EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038784 (Gene tree)
Gene ID: 53621
Gene Symbol: Cnot4
Alias: Not4|Not4h|Not4hp
Full Name: CCR4-NOT transcription complex%2C subunit 4
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 111660 bases
Position: chr6:35022065-35133724
Accession: 1859026
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000144409	RRM_1	PF00076.22	1.9e-05	1	1
ENSMUSP00000044137	RRM_1	PF00076.22	1.9e-05	1	1
ENSMUSP00000144352	RRM_1	PF00076.22	2.3e-05	1	1
ENSMUSP00000110640	RRM_1	PF00076.22	2.3e-05	1	1
ENSMUSP00000110645	RRM_1	PF00076.22	2.7e-05	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000200743	-	3941	-	-	- (aa)	-	-
ENSMUST00000114993	-	3473	XM_011241407	ENSMUSP00000110645	710 (aa)	XP_011239709	A0A0R4J1K1
ENSMUST00000114989	-	3279	-	ENSMUSP00000110640	642 (aa)	-	E9QA19
ENSMUST00000044163	-	3337	-	ENSMUSP00000044137	575 (aa)	-	Q8BT14
ENSMUST00000202666	-	561	-	-	- (aa)	-	-
ENSMUST00000200954	-	2800	-	-	- (aa)	-	-
ENSMUST00000202143	-	3202	-	ENSMUSP00000144352	639 (aa)	-	Q05BG1
ENSMUST00000202417	-	3296	-	ENSMUSP00000144409	572 (aa)	-	Q8BT14

Gene Model

Click here to download ENSMUSG00000038784's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038784's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038784	Cnot4	100	98.783	ENSG00000080802	CNOT4	100	98.783	Homo_sapiens
ENSMUSG00000038784	Cnot4	93	90.566	ENSAPOG00000016272	cnot4a	95	77.677	Acanthochromis_polyacanthus
ENSMUSG00000038784	Cnot4	97	97.246	ENSAMEG00000012081	CNOT4	91	99.535	Ailuropoda_melanoleuca
ENSMUSG00000038784	Cnot4	100	62.727	ENSACIG00000003011	cnot4a	100	59.580	Amphilophus_citrinellus
ENSMUSG00000038784	Cnot4	99	90.566	ENSAOCG00000010792	cnot4a	91	90.566	Amphiprion_ocellaris
ENSMUSG00000038784	Cnot4	99	90.566	ENSAPEG00000004680	cnot4a	91	90.566	Amphiprion_percula
ENSMUSG00000038784	Cnot4	99	90.189	ENSATEG00000017580	cnot4a	91	90.189	Anabas_testudineus
ENSMUSG00000038784	Cnot4	100	87.664	ENSAPLG00000016441	CNOT4	100	87.664	Anas_platyrhynchos
ENSMUSG00000038784	Cnot4	100	87.795	ENSACAG00000011154	CNOT4	100	87.795	Anolis_carolinensis
ENSMUSG00000038784	Cnot4	100	98.951	ENSANAG00000032156	CNOT4	100	98.951	Aotus_nancymaae
ENSMUSG00000038784	Cnot4	99	90.566	ENSACLG00000002514	cnot4a	91	90.566	Astatotilapia_calliptera
ENSMUSG00000038784	Cnot4	100	92.620	ENSAMXG00000011473	cnot4b	100	71.196	Astyanax_mexicanus
ENSMUSG00000038784	Cnot4	100	73.089	ENSAMXG00000001373	cnot4a	100	72.171	Astyanax_mexicanus
ENSMUSG00000038784	Cnot4	100	98.957	ENSBTAG00000017919	CNOT4	100	98.957	Bos_taurus
ENSMUSG00000038784	Cnot4	100	98.951	ENSCJAG00000012532	CNOT4	100	98.951	Callithrix_jacchus
ENSMUSG00000038784	Cnot4	100	99.301	ENSCAFG00000003223	CNOT4	100	99.301	Canis_familiaris
ENSMUSG00000038784	Cnot4	100	99.301	ENSCAFG00020000093	CNOT4	100	99.301	Canis_lupus_dingo
ENSMUSG00000038784	Cnot4	100	99.126	ENSCHIG00000010955	CNOT4	100	99.126	Capra_hircus
ENSMUSG00000038784	Cnot4	100	99.126	ENSTSYG00000000893	CNOT4	100	99.126	Carlito_syrichta
ENSMUSG00000038784	Cnot4	100	94.930	ENSCAPG00000006213	CNOT4	100	94.930	Cavia_aperea
ENSMUSG00000038784	Cnot4	100	97.902	ENSCPOG00000011526	CNOT4	100	97.902	Cavia_porcellus
ENSMUSG00000038784	Cnot4	100	98.957	ENSCCAG00000024414	CNOT4	100	98.957	Cebus_capucinus
ENSMUSG00000038784	Cnot4	100	98.957	ENSCATG00000022607	CNOT4	100	98.957	Cercocebus_atys
ENSMUSG00000038784	Cnot4	100	98.427	ENSCLAG00000001857	CNOT4	100	98.427	Chinchilla_lanigera
ENSMUSG00000038784	Cnot4	100	98.310	ENSCSAG00000009096	CNOT4	100	98.310	Chlorocebus_sabaeus
ENSMUSG00000038784	Cnot4	68	99.465	ENSCHOG00000010412	CNOT4	63	99.465	Choloepus_hoffmanni
ENSMUSG00000038784	Cnot4	100	94.670	ENSCPBG00000004959	CNOT4	100	94.670	Chrysemys_picta_bellii
ENSMUSG00000038784	Cnot4	66	69.323	ENSCING00000004364	-	93	41.291	Ciona_intestinalis
ENSMUSG00000038784	Cnot4	100	98.776	ENSCANG00000029319	CNOT4	100	98.776	Colobus_angolensis_palliatus
ENSMUSG00000038784	Cnot4	100	99.826	ENSCGRG00001014651	Cnot4	100	99.826	Cricetulus_griseus_chok1gshd
ENSMUSG00000038784	Cnot4	100	99.825	ENSCGRG00000005727	Cnot4	100	99.825	Cricetulus_griseus_crigri
ENSMUSG00000038784	Cnot4	94	90.566	ENSCSEG00000015080	cnot4a	84	90.566	Cynoglossus_semilaevis
ENSMUSG00000038784	Cnot4	99	90.566	ENSCVAG00000009399	cnot4a	91	90.566	Cyprinodon_variegatus
ENSMUSG00000038784	Cnot4	100	66.831	ENSDARG00000007639	cnot4b	100	66.253	Danio_rerio
ENSMUSG00000038784	Cnot4	100	70.789	ENSDARG00000007045	cnot4a	100	70.284	Danio_rerio
ENSMUSG00000038784	Cnot4	100	96.914	ENSDNOG00000009409	CNOT4	100	96.914	Dasypus_novemcinctus
ENSMUSG00000038784	Cnot4	100	98.783	ENSDORG00000012268	Cnot4	100	98.783	Dipodomys_ordii
ENSMUSG00000038784	Cnot4	100	91.585	ENSETEG00000013407	CNOT4	89	94.048	Echinops_telfairi
ENSMUSG00000038784	Cnot4	100	98.783	ENSEASG00005014430	CNOT4	100	98.783	Equus_asinus_asinus
ENSMUSG00000038784	Cnot4	100	98.783	ENSECAG00000020262	CNOT4	100	98.783	Equus_caballus
ENSMUSG00000038784	Cnot4	100	73.887	ENSELUG00000011540	cnot4b	98	71.625	Esox_lucius
ENSMUSG00000038784	Cnot4	99	90.637	ENSELUG00000008742	cnot4a	90	90.637	Esox_lucius
ENSMUSG00000038784	Cnot4	100	99.301	ENSFCAG00000011904	CNOT4	100	99.301	Felis_catus
ENSMUSG00000038784	Cnot4	100	88.058	ENSFALG00000011194	CNOT4	100	88.058	Ficedula_albicollis
ENSMUSG00000038784	Cnot4	100	98.783	ENSFDAG00000013525	CNOT4	100	98.783	Fukomys_damarensis
ENSMUSG00000038784	Cnot4	100	89.259	ENSFHEG00000006608	cnot4a	100	72.382	Fundulus_heteroclitus
ENSMUSG00000038784	Cnot4	95	59.459	ENSGMOG00000001329	cnot4a	97	59.872	Gadus_morhua
ENSMUSG00000038784	Cnot4	100	93.969	ENSGALG00000011682	CNOT4	100	93.969	Gallus_gallus
ENSMUSG00000038784	Cnot4	99	90.189	ENSGACG00000004276	cnot4a	91	90.189	Gasterosteus_aculeatus
ENSMUSG00000038784	Cnot4	100	94.109	ENSGAGG00000017331	CNOT4	100	94.109	Gopherus_agassizii
ENSMUSG00000038784	Cnot4	92	97.949	ENSGGOG00000000142	CNOT4	99	98.069	Gorilla_gorilla
ENSMUSG00000038784	Cnot4	99	90.566	ENSHBUG00000000027	cnot4a	91	90.566	Haplochromis_burtoni
ENSMUSG00000038784	Cnot4	100	99.130	ENSHGLG00000011533	CNOT4	100	99.130	Heterocephalus_glaber_female
ENSMUSG00000038784	Cnot4	100	99.130	ENSHGLG00100013058	CNOT4	100	99.130	Heterocephalus_glaber_male
ENSMUSG00000038784	Cnot4	98	89.434	ENSHCOG00000015815	cnot4a	91	89.434	Hippocampus_comes
ENSMUSG00000038784	Cnot4	100	71.513	ENSIPUG00000016994	cnot4b	100	70.920	Ictalurus_punctatus
ENSMUSG00000038784	Cnot4	100	91.481	ENSIPUG00000006393	cnot4	91	91.481	Ictalurus_punctatus
ENSMUSG00000038784	Cnot4	100	99.126	ENSSTOG00000007717	CNOT4	100	99.126	Ictidomys_tridecemlineatus
ENSMUSG00000038784	Cnot4	100	98.776	ENSJJAG00000016618	Cnot4	100	98.776	Jaculus_jaculus
ENSMUSG00000038784	Cnot4	100	81.469	ENSJJAG00000019991	-	100	81.469	Jaculus_jaculus
ENSMUSG00000038784	Cnot4	94	90.566	ENSKMAG00000004581	cnot4a	100	72.977	Kryptolebias_marmoratus
ENSMUSG00000038784	Cnot4	99	90.943	ENSLBEG00000009999	cnot4a	91	90.943	Labrus_bergylta
ENSMUSG00000038784	Cnot4	100	83.405	ENSLACG00000002647	CNOT4	99	83.405	Latimeria_chalumnae
ENSMUSG00000038784	Cnot4	100	93.382	ENSLOCG00000016126	cnot4a	92	93.382	Lepisosteus_oculatus
ENSMUSG00000038784	Cnot4	100	96.634	ENSLAFG00000000709	CNOT4	100	96.634	Loxodonta_africana
ENSMUSG00000038784	Cnot4	100	98.951	ENSMFAG00000046349	CNOT4	100	98.951	Macaca_fascicularis
ENSMUSG00000038784	Cnot4	100	98.957	ENSMMUG00000016181	CNOT4	100	98.957	Macaca_mulatta
ENSMUSG00000038784	Cnot4	100	98.951	ENSMNEG00000042164	CNOT4	100	98.951	Macaca_nemestrina
ENSMUSG00000038784	Cnot4	100	98.951	ENSMLEG00000032709	CNOT4	100	98.951	Mandrillus_leucophaeus
ENSMUSG00000038784	Cnot4	99	90.566	ENSMAMG00000023194	cnot4a	91	90.566	Mastacembelus_armatus
ENSMUSG00000038784	Cnot4	99	90.566	ENSMZEG00005007312	cnot4a	91	90.566	Maylandia_zebra
ENSMUSG00000038784	Cnot4	100	87.533	ENSMGAG00000011788	CNOT4	100	87.533	Meleagris_gallopavo
ENSMUSG00000038784	Cnot4	100	99.478	ENSMAUG00000020415	Cnot4	100	99.478	Mesocricetus_auratus
ENSMUSG00000038784	Cnot4	100	99.304	ENSMICG00000001667	CNOT4	100	99.304	Microcebus_murinus
ENSMUSG00000038784	Cnot4	100	99.652	ENSMOCG00000020955	Cnot4	100	99.652	Microtus_ochrogaster
ENSMUSG00000038784	Cnot4	96	73.786	ENSMMOG00000014565	cnot4a	97	75.084	Mola_mola
ENSMUSG00000038784	Cnot4	100	96.479	ENSMODG00000014068	CNOT4	100	96.479	Monodelphis_domestica
ENSMUSG00000038784	Cnot4	93	90.566	ENSMALG00000011662	cnot4a	80	90.566	Monopterus_albus
ENSMUSG00000038784	Cnot4	100	99.579	MGP_CAROLIEiJ_G0028217	Cnot4	100	99.579	Mus_caroli
ENSMUSG00000038784	Cnot4	100	99.718	MGP_PahariEiJ_G0021974	Cnot4	100	99.718	Mus_pahari
ENSMUSG00000038784	Cnot4	100	99.859	MGP_SPRETEiJ_G0029216	Cnot4	100	99.859	Mus_spretus
ENSMUSG00000038784	Cnot4	100	98.310	ENSMPUG00000004089	CNOT4	100	98.310	Mustela_putorius_furo
ENSMUSG00000038784	Cnot4	100	98.598	ENSMLUG00000008260	CNOT4	100	98.598	Myotis_lucifugus
ENSMUSG00000038784	Cnot4	100	98.609	ENSNGAG00000015030	Cnot4	100	98.609	Nannospalax_galili
ENSMUSG00000038784	Cnot4	100	71.148	ENSNBRG00000021144	cnot4a	100	70.739	Neolamprologus_brichardi
ENSMUSG00000038784	Cnot4	100	98.435	ENSNLEG00000013352	CNOT4	100	98.435	Nomascus_leucogenys
ENSMUSG00000038784	Cnot4	88	95.970	ENSOPRG00000001023	CNOT4	82	95.970	Ochotona_princeps
ENSMUSG00000038784	Cnot4	100	98.087	ENSODEG00000012975	CNOT4	100	98.087	Octodon_degus
ENSMUSG00000038784	Cnot4	99	90.566	ENSONIG00000008656	cnot4a	91	90.566	Oreochromis_niloticus
ENSMUSG00000038784	Cnot4	100	94.944	ENSOANG00000005006	CNOT4	100	94.944	Ornithorhynchus_anatinus
ENSMUSG00000038784	Cnot4	100	98.169	ENSOCUG00000013448	CNOT4	100	98.169	Oryctolagus_cuniculus
ENSMUSG00000038784	Cnot4	100	73.160	ENSORLG00000003727	cnot4a	91	90.943	Oryzias_latipes
ENSMUSG00000038784	Cnot4	100	72.879	ENSORLG00020015684	cnot4a	91	91.321	Oryzias_latipes_hni
ENSMUSG00000038784	Cnot4	100	73.466	ENSORLG00015008470	cnot4a	91	91.321	Oryzias_latipes_hsok
ENSMUSG00000038784	Cnot4	100	72.393	ENSOMEG00000011084	cnot4a	91	90.943	Oryzias_melastigma
ENSMUSG00000038784	Cnot4	100	97.896	ENSOGAG00000015499	CNOT4	100	97.896	Otolemur_garnettii
ENSMUSG00000038784	Cnot4	100	97.335	ENSOARG00000008803	CNOT4	100	97.335	Ovis_aries
ENSMUSG00000038784	Cnot4	100	98.609	ENSPPAG00000041937	CNOT4	100	98.609	Pan_paniscus
ENSMUSG00000038784	Cnot4	100	99.304	ENSPPRG00000023940	CNOT4	100	99.304	Panthera_pardus
ENSMUSG00000038784	Cnot4	100	99.301	ENSPTIG00000016601	CNOT4	100	99.301	Panthera_tigris_altaica
ENSMUSG00000038784	Cnot4	100	98.609	ENSPTRG00000019727	CNOT4	100	98.609	Pan_troglodytes
ENSMUSG00000038784	Cnot4	100	98.783	ENSPANG00000017724	CNOT4	100	98.783	Papio_anubis
ENSMUSG00000038784	Cnot4	100	72.317	ENSPKIG00000018137	cnot4a	100	72.006	Paramormyrops_kingsleyae
ENSMUSG00000038784	Cnot4	100	86.370	ENSPSIG00000011256	CNOT4	100	87.025	Pelodiscus_sinensis
ENSMUSG00000038784	Cnot4	100	73.222	ENSPMGG00000005671	cnot4a	100	73.071	Periophthalmus_magnuspinnatus
ENSMUSG00000038784	Cnot4	100	99.652	ENSPEMG00000021566	Cnot4	100	99.652	Peromyscus_maniculatus_bairdii
ENSMUSG00000038784	Cnot4	100	96.244	ENSPCIG00000029622	CNOT4	96	96.056	Phascolarctos_cinereus
ENSMUSG00000038784	Cnot4	99	90.566	ENSPFOG00000002228	cnot4a	91	90.566	Poecilia_formosa
ENSMUSG00000038784	Cnot4	100	73.212	ENSPLAG00000001780	cnot4a	100	72.755	Poecilia_latipinna
ENSMUSG00000038784	Cnot4	99	90.566	ENSPMEG00000006852	cnot4a	91	90.566	Poecilia_mexicana
ENSMUSG00000038784	Cnot4	100	71.550	ENSPREG00000008171	cnot4a	100	69.880	Poecilia_reticulata
ENSMUSG00000038784	Cnot4	100	98.028	ENSPPYG00000018026	CNOT4	100	98.028	Pongo_abelii
ENSMUSG00000038784	Cnot4	100	99.301	ENSPCOG00000019907	CNOT4	100	99.301	Propithecus_coquereli
ENSMUSG00000038784	Cnot4	97	95.797	ENSPVAG00000004905	CNOT4	90	95.797	Pteropus_vampyrus
ENSMUSG00000038784	Cnot4	99	90.566	ENSPNYG00000004276	cnot4a	91	90.566	Pundamilia_nyererei
ENSMUSG00000038784	Cnot4	100	72.696	ENSPNAG00000020433	cnot4a	100	71.721	Pygocentrus_nattereri
ENSMUSG00000038784	Cnot4	100	93.727	ENSPNAG00000008679	cnot4b	100	74.738	Pygocentrus_nattereri
ENSMUSG00000038784	Cnot4	100	99.014	ENSRNOG00000010795	Cnot4	100	99.014	Rattus_norvegicus
ENSMUSG00000038784	Cnot4	100	98.957	ENSRBIG00000043977	CNOT4	100	98.957	Rhinopithecus_bieti
ENSMUSG00000038784	Cnot4	100	98.776	ENSSBOG00000020808	CNOT4	100	98.776	Saimiri_boliviensis_boliviensis
ENSMUSG00000038784	Cnot4	100	96.338	ENSSHAG00000013639	CNOT4	100	96.338	Sarcophilus_harrisii
ENSMUSG00000038784	Cnot4	100	91.912	ENSSFOG00015017285	CNOT4	92	91.912	Scleropages_formosus
ENSMUSG00000038784	Cnot4	100	90.074	ENSSFOG00015002019	cnot4a	91	90.074	Scleropages_formosus
ENSMUSG00000038784	Cnot4	99	90.566	ENSSMAG00000008614	cnot4a	91	90.566	Scophthalmus_maximus
ENSMUSG00000038784	Cnot4	99	90.566	ENSSDUG00000022635	cnot4a	91	90.566	Seriola_dumerili
ENSMUSG00000038784	Cnot4	100	71.451	ENSSDUG00000018585	cnot4b	100	71.275	Seriola_dumerili
ENSMUSG00000038784	Cnot4	99	90.566	ENSSLDG00000015770	cnot4a	91	90.566	Seriola_lalandi_dorsalis
ENSMUSG00000038784	Cnot4	100	61.765	ENSSLDG00000014347	cnot4b	95	66.007	Seriola_lalandi_dorsalis
ENSMUSG00000038784	Cnot4	100	95.016	ENSSPUG00000004677	CNOT4	100	95.016	Sphenodon_punctatus
ENSMUSG00000038784	Cnot4	99	90.566	ENSSPAG00000012329	cnot4a	91	90.566	Stegastes_partitus
ENSMUSG00000038784	Cnot4	100	99.478	ENSSSCG00000021354	CNOT4	100	99.478	Sus_scrofa
ENSMUSG00000038784	Cnot4	100	88.189	ENSTGUG00000009161	CNOT4	100	88.189	Taeniopygia_guttata
ENSMUSG00000038784	Cnot4	100	89.259	ENSTRUG00000016861	cnot4a	92	89.259	Takifugu_rubripes
ENSMUSG00000038784	Cnot4	100	69.521	ENSTNIG00000016000	cnot4a	100	69.648	Tetraodon_nigroviridis
ENSMUSG00000038784	Cnot4	94	97.232	ENSTBEG00000002202	CNOT4	86	92.857	Tupaia_belangeri
ENSMUSG00000038784	Cnot4	97	96.961	ENSTTRG00000005122	CNOT4	90	96.961	Tursiops_truncatus
ENSMUSG00000038784	Cnot4	100	99.304	ENSUAMG00000026759	CNOT4	100	99.304	Ursus_americanus
ENSMUSG00000038784	Cnot4	100	99.304	ENSUMAG00000015351	CNOT4	100	99.304	Ursus_maritimus
ENSMUSG00000038784	Cnot4	100	99.304	ENSVVUG00000006200	CNOT4	100	99.304	Vulpes_vulpes
ENSMUSG00000038784	Cnot4	100	98.519	ENSXETG00000010594	cnot4	92	98.519	Xenopus_tropicalis
ENSMUSG00000038784	Cnot4	94	72.600	ENSXCOG00000020824	cnot4a	98	71.210	Xiphophorus_couchianus
ENSMUSG00000038784	Cnot4	99	90.566	ENSXMAG00000016984	cnot4a	91	90.566	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004842	ubiquitin-protein transferase activity	21873635.	IBA	Function
GO:0004842	ubiquitin-protein transferase activity	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006511	ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0016567	protein ubiquitination	21873635.	IBA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0030014	CCR4-NOT complex	21873635.	IBA	Component
GO:0030014	CCR4-NOT complex	-	ISO	Component
GO:0045652	regulation of megakaryocyte differentiation	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051865	protein autoubiquitination	-	ISO	Process