EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038446 (Gene tree)
Gene ID: 71713
Gene Symbol: Cdc40
Alias: 1200003H23Rik|EHB3|PRP17
Full Name: cell division cycle 40
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 51691
Position: chr10: 40831621-40883311
Accession: 1918963
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000216025	-	2195	-	-	- (aa)	-	-
ENSMUST00000215625	-	1523	-	-	- (aa)	-	-
ENSMUST00000215441	-	1643	-	-	- (aa)	-	-
ENSMUST00000044166	-	3534	-	ENSMUSP00000044305	579 (aa)	-	Q9DC48
ENSMUST00000215051	-	2925	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000038446's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038446's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038446	Cdc40	100	98.791	ENSG00000168438	CDC40	100	98.791	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0071007	U2-type catalytic step 2 spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component