EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038762 (Gene tree)
Gene ID: 224742
Gene Symbol: Abcf1
Alias: Abc50|D17Wsu166e|GCN20
Full Name: ATP-binding cassette%2C sub-family F (GCN20)%2C member 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 12943
Position: chr17: 35956819-35969761
Accession: 1351658
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000174128	-	376	-	ENSMUSP00000134716	43 (aa)	-	G3V012
ENSMUST00000172661	-	516	-	ENSMUSP00000134092	48 (aa)	-	G3UYI0
ENSMUST00000087205	-	724	-	-	- (aa)	-	-
ENSMUST00000174834	-	787	-	-	- (aa)	-	-
ENSMUST00000173125	-	798	-	-	- (aa)	-	-
ENSMUST00000173111	-	855	-	-	- (aa)	-	-
ENSMUST00000173090	-	464	-	-	- (aa)	-	-
ENSMUST00000043757	-	3161	XM_006524122	ENSMUSP00000036881	837 (aa)	XP_006524185	Q6P542

Gene Model

Click here to download ENSMUSG00000038762's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038762's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038762	Abcf1	100	90.555	ENSG00000204574	ABCF1	99	96.975	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005840	ribosome	-	ISO	Component
GO:0006413	translational initiation	-	ISO	Process
GO:0008494	translation activator activity	-	ISO	Function
GO:0016887	ATPase activity	-	IEA	Function
GO:0042788	polysomal ribosome	-	ISO	Component
GO:0043022	ribosome binding	-	ISO	Function
GO:0045727	positive regulation of translation	-	ISO	Process