EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038838 (Gene tree)
Gene ID: 68915
Gene Symbol: Vars2
Alias: 1190004I24Rik|Vars2l
Full Name: valyl-tRNA synthetase 2%2C mitochondrial
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 11959 bases
Position: chr17:35655634-35667592
Accession: 1916165
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000047917	tRNA-synt_1g	PF09334.11	1.7e-14	1	1
ENSMUSP00000047917	Anticodon_1	PF08264.13	2.8e-30	1	1
ENSMUSP00000047917	tRNA-synt_1	PF00133.22	1.5e-181	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000174129	-	319	-	-	- (aa)	-	-
ENSMUST00000164978	-	618	-	-	- (aa)	-	-
ENSMUST00000168922	-	2507	-	ENSMUSP00000129196	581 (aa)	-	F6YJY2
ENSMUST00000165787	-	3803	-	-	- (aa)	-	-
ENSMUST00000171536	-	786	-	-	- (aa)	-	-
ENSMUST00000170701	-	603	-	-	- (aa)	-	-
ENSMUST00000164404	-	1972	-	ENSMUSP00000126084	215 (aa)	-	F7A8L1
ENSMUST00000169093	-	832	-	ENSMUSP00000126794	112 (aa)	-	F6Z939
ENSMUST00000165144	-	718	-	ENSMUSP00000132897	75 (aa)	-	E9PWQ5
ENSMUST00000043674	-	4425	XM_011246589	ENSMUSP00000047917	1060 (aa)	XP_011244891	Q3U2A8
ENSMUST00000164295	-	722	-	-	- (aa)	-	-
ENSMUST00000168885	-	708	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000038838's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038838's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000038838	Vars2	92	52.477	ENSMUSG00000007029	Vars	82	50.096

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038838	Vars2	88	64.286	ENSAPOG00000007396	vars2	97	51.464	Acanthochromis_polyacanthus
ENSMUSG00000038838	Vars2	100	81.827	ENSAMEG00000012997	VARS2	97	81.827	Ailuropoda_melanoleuca
ENSMUSG00000038838	Vars2	96	55.300	ENSACIG00000004344	vars2	99	51.176	Amphilophus_citrinellus
ENSMUSG00000038838	Vars2	96	55.268	ENSAOCG00000000476	vars2	97	50.847	Amphiprion_ocellaris
ENSMUSG00000038838	Vars2	96	55.095	ENSAPEG00000008646	vars2	95	50.847	Amphiprion_percula
ENSMUSG00000038838	Vars2	96	55.810	ENSATEG00000012291	vars2	97	51.727	Anabas_testudineus
ENSMUSG00000038838	Vars2	97	60.139	ENSACAG00000022093	VARS2	98	58.022	Anolis_carolinensis
ENSMUSG00000038838	Vars2	99	83.176	ENSANAG00000038018	VARS2	99	83.176	Aotus_nancymaae
ENSMUSG00000038838	Vars2	96	54.340	ENSACLG00000018673	vars2	99	50.745	Astatotilapia_calliptera
ENSMUSG00000038838	Vars2	93	58.123	ENSAMXG00000017773	vars2	98	51.670	Astyanax_mexicanus
ENSMUSG00000038838	Vars2	99	84.455	ENSBTAG00000010698	VARS2	99	84.405	Bos_taurus
ENSMUSG00000038838	Vars2	100	83.145	ENSCJAG00000019826	VARS2	99	83.145	Callithrix_jacchus
ENSMUSG00000038838	Vars2	100	81.168	ENSCAFG00000000454	VARS2	100	81.168	Canis_familiaris
ENSMUSG00000038838	Vars2	93	84.288	ENSCAFG00020019387	VARS2	95	83.208	Canis_lupus_dingo
ENSMUSG00000038838	Vars2	99	84.725	ENSCHIG00000007847	VARS2	99	84.594	Capra_hircus
ENSMUSG00000038838	Vars2	99	83.664	ENSTSYG00000009904	VARS2	99	83.664	Carlito_syrichta
ENSMUSG00000038838	Vars2	93	82.994	ENSCAPG00000017770	VARS2	99	82.131	Cavia_aperea
ENSMUSG00000038838	Vars2	99	81.698	ENSCPOG00000021834	VARS2	99	81.698	Cavia_porcellus
ENSMUSG00000038838	Vars2	99	83.868	ENSCCAG00000037907	VARS2	99	83.868	Cebus_capucinus
ENSMUSG00000038838	Vars2	99	84.121	ENSCATG00000032554	VARS2	99	84.121	Cercocebus_atys
ENSMUSG00000038838	Vars2	99	81.262	ENSCLAG00000002889	VARS2	99	81.262	Chinchilla_lanigera
ENSMUSG00000038838	Vars2	99	83.932	ENSCSAG00000008327	VARS2	99	83.932	Chlorocebus_sabaeus
ENSMUSG00000038838	Vars2	96	62.167	ENSCPBG00000021502	VARS2	96	61.934	Chrysemys_picta_bellii
ENSMUSG00000038838	Vars2	99	83.932	ENSCANG00000014991	VARS2	99	83.932	Colobus_angolensis_palliatus
ENSMUSG00000038838	Vars2	99	90.353	ENSCGRG00001021535	Vars2	100	90.189	Cricetulus_griseus_chok1gshd
ENSMUSG00000038838	Vars2	99	90.353	ENSCGRG00000014112	Vars2	100	90.189	Cricetulus_griseus_crigri
ENSMUSG00000038838	Vars2	81	57.210	ENSCSEG00000015432	vars2	90	57.210	Cynoglossus_semilaevis
ENSMUSG00000038838	Vars2	93	56.498	ENSCVAG00000017765	vars2	94	53.756	Cyprinodon_variegatus
ENSMUSG00000038838	Vars2	88	65.306	ENSDARG00000056717	vars2	97	52.111	Danio_rerio
ENSMUSG00000038838	Vars2	93	86.397	ENSDORG00000008516	Vars2	93	84.780	Dipodomys_ordii
ENSMUSG00000038838	Vars2	99	72.443	ENSETEG00000014844	VARS2	99	72.443	Echinops_telfairi
ENSMUSG00000038838	Vars2	84	57.447	ENSEBUG00000010396	-	94	56.637	Eptatretus_burgeri
ENSMUSG00000038838	Vars2	99	83.789	ENSEASG00005019997	VARS2	97	83.789	Equus_asinus_asinus
ENSMUSG00000038838	Vars2	99	85.014	ENSECAG00000018202	VARS2	99	85.014	Equus_caballus
ENSMUSG00000038838	Vars2	67	80.583	ENSEEUG00000012591	-	63	80.583	Erinaceus_europaeus
ENSMUSG00000038838	Vars2	93	55.477	ENSELUG00000017824	vars2	97	51.692	Esox_lucius
ENSMUSG00000038838	Vars2	100	82.768	ENSFCAG00000010531	VARS2	100	82.768	Felis_catus
ENSMUSG00000038838	Vars2	99	82.109	ENSFDAG00000017216	VARS2	99	82.109	Fukomys_damarensis
ENSMUSG00000038838	Vars2	93	52.764	ENSFHEG00000013932	vars2	93	50.939	Fundulus_heteroclitus
ENSMUSG00000038838	Vars2	98	54.912	ENSGMOG00000018960	vars2	99	55.521	Gadus_morhua
ENSMUSG00000038838	Vars2	93	55.655	ENSGAFG00000004737	vars2	89	50.627	Gambusia_affinis
ENSMUSG00000038838	Vars2	96	56.506	ENSGACG00000001464	vars2	99	53.604	Gasterosteus_aculeatus
ENSMUSG00000038838	Vars2	96	63.251	ENSGAGG00000011652	VARS2	99	60.870	Gopherus_agassizii
ENSMUSG00000038838	Vars2	99	83.932	ENSGGOG00000014587	VARS2	99	83.932	Gorilla_gorilla
ENSMUSG00000038838	Vars2	96	53.565	ENSHBUG00000002448	vars2	100	48.646	Haplochromis_burtoni
ENSMUSG00000038838	Vars2	99	81.450	ENSHGLG00000012886	VARS2	96	81.450	Heterocephalus_glaber_female
ENSMUSG00000038838	Vars2	99	81.262	ENSHGLG00100016535	VARS2	99	81.262	Heterocephalus_glaber_male
ENSMUSG00000038838	Vars2	98	55.363	ENSHCOG00000017907	vars2	94	52.468	Hippocampus_comes
ENSMUSG00000038838	Vars2	93	58.394	ENSIPUG00000015573	Vars2	98	52.394	Ictalurus_punctatus
ENSMUSG00000038838	Vars2	99	85.660	ENSSTOG00000009924	VARS2	99	85.660	Ictidomys_tridecemlineatus
ENSMUSG00000038838	Vars2	99	83.097	ENSJJAG00000011144	Vars2	99	83.097	Jaculus_jaculus
ENSMUSG00000038838	Vars2	98	53.741	ENSKMAG00000001393	vars2	98	50.702	Kryptolebias_marmoratus
ENSMUSG00000038838	Vars2	83	64.516	ENSLBEG00000005480	-	81	62.319	Labrus_bergylta
ENSMUSG00000038838	Vars2	93	55.957	ENSLBEG00000011949	vars2	95	50.813	Labrus_bergylta
ENSMUSG00000038838	Vars2	97	59.051	ENSLACG00000001576	-	99	51.985	Latimeria_chalumnae
ENSMUSG00000038838	Vars2	99	82.386	ENSLAFG00000015183	VARS2	99	82.386	Loxodonta_africana
ENSMUSG00000038838	Vars2	99	83.837	ENSMFAG00000042367	VARS2	99	83.837	Macaca_fascicularis
ENSMUSG00000038838	Vars2	99	83.837	ENSMMUG00000018609	VARS2	99	83.837	Macaca_mulatta
ENSMUSG00000038838	Vars2	99	83.837	ENSMNEG00000043163	VARS2	99	83.837	Macaca_nemestrina
ENSMUSG00000038838	Vars2	99	84.216	ENSMLEG00000041728	VARS2	97	84.216	Mandrillus_leucophaeus
ENSMUSG00000038838	Vars2	98	53.002	ENSMAMG00000020339	vars2	96	50.622	Mastacembelus_armatus
ENSMUSG00000038838	Vars2	96	54.167	ENSMZEG00005017669	vars2	99	50.652	Maylandia_zebra
ENSMUSG00000038838	Vars2	63	60.000	ENSMGAG00000008005	-	100	57.246	Meleagris_gallopavo
ENSMUSG00000038838	Vars2	100	90.198	ENSMAUG00000018946	Vars2	100	90.198	Mesocricetus_auratus
ENSMUSG00000038838	Vars2	93	84.843	ENSMICG00000005365	VARS2	100	85.874	Microcebus_murinus
ENSMUSG00000038838	Vars2	94	92.970	ENSMOCG00000014607	Vars2	100	92.970	Microtus_ochrogaster
ENSMUSG00000038838	Vars2	96	56.514	ENSMMOG00000012122	vars2	98	51.418	Mola_mola
ENSMUSG00000038838	Vars2	99	73.987	ENSMODG00000015848	VARS2	99	73.987	Monodelphis_domestica
ENSMUSG00000038838	Vars2	96	56.162	ENSMALG00000009217	vars2	99	53.227	Monopterus_albus
ENSMUSG00000038838	Vars2	100	98.214	MGP_CAROLIEiJ_G0021529	Vars2	100	98.214	Mus_caroli
ENSMUSG00000038838	Vars2	100	98.214	MGP_PahariEiJ_G0020523	Vars2	100	98.214	Mus_pahari
ENSMUSG00000038838	Vars2	100	98.491	MGP_SPRETEiJ_G0022436	Vars2	100	98.491	Mus_spretus
ENSMUSG00000038838	Vars2	100	82.015	ENSMPUG00000011643	VARS2	100	82.015	Mustela_putorius_furo
ENSMUSG00000038838	Vars2	99	80.672	ENSMLUG00000002356	VARS2	97	80.672	Myotis_lucifugus
ENSMUSG00000038838	Vars2	90	92.079	ENSNGAG00000020607	Vars2	100	78.759	Nannospalax_galili
ENSMUSG00000038838	Vars2	60	47.934	ENSNBRG00000001624	vars2	57	48.485	Neolamprologus_brichardi
ENSMUSG00000038838	Vars2	99	80.208	ENSNLEG00000005625	VARS2	97	80.208	Nomascus_leucogenys
ENSMUSG00000038838	Vars2	77	75.362	ENSMEUG00000014475	VARS2	89	73.957	Notamacropus_eugenii
ENSMUSG00000038838	Vars2	93	78.373	ENSOPRG00000000682	VARS2	90	81.416	Ochotona_princeps
ENSMUSG00000038838	Vars2	99	80.508	ENSODEG00000017965	VARS2	99	80.508	Octodon_degus
ENSMUSG00000038838	Vars2	67	56.264	ENSONIG00000004734	vars2	75	56.264	Oreochromis_niloticus
ENSMUSG00000038838	Vars2	92	73.232	ENSOANG00000000398	-	98	82.353	Ornithorhynchus_anatinus
ENSMUSG00000038838	Vars2	99	77.252	ENSOCUG00000021496	VARS2	64	77.612	Oryctolagus_cuniculus
ENSMUSG00000038838	Vars2	98	54.545	ENSORLG00000010632	vars2	94	51.754	Oryzias_latipes
ENSMUSG00000038838	Vars2	98	54.545	ENSORLG00020018584	vars2	96	51.052	Oryzias_latipes_hni
ENSMUSG00000038838	Vars2	98	54.374	ENSORLG00015010408	vars2	96	50.760	Oryzias_latipes_hsok
ENSMUSG00000038838	Vars2	98	54.717	ENSOMEG00000008360	vars2	93	52.554	Oryzias_melastigma
ENSMUSG00000038838	Vars2	99	83.868	ENSOGAG00000006087	VARS2	97	83.868	Otolemur_garnettii
ENSMUSG00000038838	Vars2	99	83.507	ENSOARG00000010844	VARS2	98	83.381	Ovis_aries
ENSMUSG00000038838	Vars2	99	83.648	ENSPPAG00000041141	VARS2	99	83.648	Pan_paniscus
ENSMUSG00000038838	Vars2	100	82.109	ENSPPRG00000006751	VARS2	97	82.109	Panthera_pardus
ENSMUSG00000038838	Vars2	100	82.015	ENSPTIG00000017799	VARS2	98	83.199	Panthera_tigris_altaica
ENSMUSG00000038838	Vars2	99	83.648	ENSPTRG00000034497	VARS2	99	83.648	Pan_troglodytes
ENSMUSG00000038838	Vars2	99	84.121	ENSPANG00000018481	VARS2	100	84.318	Papio_anubis
ENSMUSG00000038838	Vars2	97	57.018	ENSPKIG00000011372	vars2	98	53.314	Paramormyrops_kingsleyae
ENSMUSG00000038838	Vars2	93	60.870	ENSPSIG00000006206	VARS2	92	65.591	Pelodiscus_sinensis
ENSMUSG00000038838	Vars2	88	65.306	ENSPMGG00000000465	vars2	98	52.453	Periophthalmus_magnuspinnatus
ENSMUSG00000038838	Vars2	100	92.264	ENSPEMG00000014691	Vars2	100	92.264	Peromyscus_maniculatus_bairdii
ENSMUSG00000038838	Vars2	99	75.614	ENSPCIG00000015040	VARS2	99	75.614	Phascolarctos_cinereus
ENSMUSG00000038838	Vars2	93	56.341	ENSPFOG00000017616	vars2	95	51.751	Poecilia_formosa
ENSMUSG00000038838	Vars2	93	55.495	ENSPLAG00000019778	vars2	99	50.000	Poecilia_latipinna
ENSMUSG00000038838	Vars2	93	55.676	ENSPMEG00000011123	vars2	97	50.904	Poecilia_mexicana
ENSMUSG00000038838	Vars2	92	55.474	ENSPREG00000014998	vars2	96	46.784	Poecilia_reticulata
ENSMUSG00000038838	Vars2	99	83.758	ENSPPYG00000016424	VARS2	99	83.758	Pongo_abelii
ENSMUSG00000038838	Vars2	93	71.357	ENSPCAG00000006946	VARS2	84	77.129	Procavia_capensis
ENSMUSG00000038838	Vars2	99	83.037	ENSPCOG00000014839	VARS2	97	83.037	Propithecus_coquereli
ENSMUSG00000038838	Vars2	99	81.853	ENSPVAG00000004197	VARS2	99	81.853	Pteropus_vampyrus
ENSMUSG00000038838	Vars2	82	59.140	ENSPNYG00000010314	vars2	100	59.140	Pundamilia_nyererei
ENSMUSG00000038838	Vars2	93	58.590	ENSPNAG00000026793	vars2	96	53.721	Pygocentrus_nattereri
ENSMUSG00000038838	Vars2	100	94.340	ENSRNOG00000000833	Vars2	100	94.340	Rattus_norvegicus
ENSMUSG00000038838	Vars2	99	83.837	ENSRBIG00000032725	VARS2	99	83.837	Rhinopithecus_bieti
ENSMUSG00000038838	Vars2	99	83.837	ENSRROG00000043847	VARS2	99	83.837	Rhinopithecus_roxellana
ENSMUSG00000038838	Vars2	99	81.331	ENSSBOG00000033240	VARS2	97	81.331	Saimiri_boliviensis_boliviensis
ENSMUSG00000038838	Vars2	99	74.764	ENSSHAG00000009307	VARS2	100	74.764	Sarcophilus_harrisii
ENSMUSG00000038838	Vars2	93	58.484	ENSSFOG00015016187	vars2	98	52.519	Scleropages_formosus
ENSMUSG00000038838	Vars2	98	55.497	ENSSMAG00000020842	vars2	97	52.050	Scophthalmus_maximus
ENSMUSG00000038838	Vars2	96	55.536	ENSSDUG00000011598	vars2	97	51.954	Seriola_dumerili
ENSMUSG00000038838	Vars2	96	55.929	ENSSLDG00000015492	vars2	97	51.052	Seriola_lalandi_dorsalis
ENSMUSG00000038838	Vars2	57	84.672	ENSSARG00000003786	-	69	84.672	Sorex_araneus
ENSMUSG00000038838	Vars2	96	60.142	ENSSPUG00000014700	VARS2	94	59.168	Sphenodon_punctatus
ENSMUSG00000038838	Vars2	97	52.972	ENSSPAG00000004654	vars2	98	49.242	Stegastes_partitus
ENSMUSG00000038838	Vars2	100	83.804	ENSSSCG00000001384	VARS2	100	83.804	Sus_scrofa
ENSMUSG00000038838	Vars2	94	58.076	ENSTRUG00000005264	vars2	94	53.360	Takifugu_rubripes
ENSMUSG00000038838	Vars2	93	57.326	ENSTNIG00000005916	vars2	95	52.182	Tetraodon_nigroviridis
ENSMUSG00000038838	Vars2	52	88.060	ENSTBEG00000007976	-	52	88.060	Tupaia_belangeri
ENSMUSG00000038838	Vars2	99	72.023	ENSTTRG00000012243	VARS2	99	72.023	Tursiops_truncatus
ENSMUSG00000038838	Vars2	100	82.220	ENSUAMG00000026124	VARS2	100	83.731	Ursus_americanus
ENSMUSG00000038838	Vars2	100	82.768	ENSUMAG00000019894	VARS2	100	82.768	Ursus_maritimus
ENSMUSG00000038838	Vars2	70	84.615	ENSVPAG00000003703	-	64	89.655	Vicugna_pacos
ENSMUSG00000038838	Vars2	100	81.638	ENSVVUG00000010754	VARS2	95	81.638	Vulpes_vulpes
ENSMUSG00000038838	Vars2	89	63.000	ENSXETG00000003036	vars2	99	54.879	Xenopus_tropicalis
ENSMUSG00000038838	Vars2	93	57.143	ENSXCOG00000003455	vars2	96	52.381	Xiphophorus_couchianus
ENSMUSG00000038838	Vars2	93	55.835	ENSXMAG00000013523	vars2	97	51.092	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0002161	aminoacyl-tRNA editing activity	-	IEA	Function
GO:0004812	aminoacyl-tRNA ligase activity	-	IEA	Function
GO:0004832	valine-tRNA ligase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006412	translation	-	IEA	Process
GO:0006418	tRNA aminoacylation for protein translation	-	IEA	Process
GO:0006438	valyl-tRNA aminoacylation	21873635.	IBA	Process
GO:0016874	ligase activity	-	IEA	Function