EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038406 (Gene tree)
Gene ID: 233208
Gene Symbol: Scaf1
Alias: -
Full Name: SR-related CTD-associated factor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 13416
Position: chr7: 45002948-45016363
Accession: 2141980
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000085383	-	4293	XM_011250855	ENSMUSP00000082501	1256 (aa)	XP_011249157	Q5U4C3
ENSMUST00000211680	-	661	-	ENSMUSP00000147712	43 (aa)	-	A0A1B0GRY2
ENSMUST00000209989	-	625	-	-	- (aa)	-	-
ENSMUST00000211735	-	4209	XM_006540821	ENSMUSP00000148251	1256 (aa)	XP_006540884	Q5U4C3
ENSMUST00000210056	-	1409	-	-	- (aa)	-	-
ENSMUST00000209521	-	231	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000038406's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038406's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038406	Scaf1	100	97.674	ENSG00000126461	SCAF1	100	90.909	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0006366	transcription by RNA polymerase II	-	ISO	Process
GO:0006397	mRNA processing	-	ISO	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0019904	protein domain specific binding	-	ISO	Function