EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038774 (Gene tree)
Gene ID: 77987
Gene Symbol: Ascc3
Alias: ASC1p200|B630009I04Rik|Helic1
Full Name: activating signal cointegrator 1 complex subunit 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 258817 bases
Position: chr10:50592669-50851485
Accession: 1925237
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000036726	ResIII	PF04851.15	2.9e-26	1	2
ENSMUSP00000036726	ResIII	PF04851.15	2.9e-26	2	2
ENSMUSP00000036726	DEAD	PF00270.29	3.5e-53	1	2
ENSMUSP00000036726	DEAD	PF00270.29	3.5e-53	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000220355	-	1250	-	ENSMUSP00000151273	334 (aa)	-	A0A1W2P6I6
ENSMUST00000220178	-	1673	-	-	- (aa)	-	-
ENSMUST00000217968	-	1730	-	-	- (aa)	-	-
ENSMUST00000219172	-	529	-	-	- (aa)	-	-
ENSMUST00000219226	-	1357	-	ENSMUSP00000151983	48 (aa)	-	A0A1W2P891
ENSMUST00000219085	-	5506	-	-	- (aa)	-	-
ENSMUST00000035606	-	7760	XM_006512923	ENSMUSP00000036726	2198 (aa)	XP_006512986	E9PZJ8
ENSMUST00000217725	-	783	-	-	- (aa)	-	-
ENSMUST00000220026	-	697	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000038774's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038774's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000038774	Ascc3	81	44.301	ENSMUSG00000003660	Snrnp200	86	42.051
ENSMUSG00000038774	Ascc3	62	35.940	ENSMUSG00000043410	Hfm1	51	35.940

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038774	Ascc3	100	92.144	ENSG00000112249	ASCC3	99	92.144	Homo_sapiens
ENSMUSG00000038774	Ascc3	100	90.282	ENSAMEG00000014749	ASCC3	99	90.282	Ailuropoda_melanoleuca
ENSMUSG00000038774	Ascc3	97	70.400	ENSACIG00000004551	ascc3	99	70.353	Amphilophus_citrinellus
ENSMUSG00000038774	Ascc3	100	72.616	ENSAOCG00000005106	ascc3	99	72.975	Amphiprion_ocellaris
ENSMUSG00000038774	Ascc3	96	73.602	ENSAPEG00000006181	ascc3	99	73.602	Amphiprion_percula
ENSMUSG00000038774	Ascc3	100	71.577	ENSATEG00000024950	ascc3	99	71.577	Anabas_testudineus
ENSMUSG00000038774	Ascc3	88	84.396	ENSAPLG00000012589	-	99	84.396	Anas_platyrhynchos
ENSMUSG00000038774	Ascc3	100	79.910	ENSACAG00000010080	ASCC3	99	79.910	Anolis_carolinensis
ENSMUSG00000038774	Ascc3	100	91.962	ENSANAG00000021476	ASCC3	99	91.962	Aotus_nancymaae
ENSMUSG00000038774	Ascc3	86	76.399	ENSACLG00000006736	ascc3	97	76.399	Astatotilapia_calliptera
ENSMUSG00000038774	Ascc3	99	70.588	ENSAMXG00000001395	ascc3	99	70.679	Astyanax_mexicanus
ENSMUSG00000038774	Ascc3	100	89.687	ENSBTAG00000020482	ASCC3	99	89.687	Bos_taurus
ENSMUSG00000038774	Ascc3	88	47.100	WBGene00013189	Y54E2A.4	99	45.052	Caenorhabditis_elegans
ENSMUSG00000038774	Ascc3	100	91.776	ENSCJAG00000001507	ASCC3	100	93.193	Callithrix_jacchus
ENSMUSG00000038774	Ascc3	100	90.100	ENSCAFG00000003554	ASCC3	99	90.100	Canis_familiaris
ENSMUSG00000038774	Ascc3	100	90.100	ENSCAFG00020016899	ASCC3	99	90.100	Canis_lupus_dingo
ENSMUSG00000038774	Ascc3	100	89.732	ENSCHIG00000023605	ASCC3	99	89.732	Capra_hircus
ENSMUSG00000038774	Ascc3	89	93.139	ENSTSYG00000006324	ASCC3	100	93.139	Carlito_syrichta
ENSMUSG00000038774	Ascc3	92	88.466	ENSCAPG00000010888	ASCC3	99	88.288	Cavia_aperea
ENSMUSG00000038774	Ascc3	100	91.496	ENSCPOG00000013989	ASCC3	100	91.496	Cavia_porcellus
ENSMUSG00000038774	Ascc3	100	92.098	ENSCCAG00000024230	ASCC3	99	92.098	Cebus_capucinus
ENSMUSG00000038774	Ascc3	100	92.507	ENSCATG00000011281	ASCC3	99	92.507	Cercocebus_atys
ENSMUSG00000038774	Ascc3	100	92.734	ENSCLAG00000009794	ASCC3	99	92.734	Chinchilla_lanigera
ENSMUSG00000038774	Ascc3	100	92.325	ENSCSAG00000014674	ASCC3	99	92.325	Chlorocebus_sabaeus
ENSMUSG00000038774	Ascc3	93	84.053	ENSCHOG00000002063	ASCC3	85	84.053	Choloepus_hoffmanni
ENSMUSG00000038774	Ascc3	100	81.941	ENSCPBG00000003881	ASCC3	99	81.896	Chrysemys_picta_bellii
ENSMUSG00000038774	Ascc3	81	60.402	ENSCSAVG00000007670	-	100	68.310	Ciona_savignyi
ENSMUSG00000038774	Ascc3	100	92.371	ENSCANG00000004215	ASCC3	99	92.371	Colobus_angolensis_palliatus
ENSMUSG00000038774	Ascc3	100	94.904	ENSCGRG00001000918	Ascc3	100	94.904	Cricetulus_griseus_chok1gshd
ENSMUSG00000038774	Ascc3	100	94.823	ENSCGRG00000012933	Ascc3	100	94.823	Cricetulus_griseus_crigri
ENSMUSG00000038774	Ascc3	99	72.033	ENSCSEG00000012811	ascc3	99	71.713	Cynoglossus_semilaevis
ENSMUSG00000038774	Ascc3	99	70.903	ENSCVAG00000013014	ascc3	99	70.949	Cyprinodon_variegatus
ENSMUSG00000038774	Ascc3	92	72.250	ENSDARG00000086678	ascc3	100	86.195	Danio_rerio
ENSMUSG00000038774	Ascc3	80	95.215	ENSDNOG00000010279	ASCC3	99	95.215	Dasypus_novemcinctus
ENSMUSG00000038774	Ascc3	100	92.825	ENSDORG00000008572	Ascc3	99	92.825	Dipodomys_ordii
ENSMUSG00000038774	Ascc3	90	53.550	FBgn0038344	obe	91	53.550	Drosophila_melanogaster
ENSMUSG00000038774	Ascc3	82	98.046	ENSETEG00000010694	-	72	98.046	Echinops_telfairi
ENSMUSG00000038774	Ascc3	55	79.079	ENSEBUG00000007355	-	99	79.079	Eptatretus_burgeri
ENSMUSG00000038774	Ascc3	100	90.100	ENSEASG00005006324	ASCC3	99	90.100	Equus_asinus_asinus
ENSMUSG00000038774	Ascc3	100	90.145	ENSECAG00000012013	ASCC3	99	90.145	Equus_caballus
ENSMUSG00000038774	Ascc3	87	81.615	ENSEEUG00000009748	ASCC3	99	81.615	Erinaceus_europaeus
ENSMUSG00000038774	Ascc3	99	76.408	ENSELUG00000023441	ascc3	99	76.408	Esox_lucius
ENSMUSG00000038774	Ascc3	100	90.645	ENSFCAG00000031266	ASCC3	99	90.645	Felis_catus
ENSMUSG00000038774	Ascc3	100	81.423	ENSFALG00000005260	ASCC3	99	81.423	Ficedula_albicollis
ENSMUSG00000038774	Ascc3	100	91.553	ENSFDAG00000011358	ASCC3	99	91.553	Fukomys_damarensis
ENSMUSG00000038774	Ascc3	99	71.991	ENSFHEG00000019247	ascc3	99	78.795	Fundulus_heteroclitus
ENSMUSG00000038774	Ascc3	98	70.179	ENSGMOG00000018158	ascc3	99	70.041	Gadus_morhua
ENSMUSG00000038774	Ascc3	99	81.624	ENSGALG00000015465	ASCC3	99	81.624	Gallus_gallus
ENSMUSG00000038774	Ascc3	100	71.338	ENSGACG00000014141	ascc3	99	71.383	Gasterosteus_aculeatus
ENSMUSG00000038774	Ascc3	89	84.549	ENSGAGG00000020794	ASCC3	99	84.549	Gopherus_agassizii
ENSMUSG00000038774	Ascc3	100	92.098	ENSGGOG00000002790	ASCC3	99	92.098	Gorilla_gorilla
ENSMUSG00000038774	Ascc3	90	72.564	ENSHBUG00000015110	ascc3	98	72.628	Haplochromis_burtoni
ENSMUSG00000038774	Ascc3	100	92.007	ENSHGLG00000002093	ASCC3	99	92.007	Heterocephalus_glaber_female
ENSMUSG00000038774	Ascc3	100	90.159	ENSHGLG00100005896	ASCC3	100	90.159	Heterocephalus_glaber_male
ENSMUSG00000038774	Ascc3	99	71.642	ENSHCOG00000021142	ascc3	100	71.642	Hippocampus_comes
ENSMUSG00000038774	Ascc3	99	72.937	ENSIPUG00000013863	ascc3	99	72.983	Ictalurus_punctatus
ENSMUSG00000038774	Ascc3	100	90.946	ENSSTOG00000006645	ASCC3	100	90.946	Ictidomys_tridecemlineatus
ENSMUSG00000038774	Ascc3	100	91.054	ENSJJAG00000022570	Ascc3	99	91.054	Jaculus_jaculus
ENSMUSG00000038774	Ascc3	100	72.288	ENSKMAG00000003953	ascc3	99	72.333	Kryptolebias_marmoratus
ENSMUSG00000038774	Ascc3	85	76.783	ENSLBEG00000009623	ascc3	99	76.890	Labrus_bergylta
ENSMUSG00000038774	Ascc3	75	81.456	ENSLACG00000015253	ascc3	100	81.456	Latimeria_chalumnae
ENSMUSG00000038774	Ascc3	100	76.590	ENSLOCG00000016550	ascc3	99	76.590	Lepisosteus_oculatus
ENSMUSG00000038774	Ascc3	89	78.633	ENSLAFG00000011363	ASCC3	100	78.633	Loxodonta_africana
ENSMUSG00000038774	Ascc3	100	92.371	ENSMFAG00000002081	ASCC3	99	92.371	Macaca_fascicularis
ENSMUSG00000038774	Ascc3	100	92.416	ENSMMUG00000022287	ASCC3	99	92.416	Macaca_mulatta
ENSMUSG00000038774	Ascc3	100	92.325	ENSMNEG00000032760	ASCC3	99	92.325	Macaca_nemestrina
ENSMUSG00000038774	Ascc3	100	91.218	ENSMLEG00000035241	ASCC3	99	91.218	Mandrillus_leucophaeus
ENSMUSG00000038774	Ascc3	100	72.288	ENSMAMG00000005917	ascc3	99	72.288	Mastacembelus_armatus
ENSMUSG00000038774	Ascc3	76	80.583	ENSMZEG00005002710	ascc3	73	80.647	Maylandia_zebra
ENSMUSG00000038774	Ascc3	99	80.598	ENSMGAG00000013551	ASCC3	99	80.598	Meleagris_gallopavo
ENSMUSG00000038774	Ascc3	100	94.641	ENSMAUG00000018304	Ascc3	100	94.641	Mesocricetus_auratus
ENSMUSG00000038774	Ascc3	100	93.006	ENSMICG00000008861	ASCC3	99	93.006	Microcebus_murinus
ENSMUSG00000038774	Ascc3	100	94.732	ENSMOCG00000004549	Ascc3	99	94.732	Microtus_ochrogaster
ENSMUSG00000038774	Ascc3	96	69.314	ENSMMOG00000003198	ascc3	99	69.296	Mola_mola
ENSMUSG00000038774	Ascc3	100	84.783	ENSMODG00000018082	ASCC3	99	84.783	Monodelphis_domestica
ENSMUSG00000038774	Ascc3	96	69.845	ENSMALG00000015536	ascc3	99	69.845	Monopterus_albus
ENSMUSG00000038774	Ascc3	100	98.955	MGP_CAROLIEiJ_G0015302	Ascc3	100	98.955	Mus_caroli
ENSMUSG00000038774	Ascc3	100	99.773	MGP_SPRETEiJ_G0016111	Ascc3	100	99.773	Mus_spretus
ENSMUSG00000038774	Ascc3	100	90.372	ENSMPUG00000001675	ASCC3	99	90.372	Mustela_putorius_furo
ENSMUSG00000038774	Ascc3	100	89.646	ENSMLUG00000002886	ASCC3	99	89.646	Myotis_lucifugus
ENSMUSG00000038774	Ascc3	100	93.233	ENSNGAG00000000702	Ascc3	99	93.233	Nannospalax_galili
ENSMUSG00000038774	Ascc3	84	66.086	ENSNBRG00000022083	ascc3	92	66.086	Neolamprologus_brichardi
ENSMUSG00000038774	Ascc3	100	92.144	ENSNLEG00000013890	ASCC3	99	92.144	Nomascus_leucogenys
ENSMUSG00000038774	Ascc3	97	97.368	ENSMEUG00000003061	ASCC3	83	97.368	Notamacropus_eugenii
ENSMUSG00000038774	Ascc3	88	98.667	ENSOPRG00000010249	-	79	98.667	Ochotona_princeps
ENSMUSG00000038774	Ascc3	100	92.144	ENSODEG00000000069	ASCC3	99	92.144	Octodon_degus
ENSMUSG00000038774	Ascc3	99	71.702	ENSONIG00000016540	ascc3	99	71.747	Oreochromis_niloticus
ENSMUSG00000038774	Ascc3	99	83.228	ENSOANG00000008944	ASCC3	99	83.228	Ornithorhynchus_anatinus
ENSMUSG00000038774	Ascc3	99	92.315	ENSOCUG00000002766	ASCC3	100	92.315	Oryctolagus_cuniculus
ENSMUSG00000038774	Ascc3	94	72.671	ENSORLG00000004221	ascc3	99	72.719	Oryzias_latipes
ENSMUSG00000038774	Ascc3	86	77.430	ENSORLG00020022595	ascc3	96	77.430	Oryzias_latipes_hni
ENSMUSG00000038774	Ascc3	94	72.671	ENSORLG00015009231	ascc3	99	72.719	Oryzias_latipes_hsok
ENSMUSG00000038774	Ascc3	99	70.994	ENSOMEG00000019630	ascc3	100	70.994	Oryzias_melastigma
ENSMUSG00000038774	Ascc3	89	90.938	ENSOGAG00000009875	ASCC3	100	90.938	Otolemur_garnettii
ENSMUSG00000038774	Ascc3	100	89.823	ENSOARG00000011627	ASCC3	99	89.823	Ovis_aries
ENSMUSG00000038774	Ascc3	100	92.189	ENSPPAG00000030772	ASCC3	99	92.189	Pan_paniscus
ENSMUSG00000038774	Ascc3	100	90.645	ENSPPRG00000011358	ASCC3	99	90.645	Panthera_pardus
ENSMUSG00000038774	Ascc3	100	90.372	ENSPTIG00000006331	ASCC3	99	90.372	Panthera_tigris_altaica
ENSMUSG00000038774	Ascc3	100	92.144	ENSPTRG00000018448	ASCC3	99	92.144	Pan_troglodytes
ENSMUSG00000038774	Ascc3	100	92.416	ENSPANG00000006307	ASCC3	99	92.416	Papio_anubis
ENSMUSG00000038774	Ascc3	100	73.162	ENSPKIG00000013639	ascc3	100	73.219	Paramormyrops_kingsleyae
ENSMUSG00000038774	Ascc3	78	84.545	ENSPSIG00000002620	-	96	84.545	Pelodiscus_sinensis
ENSMUSG00000038774	Ascc3	100	95.322	ENSPEMG00000015319	Ascc3	100	95.322	Peromyscus_maniculatus_bairdii
ENSMUSG00000038774	Ascc3	68	78.841	ENSPMAG00000002163	-	100	78.841	Petromyzon_marinus
ENSMUSG00000038774	Ascc3	100	85.190	ENSPCIG00000017288	ASCC3	99	85.562	Phascolarctos_cinereus
ENSMUSG00000038774	Ascc3	88	74.781	ENSPFOG00000001462	ascc3	98	74.832	Poecilia_formosa
ENSMUSG00000038774	Ascc3	99	72.545	ENSPREG00000017616	ascc3	99	72.603	Poecilia_reticulata
ENSMUSG00000038774	Ascc3	99	90.996	ENSPPYG00000016869	ASCC3	99	90.996	Pongo_abelii
ENSMUSG00000038774	Ascc3	100	79.146	ENSPCAG00000008834	ASCC3	99	79.146	Procavia_capensis
ENSMUSG00000038774	Ascc3	100	83.152	ENSPVAG00000012827	ASCC3	99	83.152	Pteropus_vampyrus
ENSMUSG00000038774	Ascc3	86	76.346	ENSPNYG00000018913	ascc3	97	76.346	Pundamilia_nyererei
ENSMUSG00000038774	Ascc3	86	78.496	ENSPNAG00000016413	ascc3	97	78.496	Pygocentrus_nattereri
ENSMUSG00000038774	Ascc3	99	96.638	ENSRNOG00000037604	Ascc3	100	96.638	Rattus_norvegicus
ENSMUSG00000038774	Ascc3	100	92.416	ENSRROG00000045402	ASCC3	99	92.416	Rhinopithecus_roxellana
ENSMUSG00000038774	Ascc3	82	44.704	YGR271W	-	90	44.704	Saccharomyces_cerevisiae
ENSMUSG00000038774	Ascc3	100	92.189	ENSSBOG00000025142	ASCC3	99	92.189	Saimiri_boliviensis_boliviensis
ENSMUSG00000038774	Ascc3	100	84.730	ENSSHAG00000016496	ASCC3	99	84.730	Sarcophilus_harrisii
ENSMUSG00000038774	Ascc3	99	73.388	ENSSFOG00015010273	ascc3	99	73.627	Scleropages_formosus
ENSMUSG00000038774	Ascc3	100	71.771	ENSSMAG00000012927	ascc3	99	71.816	Scophthalmus_maximus
ENSMUSG00000038774	Ascc3	100	71.946	ENSSDUG00000010897	ascc3	99	71.946	Seriola_dumerili
ENSMUSG00000038774	Ascc3	100	71.888	ENSSLDG00000021782	ascc3	99	71.888	Seriola_lalandi_dorsalis
ENSMUSG00000038774	Ascc3	99	85.683	ENSSARG00000001858	ASCC3	92	85.683	Sorex_araneus
ENSMUSG00000038774	Ascc3	100	81.547	ENSSPUG00000001842	ASCC3	99	81.547	Sphenodon_punctatus
ENSMUSG00000038774	Ascc3	99	72.501	ENSSPAG00000007677	ascc3	99	72.501	Stegastes_partitus
ENSMUSG00000038774	Ascc3	100	90.009	ENSSSCG00000004358	ASCC3	99	90.818	Sus_scrofa
ENSMUSG00000038774	Ascc3	90	83.384	ENSTGUG00000012262	ASCC3	99	83.384	Taeniopygia_guttata
ENSMUSG00000038774	Ascc3	98	66.835	ENSTNIG00000005079	ascc3	100	66.897	Tetraodon_nigroviridis
ENSMUSG00000038774	Ascc3	91	95.522	ENSTBEG00000015236	ASCC3	86	95.522	Tupaia_belangeri
ENSMUSG00000038774	Ascc3	100	89.715	ENSTTRG00000008255	ASCC3	96	89.715	Tursiops_truncatus
ENSMUSG00000038774	Ascc3	68	95.522	ENSUAMG00000023340	-	99	94.252	Ursus_americanus
ENSMUSG00000038774	Ascc3	100	89.373	ENSUMAG00000021200	ASCC3	99	89.373	Ursus_maritimus
ENSMUSG00000038774	Ascc3	100	85.792	ENSVPAG00000001408	ASCC3	99	85.792	Vicugna_pacos
ENSMUSG00000038774	Ascc3	100	90.372	ENSVVUG00000015397	ASCC3	99	91.663	Vulpes_vulpes
ENSMUSG00000038774	Ascc3	79	80.893	ENSXETG00000032212	-	99	80.893	Xenopus_tropicalis
ENSMUSG00000038774	Ascc3	99	71.991	ENSXMAG00000000071	ascc3	100	72.049	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006307	DNA dealkylation involved in DNA repair	21873635.	IBA	Process
GO:0006307	DNA dealkylation involved in DNA repair	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0008026	ATP-dependent helicase activity	21873635.	IBA	Function
GO:0008283	cell proliferation	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0032508	DNA duplex unwinding	-	ISO	Process
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	21873635.	IBA	Function
GO:0043140	ATP-dependent 3'-5' DNA helicase activity	-	ISO	Function
GO:0099053	activating signal cointegrator 1 complex	-	ISO	Component