EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038845 (Gene tree)
Gene ID: 18673
Gene Symbol: Phb
Alias: -
Full Name: prohibitin
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 13817
Position: chr11: 95666957-95680773
Accession: 97572
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000123071	-	414	-	-	- (aa)	-	-
ENSMUST00000125172	-	1799	-	ENSMUSP00000119603	272 (aa)	-	P67778
ENSMUST00000036374	-	724	-	ENSMUSP00000047536	207 (aa)	-	Q5SQG5
ENSMUST00000127031	-	610	-	-	- (aa)	-	-
ENSMUST00000123001	-	733	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000038845's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038845's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038845	Phb	99	69.903	WBGene00004014	phb-1	98	66.543	Caenorhabditis_elegans
ENSMUSG00000038845	Phb	88	55.495	WBGene00004015	phb-2	88	50.193	Caenorhabditis_elegans
ENSMUSG00000038845	Phb	93	59.794	ENSMUSG00000004264	Phb2	97	60.000	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	18480465.	IDA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	18480465.	IDA	Function
GO:0001850	complement component C3a binding	-	ISO	Function
GO:0001851	complement component C3b binding	-	ISO	Function
GO:0005515	protein binding	26885862.	IPI	Function
GO:0005634	nucleus	18480465.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	11884367.17597094.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0005743	mitochondrial inner membrane	-	ISO	Component
GO:0005769	early endosome	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005887	integral component of plasma membrane	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	ISO	Process
GO:0007005	mitochondrion organization	-	ISO	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0008285	negative regulation of cell proliferation	-	ISO	Process
GO:0009986	cell surface	22417827.	IDA	Component
GO:0009986	cell surface	-	ISO	Component
GO:0010628	positive regulation of gene expression	-	ISO	Process
GO:0010942	positive regulation of cell death	-	ISO	Process
GO:0010944	negative regulation of transcription by competitive promoter binding	-	ISO	Process
GO:0014069	postsynaptic density	-	ISO	Component
GO:0016020	membrane	-	IEA	Component
GO:0016575	histone deacetylation	-	ISO	Process
GO:0019899	enzyme binding	-	ISO	Function
GO:0030061	mitochondrial crista	-	ISO	Component
GO:0030308	negative regulation of cell growth	-	ISO	Process
GO:0031315	extrinsic component of mitochondrial outer membrane	-	ISO	Component
GO:0031871	proteinase activated receptor binding	-	ISO	Function
GO:0042177	negative regulation of protein catabolic process	-	ISO	Process
GO:0042826	histone deacetylase binding	-	ISO	Function
GO:0043066	negative regulation of apoptotic process	-	ISO	Process
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0045745	positive regulation of G protein-coupled receptor signaling pathway	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045917	positive regulation of complement activation	-	ISO	Process
GO:0050821	protein stabilization	-	ISO	Process
GO:0050847	progesterone receptor signaling pathway	-	ISO	Process
GO:0060766	negative regulation of androgen receptor signaling pathway	-	ISO	Process
GO:0070373	negative regulation of ERK1 and ERK2 cascade	-	ISO	Process
GO:0070374	positive regulation of ERK1 and ERK2 cascade	-	ISO	Process
GO:0071354	cellular response to interleukin-6	-	ISO	Process
GO:0071897	DNA biosynthetic process	18480465.	IMP	Process
GO:0098891	extrinsic component of presynaptic active zone membrane	-	ISO	Component
GO:0098978	glutamatergic synapse	-	ISO	Component
GO:0098982	GABA-ergic synapse	-	ISO	Component
GO:2000323	negative regulation of glucocorticoid receptor signaling pathway	-	ISO	Process