATEG00000005843	upf3a	81	59.737	Anabas_testudineus
ENSMUSG00000038398	Upf3a	84	66.120	ENSACAG00000001540	UPF3A	88	66.120	Anolis_carolinensis
ENSMUSG00000038398	Upf3a	99	66.359	ENSANAG00000021713	UPF3A	87	66.506	Aotus_nancymaae
ENSMUSG00000038398	Upf3a	67	49.826	ENSANAG00000025598	-	74	41.892	Aotus_nancymaae
ENSMUSG00000038398	Upf3a	88	59.416	ENSAMXG00000002608	upf3a	82	59.416	Astyanax_mexicanus
ENSMUSG00000038398	Upf3a	95	66.184	ENSCJAG00000019102	UPF3A	87	66.747	Callithrix_jacchus
ENSMUSG00000038398	Upf3a	99	70.252	ENSCAFG00000006504	UPF3A	89	70.192	Canis_familiaris
ENSMUSG00000038398	Upf3a	99	70.575	ENSCAFG00020014268	UPF3A	87	70.673	Canis_lupus_dingo
ENSMUSG00000038398	Upf3a	99	67.742	ENSCHIG00000008682	UPF3A	86	68.203	Capra_hircus
ENSMUSG00000038398	Upf3a	74	64.724	ENSTSYG00000001918	UPF3A	87	65.031	Carlito_syrichta
ENSMUSG00000038398	Upf3a	89	69.072	ENSCPOG00000006824	UPF3A	90	69.072	Cavia_porcellus
ENSMUSG00000038398	Upf3a	99	68.433	ENSCCAG00000018406	UPF3A	87	68.599	Cebus_capucinus
ENSMUSG00000038398	Upf3a	99	70.824	ENSCATG00000029733	UPF3A	87	70.443	Cercocebus_atys
ENSMUSG00000038398	Upf3a	99	69.626	ENSCSAG00000017388	UPF3A	87	69.193	Chlorocebus_sabaeus
ENSMUSG00000038398	Upf3a	99	83.412	ENSCGRG00001017387	Upf3a	99	83.412	Cricetulus_griseus_chok1gshd
ENSMUSG00000038398	Upf3a	53	57.709	ENSCGRG00000007627	Upf3b	56	61.864	Cricetulus_griseus_crigri
ENSMUSG00000038398	Upf3a	99	82.938	ENSCGRG00000001468	Upf3a	95	83.168	Cricetulus_griseus_crigri
ENSMUSG00000038398	Upf3a	54	62.185	ENSCSEG00000002046	upf3b	72	49.713	Cynoglossus_semilaevis
ENSMUSG00000038398	Upf3a	92	54.300	ENSCSEG00000005106	upf3a	83	59.000	Cynoglossus_semilaevis
ENSMUSG00000038398	Upf3a	87	59.467	ENSCVAG00000022333	upf3a	80	59.467	Cyprinodon_variegatus
ENSMUSG00000038398	Upf3a	87	56.250	ENSDARG00000069297	upf3a	81	57.373	Danio_rerio
ENSMUSG00000038398	Upf3a	89	69.975	ENSDNOG00000034391	UPF3A	89	70.229	Dasypus_novemcinctus
ENSMUSG00000038398	Upf3a	96	59.479	ENSETEG00000010110	UPF3A	87	59.330	Echinops_telfairi
ENSMUSG00000038398	Upf3a	99	68.664	ENSEASG00005021884	UPF3A	85	68.193	Equus_asinus_asinus
ENSMUSG00000038398	Upf3a	95	67.952	ENSECAG00000017141	UPF3A	85	67.952	Equus_caballus
ENSMUSG00000038398	Upf3a	52	63.636	ENSELUG00000020389	upf3b	51	61.024	Esox_lucius
ENSMUSG00000038398	Upf3a	84	59.887	ENSELUG00000011050	upf3a	74	59.887	Esox_lucius
ENSMUSG00000038398	Upf3a	95	68.269	ENSFCAG00000014602	UPF3A	87	68.269	Felis_catus
ENSMUSG00000038398	Upf3a	52	58.036	ENSFALG00000001569	UPF3B	85	47.552	Ficedula_albicollis
ENSMUSG00000038398	Upf3a	76	61.493	ENSGMOG00000019615	upf3a	100	60.597	Gadus_morhua
ENSMUSG00000038398	Upf3a	57	59.839	ENSGMOG00000001621	upf3b	52	59.839	Gadus_morhua
ENSMUSG00000038398	Upf3a	76	62.617	ENSGACG00000001972	upf3a	100	62.617	Gasterosteus_aculeatus
ENSMUSG00000038398	Upf3a	58	57.678	ENSGACG00000017435	upf3b	77	65.116	Gasterosteus_aculeatus
ENSMUSG00000038398	Upf3a	98	55.131	ENSGGOG00000043074	-	83	56.313	Gorilla_gorilla
ENSMUSG00000038398	Upf3a	99	69.585	ENSGGOG00000015428	UPF3A	87	69.639	Gorilla_gorilla
ENSMUSG00000038398	Upf3a	90	57.949	ENSGGOG00000041219	-	81	60.598	Gorilla_gorilla
ENSMUSG00000038398	Upf3a	90	70.789	ENSHGLG00000001544	UPF3A	90	70.789	Heterocephalus_glaber_female
ENSMUSG00000038398	Upf3a	90	70.789	ENSHGLG00100013244	UPF3A	90	70.789	Heterocephalus_glaber_male
ENSMUSG00000038398	Upf3a	57	60.569	ENSHCOG00000017004	upf3b	53	60.569	Hippocampus_comes
ENSMUSG00000038398	Upf3a	88	59.259	ENSIPUG00000023450	upf3a	82	59.259	Ictalurus_punctatus
ENSMUSG00000038398	Upf3a	55	64.490	ENSIPUG00000019249	upf3b	91	48.635	Ictalurus_punctatus
ENSMUSG00000038398	Upf3a	54	75.652	ENSSTOG00000030282	-	87	77.778	Ictidomys_tridecemlineatus
ENSMUSG00000038398	Upf3a	92	57.500	ENSKMAG00000004381	upf3a	82	58.291	Kryptolebias_marmoratus
ENSMUSG00000038398	Upf3a	87	53.639	ENSLBEG00000021570	upf3a	80	53.333	Labrus_bergylta
ENSMUSG00000038398	Upf3a	57	59.200	ENSLBEG00000028689	upf3b	54	59.200	Labrus_bergylta
ENSMUSG00000038398	Upf3a	59	41.727	ENSLACG00000006645	UPF3A	83	37.380	Latimeria_chalumnae
ENSMUSG00000038398	Upf3a	56	64.919	ENSLOCG00000015238	upf3b	57	64.844	Lepisosteus_oculatus
ENSMUSG00000038398	Upf3a	92	57.895	ENSLOCG00000002665	upf3a	81	60.212	Lepisosteus_oculatus
ENSMUSG00000038398	Upf3a	76	62.500	ENSLAFG00000023358	UPF3A	83	61.671	Loxodonta_africana
ENSMUSG00000038398	Upf3a	67	50.662	ENSLAFG00000001267	UPF3B	80	49.086	Loxodonta_africana
ENSMUSG00000038398	Upf3a	99	66.824	ENSMFAG00000045016	UPF3A	87	66.502	Macaca_fascicularis
ENSMUSG00000038398	Upf3a	99	67.217	ENSMMUG00000007449	UPF3A	86	67.901	Macaca_mulatta
ENSMUSG00000038398	Upf3a	99	65.138	ENSMNEG00000036402	UPF3A	80	69.895	Macaca_nemestrina
ENSMUSG00000038398	Upf3a	88	69.415	ENSMLEG00000014726	UPF3A	89	68.312	Mandrillus_leucophaeus
ENSMUSG00000038398	Upf3a	92	58.734	ENSMAMG00000018364	upf3a	80	58.734	Mastacembelus_armatus
ENSMUSG00000038398	Upf3a	80	65.903	ENSMGAG00000014837	UPF3A	87	65.903	Meleagris_gallopavo
ENSMUSG00000038398	Upf3a	84	81.461	ENSMOCG00000000550	Upf3a	98	81.461	Microtus_ochrogaster
ENSMUSG00000038398	Upf3a	85	68.194	ENSMODG00000003159	UPF3A	86	68.564	Monodelphis_domestica
ENSMUSG00000038398	Upf3a	100	95.735	MGP_CAROLIEiJ_G0030848	Upf3a	100	95.735	Mus_caroli
ENSMUSG00000038398	Upf3a	100	94.550	MGP_PahariEiJ_G0021311	Upf3a	100	94.550	Mus_pahari
ENSMUSG00000038398	Upf3a	100	99.052	MGP_SPRETEiJ_G0031958	Upf3a	100	99.052	Mus_spretus
ENSMUSG00000038398	Upf3a	99	69.676	ENSMPUG00000009139	UPF3A	86	69.249	Mustela_putorius_furo
ENSMUSG00000038398	Upf3a	84	69.542	ENSMLUG00000015905	UPF3A	88	69.542	Myotis_lucifugus
ENSMUSG00000038398	Upf3a	99	79.858	ENSNGAG00000019314	Upf3a	99	79.858	Nannospalax_galili
ENSMUSG00000038398	Upf3a	99	69.425	ENSNLEG00000007563	UPF3A	87	68.990	Nomascus_leucogenys
ENSMUSG00000038398	Upf3a	70	66.239	ENSOPRG00000008846	-	58	66.390	Ochotona_princeps
ENSMUSG00000038398	Upf3a	51	77.523	ENSODEG00000009176	-	86	77.523	Octodon_degus
ENSMUSG00000038398	Upf3a	84	56.403	ENSOANG00000006985	-	95	56.403	Ornithorhynchus_anatinus
ENSMUSG00000038398	Upf3a	81	64.124	ENSOCUG00000008450	UPF3A	77	61.968	Oryctolagus_cuniculus
ENSMUSG00000038398	Upf3a	87	58.919	ENSORLG00000010911	upf3a	79	59.249	Oryzias_latipes
ENSMUSG00000038398	Upf3a	65	55.439	ENSORLG00000001026	upf3b	66	53.074	Oryzias_latipes
ENSMUSG00000038398	Upf3a	86	57.796	ENSORLG00020014317	upf3a	79	57.796	Oryzias_latipes_hni
ENSMUSG00000038398	Upf3a	65	55.789	ENSORLG00020003758	upf3b	66	53.398	Oryzias_latipes_hni
ENSMUSG00000038398	Upf3a	65	55.789	ENSORLG00015012954	upf3b	84	47.583	Oryzias_latipes_hsok
ENSMUSG00000038398	Upf3a	87	56.533	ENSOMEG00000014425	upf3a	80	58.333	Oryzias_melastigma
ENSMUSG00000038398	Upf3a	65	47.857	ENSOMEG00000014736	upf3b	66	54.693	Oryzias_melastigma
ENSMUSG00000038398	Upf3a	91	69.773	ENSOGAG00000004788	UPF3A	96	69.697	Otolemur_garnettii
ENSMUSG00000038398	Upf3a	66	48.239	ENSOARG00000007869	-	69	45.070	Ovis_aries
ENSMUSG00000038398	Upf3a	97	65.258	ENSOARG00000009004	UPF3A	83	68.687	Ovis_aries
ENSMUSG00000038398	Upf3a	99	69.746	ENSPPAG00000042267	UPF3A	87	69.639	Pan_paniscus
ENSMUSG00000038398	Upf3a	95	68.029	ENSPPRG00000025062	UPF3A	87	68.029	Panthera_pardus
ENSMUSG00000038398	Upf3a	99	70.276	ENSPTRG00000006073	UPF3A	87	69.639	Pan_troglodytes
ENSMUSG00000038398	Upf3a	90	55.013	ENSPTRG00000051640	-	87	54.592	Pan_troglodytes
ENSMUSG00000038398	Upf3a	84	58.516	ENSPTRG00000041187	-	81	58.242	Pan_troglodytes
ENSMUSG00000038398	Upf3a	84	57.465	ENSPTRG00000041835	-	81	57.183	Pan_troglodytes
ENSMUSG00000038398	Upf3a	99	70.353	ENSPANG00000004346	UPF3A	87	69.951	Papio_anubis
ENSMUSG00000038398	Upf3a	56	63.052	ENSPKIG00000019226	upf3b	75	68.376	Paramormyrops_kingsleyae
ENSMUSG00000038398	Upf3a	84	65.940	ENSPSIG00000007468	UPF3A	89	65.940	Pelodiscus_sinensis
ENSMUSG00000038398	Upf3a	99	85.545	ENSPEMG00000019968	-	99	85.545	Peromyscus_maniculatus_bairdii
ENSMUSG00000038398	Upf3a	78	71.429	ENSPCIG00000019590	-	80	76.630	Phascolarctos_cinereus
ENSMUSG00000038398	Upf3a	86	44.935	ENSPCIG00000028914	UPF3B	80	45.780	Phascolarctos_cinereus
ENSMUSG00000038398	Upf3a	87	52.785	ENSPFOG00000013222	upf3a	79	61.351	Poecilia_formosa
ENSMUSG00000038398	Upf3a	99	69.585	ENSPPYG00000005536	UPF3A	87	69.639	Pongo_abelii
ENSMUSG00000038398	Upf3a	73	65.931	ENSPCAG00000013124	UPF3A	62	67.003	Procavia_capensis
ENSMUSG00000038398	Upf3a	99	64.977	ENSPVAG00000005656	UPF3A	87	65.700	Pteropus_vampyrus
ENSMUSG00000038398	Upf3a	52	67.123	ENSPNAG00000021528	upf3b	72	67.123	Pygocentrus_nattereri
ENSMUSG00000038398	Upf3a	88	58.667	ENSPNAG00000019532	upf3a	82	58.667	Pygocentrus_nattereri
ENSMUSG00000038398	Upf3a	94	90.380	ENSRNOG00000017397	Upf3a	97	90.380	Rattus_norvegicus
ENSMUSG00000038398	Upf3a	86	71.739	ENSRBIG00000034007	UPF3A	86	70.681	Rhinopithecus_bieti
ENSMUSG00000038398	Upf3a	84	72.472	ENSRROG00000012212	UPF3A	76	72.472	Rhinopithecus_roxellana
ENSMUSG00000038398	Upf3a	99	60.599	ENSSBOG00000029989	UPF3A	86	60.482	Saimiri_boliviensis_boliviensis
ENSMUSG00000038398	Upf3a	84	45.812	ENSSHAG00000008634	UPF3B	79	49.223	Sarcophilus_harrisii
ENSMUSG00000038398	Upf3a	86	66.844	ENSSHAG00000009895	UPF3A	90	66.844	Sarcophilus_harrisii
ENSMUSG00000038398	Upf3a	59	64.729	ENSSFOG00015005614	upf3b	85	49.497	Scleropages_formosus
ENSMUSG00000038398	Upf3a	92	55.696	ENSSFOG00015021851	upf3a	83	55.416	Scleropages_formosus
ENSMUSG00000038398	Upf3a	85	58.402	ENSSMAG00000003858	upf3a	79	72.650	Scophthalmus_maximus
ENSMUSG00000038398	Upf3a	57	62.550	ENSSMAG00000012913	upf3b	69	66.977	Scophthalmus_maximus
ENSMUSG00000038398	Upf3a	92	49.239	ENSSDUG00000009680	upf3a	80	58.081	Seriola_dumerili
ENSMUSG00000038398	Upf3a	84	58.904	ENSSARG00000007262	UPF3A	89	55.342	Sorex_araneus
ENSMUSG00000038398	Upf3a	55	62.705	ENSSPAG00000009989	upf3b	78	50.416	Stegastes_partitus
ENSMUSG00000038398	Upf3a	99	66.207	ENSSSCG00000024679	UPF3A	83	66.587	Sus_scrofa
ENSMUSG00000038398	Upf3a	87	66.929	ENSTGUG00000009493	UPF3A	96	66.929	Taeniopygia_guttata
ENSMUSG00000038398	Upf3a	89	58.115	ENSTRUG00000012730	upf3a	82	58.115	Takifugu_rubripes
ENSMUSG00000038398	Upf3a	87	49.865	ENSTNIG00000014973	upf3a	95	49.476	Tetraodon_nigroviridis
ENSMUSG00000038398	Upf3a	68	61.873	ENSTBEG00000017186	-	95	61.873	Tupaia_belangeri
ENSMUSG00000038398	Upf3a	99	58.621	ENSTTRG00000015414	UPF3A	87	58.654	Tursiops_truncatus
ENSMUSG00000038398	Upf3a	84	69.672	ENSVPAG00000003525	UPF3A	89	69.672	Vicugna_pacos
ENSMUSG00000038398	Upf3a	99	67.816	ENSVVUG00000013538	UPF3A	84	68.585	Vulpes_vulpes
ENSMUSG00000038398	Upf3a	85	46.335	ENSXETG00000007440	upf3b	71	69.512	Xenopus_tropicalis
ENSMUSG00000038398	Upf3a	86	56.522	ENSXETG00000002572	upf3a	87	56.522	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003729	mRNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006986	response to unfolded protein	-	ISO	Process
GO:0035145	exon-exon junction complex	-	ISO	Component
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0042162	telomeric DNA binding	-	ISO	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0045727	positive regulation of translation	21873635.	IBA	Process
GO:0045727	positive regulation of translation	-	ISO	Process