EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000038510 (Gene tree)
Gene ID
67239
Gene Symbol
Rpf2
Alias
2810470K21Rik|Bxdc1
Full Name
ribosome production factor 2 homolog
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
23791 bases
Position
chr10:40223246-40247036
Accession
1914489
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000035456BrixPF04427.182.6e-4411
ENSMUSP00000138581BrixPF04427.183.2e-4411
ENSMUSP00000138425BrixPF04427.184.4e-3711
ENSMUSP00000138646BrixPF04427.183e-2411
ENSMUSP00000138750BrixPF04427.187.6e-2111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000183309-1296-ENSMUSP00000138581306 (aa)-Q9JJ80
ENSMUST00000181995-799XM_006512828ENSMUSP00000138425257 (aa)XP_006512891S4R1Y5
ENSMUST00000182287-523--- (aa)--
ENSMUST00000045114-1853-ENSMUSP00000035456273 (aa)-G3X926
ENSMUST00000183052-667-ENSMUSP00000138646205 (aa)-S4R2H5
ENSMUST00000183114-479-ENSMUSP00000138750153 (aa)-S4R2R2
Gene Model
Click here to download ENSMUSG00000038510's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038510's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000038510Rpf210092.674ENSG00000197498RPF210094.860Homo_sapiens
ENSMUSG00000038510Rpf210080.198ENSAPOG00000005714rpf29975.410Acanthochromis_polyacanthus
ENSMUSG00000038510Rpf210091.503ENSAMEG00000015753RPF210091.503Ailuropoda_melanoleuca
ENSMUSG00000038510Rpf25972.527ENSACIG00000006659rpf29869.512Amphilophus_citrinellus
ENSMUSG00000038510Rpf210079.208ENSAOCG00000005173rpf29974.754Amphiprion_ocellaris
ENSMUSG00000038510Rpf210079.208ENSAPEG00000004003rpf29974.754Amphiprion_percula
ENSMUSG00000038510Rpf210077.228ENSATEG00000012818rpf29973.026Anabas_testudineus
ENSMUSG00000038510Rpf210079.630ENSAPLG00000008812RPF210084.615Anas_platyrhynchos
ENSMUSG00000038510Rpf210083.333ENSACAG00000011270RPF29681.081Anolis_carolinensis
ENSMUSG00000038510Rpf210088.235ENSANAG00000034834-10084.967Aotus_nancymaae
ENSMUSG00000038510Rpf29579.200ENSANAG00000025459-9773.203Aotus_nancymaae
ENSMUSG00000038510Rpf29969.307ENSANAG00000021067-9869.307Aotus_nancymaae
ENSMUSG00000038510Rpf210073.203ENSANAG00000033736-10074.183Aotus_nancymaae
ENSMUSG00000038510Rpf210089.623ENSANAG00000026549-10088.235Aotus_nancymaae
ENSMUSG00000038510Rpf210072.727ENSAMXG00000035201rpf29971.803Astyanax_mexicanus
ENSMUSG00000038510Rpf210092.674ENSBTAG00000016584RPF210092.484Bos_taurus
ENSMUSG00000038510Rpf29840.860WBGene00021830Y54E10A.109644.014Caenorhabditis_elegans
ENSMUSG00000038510Rpf210093.385ENSCJAG00000038330RPF210092.484Callithrix_jacchus
ENSMUSG00000038510Rpf210092.308ENSCAFG00000003918RPF210092.157Canis_familiaris
ENSMUSG00000038510Rpf210091.509ENSCHIG00000022499RPF210087.582Capra_hircus
ENSMUSG00000038510Rpf210089.744ENSTSYG00000013924RPF210089.542Carlito_syrichta
ENSMUSG00000038510Rpf210076.515ENSCAPG00000014257RPF210071.895Cavia_aperea
ENSMUSG00000038510Rpf210094.163ENSCPOG00000006797RPF210094.163Cavia_porcellus
ENSMUSG00000038510Rpf29969.118ENSCCAG00000028553-9869.967Cebus_capucinus
ENSMUSG00000038510Rpf210090.523ENSCCAG00000030365-10090.523Cebus_capucinus
ENSMUSG00000038510Rpf29974.444ENSCCAG00000028906-9880.258Cebus_capucinus
ENSMUSG00000038510Rpf210093.040ENSCCAG00000030864-10092.484Cebus_capucinus
ENSMUSG00000038510Rpf29978.333ENSCATG00000029725-9888.372Cercocebus_atys
ENSMUSG00000038510Rpf210073.529ENSCATG00000034352-10073.529Cercocebus_atys
ENSMUSG00000038510Rpf210093.385ENSCLAG00000010393-10093.385Chinchilla_lanigera
ENSMUSG00000038510Rpf210078.058ENSCLAG00000010874-10076.898Chinchilla_lanigera
ENSMUSG00000038510Rpf210066.667ENSCLAG00000013252-10066.667Chinchilla_lanigera
ENSMUSG00000038510Rpf210092.308ENSCHOG00000005865RPF29987.582Choloepus_hoffmanni
ENSMUSG00000038510Rpf29982.951ENSCPBG00000006504RPF29982.951Chrysemys_picta_bellii
ENSMUSG00000038510Rpf29761.818ENSCING00000008090-9857.947Ciona_intestinalis
ENSMUSG00000038510Rpf29461.479ENSCSAVG00000010672-9659.091Ciona_savignyi
ENSMUSG00000038510Rpf210092.308ENSCANG00000030665RPF210092.157Colobus_angolensis_palliatus
ENSMUSG00000038510Rpf29978.477ENSCGRG00001005262-9778.477Cricetulus_griseus_chok1gshd
ENSMUSG00000038510Rpf210096.703ENSCGRG00001007331-10096.078Cricetulus_griseus_chok1gshd
ENSMUSG00000038510Rpf210096.887ENSCGRG00000006083Rpf210096.887Cricetulus_griseus_crigri
ENSMUSG00000038510Rpf29876.415ENSCSEG00000015725rpf29973.000Cynoglossus_semilaevis
ENSMUSG00000038510Rpf210078.218ENSCVAG00000001072rpf29974.013Cyprinodon_variegatus
ENSMUSG00000038510Rpf29973.737ENSDARG00000043960rpf29969.737Danio_rerio
ENSMUSG00000038510Rpf27491.089ENSDNOG00000039270RPF29891.089Dasypus_novemcinctus
ENSMUSG00000038510Rpf210077.561ENSDORG00000026915Rpf210093.548Dipodomys_ordii
ENSMUSG00000038510Rpf29447.287FBgn0038585Non39345.973Drosophila_melanogaster
ENSMUSG00000038510Rpf29860.396ENSEBUG00000003640rpf29154.849Eptatretus_burgeri
ENSMUSG00000038510Rpf25284.810ENSEASG00005002363-9979.739Equus_asinus_asinus
ENSMUSG00000038510Rpf210091.509ENSEASG00005006927-10088.235Equus_asinus_asinus
ENSMUSG00000038510Rpf210091.509ENSECAG00000017121RPF210092.484Equus_caballus
ENSMUSG00000038510Rpf29593.000ENSEEUG00000006169RPF210075.168Erinaceus_europaeus
ENSMUSG00000038510Rpf210076.238ENSELUG00000018518rpf29475.261Esox_lucius
ENSMUSG00000038510Rpf210092.674ENSFCAG00000001527RPF210092.157Felis_catus
ENSMUSG00000038510Rpf210084.158ENSFALG00000010816RPF29983.553Ficedula_albicollis
ENSMUSG00000038510Rpf210077.778ENSFDAG00000016721-10075.904Fukomys_damarensis
ENSMUSG00000038510Rpf210092.996ENSFDAG00000005811-10092.996Fukomys_damarensis
ENSMUSG00000038510Rpf210081.000ENSFHEG00000011243rpf29873.684Fundulus_heteroclitus
ENSMUSG00000038510Rpf29572.277ENSGMOG00000002521rpf29961.279Gadus_morhua
ENSMUSG00000038510Rpf210086.538ENSGALG00000037087RPF29983.224Gallus_gallus
ENSMUSG00000038510Rpf210079.208ENSGAFG00000009537rpf29973.355Gambusia_affinis
ENSMUSG00000038510Rpf210079.208ENSGACG00000006507rpf29972.787Gasterosteus_aculeatus
ENSMUSG00000038510Rpf210079.245ENSGAGG00000016221RPF29978.689Gopherus_agassizii
ENSMUSG00000038510Rpf210076.471ENSGGOG00000001469RPF210076.471Gorilla_gorilla
ENSMUSG00000038510Rpf29983.810ENSGGOG00000024187-10084.615Gorilla_gorilla
ENSMUSG00000038510Rpf210077.228ENSHBUG00000021805rpf29973.443Haplochromis_burtoni
ENSMUSG00000038510Rpf29685.000ENSHGLG00000012697-9885.461Heterocephalus_glaber_female
ENSMUSG00000038510Rpf29980.795ENSHGLG00000012500-8081.457Heterocephalus_glaber_female
ENSMUSG00000038510Rpf210091.941ENSHGLG00000001322RPF210091.176Heterocephalus_glaber_female
ENSMUSG00000038510Rpf210091.941ENSHGLG00100012131RPF210091.176Heterocephalus_glaber_male
ENSMUSG00000038510Rpf29980.464ENSHGLG00100012473-9781.126Heterocephalus_glaber_male
ENSMUSG00000038510Rpf29982.812ENSHGLG00100002981-9882.812Heterocephalus_glaber_male
ENSMUSG00000038510Rpf29685.000ENSHGLG00100000462-9885.461Heterocephalus_glaber_male
ENSMUSG00000038510Rpf29974.908ENSHGLG00100009310-9976.753Heterocephalus_glaber_male
ENSMUSG00000038510Rpf210075.000ENSHCOG00000000225rpf29974.013Hippocampus_comes
ENSMUSG00000038510Rpf29567.391ENSIPUG00000016288rpf29673.298Ictalurus_punctatus
ENSMUSG00000038510Rpf210079.327ENSSTOG00000013114RPF210071.984Ictidomys_tridecemlineatus
ENSMUSG00000038510Rpf210095.331ENSJJAG00000009092Rpf210095.331Jaculus_jaculus
ENSMUSG00000038510Rpf210081.000ENSKMAG00000014609rpf29974.013Kryptolebias_marmoratus
ENSMUSG00000038510Rpf210081.188ENSLBEG00000011907rpf29176.265Labrus_bergylta
ENSMUSG00000038510Rpf29974.593ENSLACG00000003942RPF29974.593Latimeria_chalumnae
ENSMUSG00000038510Rpf210076.000ENSLOCG00000016992rpf29476.897Lepisosteus_oculatus
ENSMUSG00000038510Rpf210091.241ENSLAFG00000018219RPF210091.205Loxodonta_africana
ENSMUSG00000038510Rpf210075.000ENSMFAG00000036119-9975.000Macaca_fascicularis
ENSMUSG00000038510Rpf210092.674ENSMFAG00000000417RPF210092.157Macaca_fascicularis
ENSMUSG00000038510Rpf210077.778ENSMMUG00000042376-10073.701Macaca_mulatta
ENSMUSG00000038510Rpf210092.674ENSMMUG00000021532RPF210094.860Macaca_mulatta
ENSMUSG00000038510Rpf210076.797ENSMNEG00000031683RPF210076.797Macaca_nemestrina
ENSMUSG00000038510Rpf210078.333ENSMLEG00000042472-10075.908Mandrillus_leucophaeus
ENSMUSG00000038510Rpf25290.780ENSMLEG00000012574-9290.780Mandrillus_leucophaeus
ENSMUSG00000038510Rpf210075.248ENSMAMG00000004267rpf29972.131Mastacembelus_armatus
ENSMUSG00000038510Rpf210077.228ENSMZEG00005015632rpf29973.443Maylandia_zebra
ENSMUSG00000038510Rpf210082.692ENSMGAG00000013429RPF29982.895Meleagris_gallopavo
ENSMUSG00000038510Rpf29689.340ENSMAUG00000005049Rpf210096.875Mesocricetus_auratus
ENSMUSG00000038510Rpf29782.095ENSMICG00000038169-9981.967Microcebus_murinus
ENSMUSG00000038510Rpf29976.238ENSMICG00000028979-9976.238Microcebus_murinus
ENSMUSG00000038510Rpf210091.575ENSMICG00000032086-10091.503Microcebus_murinus
ENSMUSG00000038510Rpf210097.276ENSMOCG00000005634Rpf210097.276Microtus_ochrogaster
ENSMUSG00000038510Rpf29579.208ENSMMOG00000014844rpf29867.340Mola_mola
ENSMUSG00000038510Rpf29987.868ENSMODG00000017919RPF29888.215Monodelphis_domestica
ENSMUSG00000038510Rpf210076.238ENSMALG00000019046rpf29674.324Monopterus_albus
ENSMUSG00000038510Rpf210099.222MGP_CAROLIEiJ_G0015254Rpf210099.222Mus_caroli
ENSMUSG00000038510Rpf210098.537MGP_PahariEiJ_G0030671Rpf210098.537Mus_pahari
ENSMUSG00000038510Rpf210099.512MGP_SPRETEiJ_G0016063Rpf210099.512Mus_spretus
ENSMUSG00000038510Rpf210092.674ENSMPUG00000010183RPF28792.484Mustela_putorius_furo
ENSMUSG00000038510Rpf29392.913ENSMLUG00000005676RPF29992.913Myotis_lucifugus
ENSMUSG00000038510Rpf210096.498ENSNGAG00000009701Rpf210096.498Nannospalax_galili
ENSMUSG00000038510Rpf210075.248ENSNBRG00000011087rpf29973.115Neolamprologus_brichardi
ENSMUSG00000038510Rpf29390.099ENSNLEG00000011848-9891.525Nomascus_leucogenys
ENSMUSG00000038510Rpf29587.736ENSNLEG00000033597-9083.392Nomascus_leucogenys
ENSMUSG00000038510Rpf210092.308ENSNLEG00000027819RPF210091.830Nomascus_leucogenys
ENSMUSG00000038510Rpf28091.429ENSMEUG00000006421RPF210070.134Notamacropus_eugenii
ENSMUSG00000038510Rpf210087.908ENSODEG00000019144-10087.908Octodon_degus
ENSMUSG00000038510Rpf29685.115ENSODEG00000006584-10080.719Octodon_degus
ENSMUSG00000038510Rpf210078.689ENSODEG00000002442-9973.597Octodon_degus
ENSMUSG00000038510Rpf29280.556ENSODEG00000006939-9678.049Octodon_degus
ENSMUSG00000038510Rpf210093.774ENSODEG00000013529-10093.774Octodon_degus
ENSMUSG00000038510Rpf29674.806ENSODEG00000003531-10076.364Octodon_degus
ENSMUSG00000038510Rpf210075.000ENSONIG00000011383rpf29972.459Oreochromis_niloticus
ENSMUSG00000038510Rpf210091.941ENSOCUG00000016028RPF210091.176Oryctolagus_cuniculus
ENSMUSG00000038510Rpf210077.000ENSORLG00000015183rpf29971.475Oryzias_latipes
ENSMUSG00000038510Rpf210076.000ENSORLG00020008756rpf29669.360Oryzias_latipes_hni
ENSMUSG00000038510Rpf210077.000ENSORLG00015003841RPF29971.475Oryzias_latipes_hsok
ENSMUSG00000038510Rpf210076.000ENSOMEG00000011508rpf29972.549Oryzias_melastigma
ENSMUSG00000038510Rpf210092.308ENSOGAG00000007438RPF210092.157Otolemur_garnettii
ENSMUSG00000038510Rpf210092.674ENSOARG00000015548-10092.484Ovis_aries
ENSMUSG00000038510Rpf210092.674ENSOARG00000009886-10092.484Ovis_aries
ENSMUSG00000038510Rpf210084.906ENSPPAG00000032089-9985.305Pan_paniscus
ENSMUSG00000038510Rpf210092.674ENSPPAG00000035622RPF210092.157Pan_paniscus
ENSMUSG00000038510Rpf210080.220ENSPPRG00000008363-9778.231Panthera_pardus
ENSMUSG00000038510Rpf210093.040ENSPPRG00000000320-10092.484Panthera_pardus
ENSMUSG00000038510Rpf210093.040ENSPTIG00000002060RPF210092.484Panthera_tigris_altaica
ENSMUSG00000038510Rpf210092.674ENSPTRG00000018503RPF210092.157Pan_troglodytes
ENSMUSG00000038510Rpf210092.674ENSPANG00000018834RPF210092.157Papio_anubis
ENSMUSG00000038510Rpf210075.194ENSPKIG00000019506rpf29475.958Paramormyrops_kingsleyae
ENSMUSG00000038510Rpf29982.736ENSPSIG00000014887RPF210082.736Pelodiscus_sinensis
ENSMUSG00000038510Rpf210096.887ENSPEMG00000011413Rpf210096.887Peromyscus_maniculatus_bairdii
ENSMUSG00000038510Rpf29788.514ENSPCIG00000028172RPF29887.213Phascolarctos_cinereus
ENSMUSG00000038510Rpf210080.198ENSPFOG00000003396rpf29974.013Poecilia_formosa
ENSMUSG00000038510Rpf210079.208ENSPLAG00000001226rpf29973.355Poecilia_latipinna
ENSMUSG00000038510Rpf210080.198ENSPMEG00000007781rpf29974.013Poecilia_mexicana
ENSMUSG00000038510Rpf210078.218ENSPREG00000020525rpf29973.026Poecilia_reticulata
ENSMUSG00000038510Rpf210092.674ENSPPYG00000016925RPF210092.157Pongo_abelii
ENSMUSG00000038510Rpf27194.359ENSPCAG00000002562RPF27994.359Procavia_capensis
ENSMUSG00000038510Rpf29779.377ENSPCOG00000012785RPF29975.817Propithecus_coquereli
ENSMUSG00000038510Rpf28993.443ENSPVAG00000003446RPF28393.281Pteropus_vampyrus
ENSMUSG00000038510Rpf29870.588ENSPNAG00000000082rpf29672.449Pygocentrus_nattereri
ENSMUSG00000038510Rpf210097.802ENSRNOG00000000587Rpf210097.712Rattus_norvegicus
ENSMUSG00000038510Rpf210090.566ENSRBIG00000038389RPF210090.303Rhinopithecus_bieti
ENSMUSG00000038510Rpf210091.575ENSRROG00000036457RPF210091.176Rhinopithecus_roxellana
ENSMUSG00000038510Rpf29579.693ENSRROG00000028992-8779.693Rhinopithecus_roxellana
ENSMUSG00000038510Rpf210088.000ENSRROG00000039510-9982.593Rhinopithecus_roxellana
ENSMUSG00000038510Rpf210087.736ENSRROG00000036685-9588.755Rhinopithecus_roxellana
ENSMUSG00000038510Rpf29840.345YKR081C-8544.558Saccharomyces_cerevisiae
ENSMUSG00000038510Rpf29670.866ENSSBOG00000034420-10066.667Saimiri_boliviensis_boliviensis
ENSMUSG00000038510Rpf28171.255ENSSBOG00000029182-9571.255Saimiri_boliviensis_boliviensis
ENSMUSG00000038510Rpf27880.000ENSSBOG00000030264-9271.200Saimiri_boliviensis_boliviensis
ENSMUSG00000038510Rpf29773.485ENSSBOG00000025434-9973.401Saimiri_boliviensis_boliviensis
ENSMUSG00000038510Rpf29979.926ENSSBOG00000022486-9279.926Saimiri_boliviensis_boliviensis
ENSMUSG00000038510Rpf25290.780ENSSBOG00000003975-9490.780Saimiri_boliviensis_boliviensis
ENSMUSG00000038510Rpf29987.500ENSSHAG00000002212RPF29986.557Sarcophilus_harrisii
ENSMUSG00000038510Rpf210071.698ENSSFOG00015020916rpf29970.724Scleropages_formosus
ENSMUSG00000038510Rpf210076.238ENSSMAG00000017499rpf29971.803Scophthalmus_maximus
ENSMUSG00000038510Rpf29977.228ENSSDUG00000010383rpf29869.256Seriola_dumerili
ENSMUSG00000038510Rpf210077.228ENSSLDG00000022111rpf29972.787Seriola_lalandi_dorsalis
ENSMUSG00000038510Rpf28389.552ENSSARG00000012063RPF210067.647Sorex_araneus
ENSMUSG00000038510Rpf29879.245ENSSPUG00000005108RPF29779.402Sphenodon_punctatus
ENSMUSG00000038510Rpf210079.000ENSSPAG00000008035rpf29974.098Stegastes_partitus
ENSMUSG00000038510Rpf210092.607ENSSSCG00000004394RPF210091.830Sus_scrofa
ENSMUSG00000038510Rpf210082.075ENSTGUG00000012034RPF29684.746Taeniopygia_guttata
ENSMUSG00000038510Rpf210078.218ENSTRUG00000018264rpf29672.973Takifugu_rubripes
ENSMUSG00000038510Rpf29671.483ENSTNIG00000002749rpf29471.528Tetraodon_nigroviridis
ENSMUSG00000038510Rpf29385.039ENSTBEG00000017151RPF28385.039Tupaia_belangeri
ENSMUSG00000038510Rpf210092.674ENSTTRG00000012357RPF210092.484Tursiops_truncatus
ENSMUSG00000038510Rpf210092.308ENSUAMG00000013497RPF210092.157Ursus_americanus
ENSMUSG00000038510Rpf210091.941ENSUMAG00000025488RPF210091.830Ursus_maritimus
ENSMUSG00000038510Rpf210091.941ENSVPAG00000009562RPF210091.830Vicugna_pacos
ENSMUSG00000038510Rpf210080.220ENSVVUG00000021231-10080.565Vulpes_vulpes
ENSMUSG00000038510Rpf210089.313ENSVVUG00000006593-10083.987Vulpes_vulpes
ENSMUSG00000038510Rpf210080.808ENSXETG00000021335rpf210077.922Xenopus_tropicalis
ENSMUSG00000038510Rpf210079.208ENSXCOG00000001590rpf29970.395Xiphophorus_couchianus
ENSMUSG00000038510Rpf210075.097ENSXMAG00000021706rpf29275.097Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000027ribosomal large subunit assembly21873635.IBAProcess
GO:0000463maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)21873635.IBAProcess
GO:0000470maturation of LSU-rRNA-IEAProcess
GO:0005634nucleus-ISOComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005730nucleolus-ISOComponent
GO:00080975S rRNA binding-ISOFunction
GO:0019843rRNA binding-IEAFunction
GO:0042254ribosome biogenesis-IEAProcess
GO:0042273ribosomal large subunit biogenesis-ISOProcess
GO:1901796regulation of signal transduction by p53 class mediator-ISOProcess
GO:1902570protein localization to nucleolus-ISOProcess

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