EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038429 (Gene tree)
Gene ID: 22225
Gene Symbol: Usp5
Alias: Ucht
Full Name: ubiquitin specific peptidase 5 (isopeptidase T)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 14466
Position: chr6: 124815019-124829484
Accession: 1347343
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000141042	-	464	-	-	- (aa)	-	-
ENSMUST00000131805	-	1112	-	-	- (aa)	-	-
ENSMUST00000146098	-	774	-	-	- (aa)	-	-
ENSMUST00000153306	-	825	-	ENSMUSP00000118200	209 (aa)	-	D3YYA5
ENSMUST00000122110	-	3076	-	ENSMUSP00000114000	835 (aa)	-	Q3U4W8
ENSMUST00000154189	-	453	-	-	- (aa)	-	-
ENSMUST00000129159	-	394	-	-	- (aa)	-	-
ENSMUST00000047510	-	3213	XM_006505916	ENSMUSP00000041299	858 (aa)	XP_006505979	P56399
ENSMUST00000142058	-	924	-	ENSMUSP00000117439	303 (aa)	-	D3Z4K7

Gene Model

Click here to download ENSMUSG00000038429's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038429's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038429	Usp5	100	98.368	ENSG00000111667	USP5	100	98.368	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004197	cysteine-type endopeptidase activity	21873635.	IBA	Function
GO:0004843	thiol-dependent ubiquitin-specific protease activity	21873635.	IBA	Function
GO:0004843	thiol-dependent ubiquitin-specific protease activity	-	ISO	Function
GO:0005515	protein binding	19156909.23055941.	IPI	Function
GO:0006511	ubiquitin-dependent protein catabolic process	-	IEA	Process
GO:0008233	peptidase activity	-	IEA	Function
GO:0008234	cysteine-type peptidase activity	-	IEA	Function
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016579	protein deubiquitination	21873635.	IBA	Process
GO:0016579	protein deubiquitination	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	-	IEA	Function
GO:0043130	ubiquitin binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0071108	protein K48-linked deubiquitination	-	ISO	Process