EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000038848 (Gene tree)
Gene ID
228994
Gene Symbol
Ythdf1
Alias
2210410K23Rik
Full Name
YTH N6-methyladenosine RNA binding protein 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
16573 bases
Position
chr2:180904377-180920949
Accession
1917431
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000037808YTHPF04146.153.8e-4111
ENSMUSP00000104504YTHPF04146.154.4e-4111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000124666-596-ENSMUSP00000116665183 (aa)-A2AWN7
ENSMUST00000108876-2272-ENSMUSP00000104504586 (aa)-A2AWN8
ENSMUST00000037299-3184-ENSMUSP00000037808559 (aa)-P59326
Gene Model
Click here to download ENSMUSG00000038848's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038848's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000038848Ythdf19964.189ENSMUSG00000040025Ythdf210063.043
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000038848Ythdf110093.918ENSG00000149658YTHDF110093.918Homo_sapiens
ENSMUSG00000038848Ythdf19673.084ENSAPOG00000004358ythdf19772.872Acanthochromis_polyacanthus
ENSMUSG00000038848Ythdf110075.172ENSAPOG00000010796YTHDF110074.310Acanthochromis_polyacanthus
ENSMUSG00000038848Ythdf19992.922ENSAMEG00000017323YTHDF19892.922Ailuropoda_melanoleuca
ENSMUSG00000038848Ythdf19670.567ENSACIG00000011264ythdf19770.753Amphilophus_citrinellus
ENSMUSG00000038848Ythdf110075.390ENSACIG00000020083YTHDF110074.017Amphilophus_citrinellus
ENSMUSG00000038848Ythdf110074.564ENSAOCG00000012567YTHDF110074.093Amphiprion_ocellaris
ENSMUSG00000038848Ythdf19970.909ENSAOCG00000022251ythdf19873.310Amphiprion_ocellaris
ENSMUSG00000038848Ythdf19670.678ENSAPEG00000021878ythdf19570.539Amphiprion_percula
ENSMUSG00000038848Ythdf110074.739ENSAPEG00000008750YTHDF110074.266Amphiprion_percula
ENSMUSG00000038848Ythdf19671.892ENSATEG00000023840ythdf19872.028Anabas_testudineus
ENSMUSG00000038848Ythdf110074.216ENSATEG00000005996YTHDF110073.928Anabas_testudineus
ENSMUSG00000038848Ythdf19989.048ENSAPLG00000005985YTHDF19989.946Anas_platyrhynchos
ENSMUSG00000038848Ythdf110086.250ENSACAG00000005560YTHDF110086.250Anolis_carolinensis
ENSMUSG00000038848Ythdf110079.606ENSANAG00000021022-10079.606Aotus_nancymaae
ENSMUSG00000038848Ythdf110093.739ENSANAG00000034786-10094.106Aotus_nancymaae
ENSMUSG00000038848Ythdf110074.216ENSACLG00000025518YTHDF110073.748Astatotilapia_calliptera
ENSMUSG00000038848Ythdf110088.551ENSBTAG00000010383YTHDF110088.551Bos_taurus
ENSMUSG00000038848Ythdf110093.381ENSCJAG00000010056YTHDF110093.381Callithrix_jacchus
ENSMUSG00000038848Ythdf19193.110ENSCAFG00000012772YTHDF19993.110Canis_familiaris
ENSMUSG00000038848Ythdf19193.110ENSCAFG00020001214YTHDF19993.110Canis_lupus_dingo
ENSMUSG00000038848Ythdf110087.835ENSCHIG00000026494YTHDF110087.835Capra_hircus
ENSMUSG00000038848Ythdf19992.819ENSTSYG00000033436YTHDF19894.107Carlito_syrichta
ENSMUSG00000038848Ythdf19791.697ENSCAPG00000002544YTHDF19491.360Cavia_aperea
ENSMUSG00000038848Ythdf110093.739ENSCPOG00000010202YTHDF110093.739Cavia_porcellus
ENSMUSG00000038848Ythdf110093.202ENSCCAG00000024650YTHDF110093.202Cebus_capucinus
ENSMUSG00000038848Ythdf110094.097ENSCATG00000033272YTHDF110094.097Cercocebus_atys
ENSMUSG00000038848Ythdf110094.286ENSCLAG00000005989YTHDF110094.286Chinchilla_lanigera
ENSMUSG00000038848Ythdf110094.275ENSCSAG00000016266YTHDF110094.275Chlorocebus_sabaeus
ENSMUSG00000038848Ythdf110090.000ENSCPBG00000027183YTHDF110090.000Chrysemys_picta_bellii
ENSMUSG00000038848Ythdf19994.192ENSCANG00000029082YTHDF19894.192Colobus_angolensis_palliatus
ENSMUSG00000038848Ythdf110098.927ENSCGRG00001016568Ythdf110098.927Cricetulus_griseus_chok1gshd
ENSMUSG00000038848Ythdf19898.909ENSCGRG00000009207Ythdf110098.909Cricetulus_griseus_crigri
ENSMUSG00000038848Ythdf19672.993ENSCSEG00000020623YTHDF19873.007Cynoglossus_semilaevis
ENSMUSG00000038848Ythdf19970.495ENSCVAG00000017940ythdf19771.071Cyprinodon_variegatus
ENSMUSG00000038848Ythdf19773.882ENSCVAG00000014378YTHDF19975.269Cyprinodon_variegatus
ENSMUSG00000038848Ythdf110070.684ENSDARG00000016447ythdf19572.867Danio_rerio
ENSMUSG00000038848Ythdf110090.340ENSDNOG00000043590YTHDF110090.340Dasypus_novemcinctus
ENSMUSG00000038848Ythdf19888.468ENSDORG00000002879Ythdf110088.468Dipodomys_ordii
ENSMUSG00000038848Ythdf17964.103ENSETEG00000017860-9864.103Echinops_telfairi
ENSMUSG00000038848Ythdf110094.275ENSEASG00005023186YTHDF110094.275Equus_asinus_asinus
ENSMUSG00000038848Ythdf19894.000ENSECAG00000019475YTHDF110093.910Equus_caballus
ENSMUSG00000038848Ythdf19291.262ENSEEUG00000007461YTHDF110091.262Erinaceus_europaeus
ENSMUSG00000038848Ythdf19971.647ENSELUG00000022768ythdf19973.514Esox_lucius
ENSMUSG00000038848Ythdf19474.444ENSELUG00000001906YTHDF19972.152Esox_lucius
ENSMUSG00000038848Ythdf110092.308ENSFCAG00000008917YTHDF110092.308Felis_catus
ENSMUSG00000038848Ythdf110090.000ENSFALG00000010463YTHDF110090.000Ficedula_albicollis
ENSMUSG00000038848Ythdf110093.560ENSFDAG00000019602YTHDF110093.560Fukomys_damarensis
ENSMUSG00000038848Ythdf19775.357ENSFHEG00000002540YTHDF19974.291Fundulus_heteroclitus
ENSMUSG00000038848Ythdf19971.986ENSFHEG00000023218ythdf19870.870Fundulus_heteroclitus
ENSMUSG00000038848Ythdf18788.832ENSGMOG00000019610ythdf19569.468Gadus_morhua
ENSMUSG00000038848Ythdf110089.483ENSGALG00000005745YTHDF110090.411Gallus_gallus
ENSMUSG00000038848Ythdf110072.607ENSGAFG00000021100YTHDF19974.910Gambusia_affinis
ENSMUSG00000038848Ythdf110074.324ENSGACG00000002613YTHDF110072.297Gasterosteus_aculeatus
ENSMUSG00000038848Ythdf19671.930ENSGACG00000012014ythdf19571.528Gasterosteus_aculeatus
ENSMUSG00000038848Ythdf110090.357ENSGAGG00000003007YTHDF110090.357Gopherus_agassizii
ENSMUSG00000038848Ythdf110094.275ENSGGOG00000008340YTHDF110094.275Gorilla_gorilla
ENSMUSG00000038848Ythdf19671.705ENSHBUG00000011284ythdf19872.125Haplochromis_burtoni
ENSMUSG00000038848Ythdf110074.042ENSHBUG00000004875YTHDF110073.575Haplochromis_burtoni
ENSMUSG00000038848Ythdf110094.097ENSHGLG00000006585YTHDF110094.097Heterocephalus_glaber_female
ENSMUSG00000038848Ythdf110094.097ENSHGLG00100004683YTHDF110094.097Heterocephalus_glaber_male
ENSMUSG00000038848Ythdf19971.119ENSHCOG00000008866ythdf19871.259Hippocampus_comes
ENSMUSG00000038848Ythdf110069.952ENSHCOG00000011303YTHDF110073.481Hippocampus_comes
ENSMUSG00000038848Ythdf19776.545ENSIPUG00000000425Ythdf19875.492Ictalurus_punctatus
ENSMUSG00000038848Ythdf19994.192ENSSTOG00000023001YTHDF19994.192Ictidomys_tridecemlineatus
ENSMUSG00000038848Ythdf19896.727ENSJJAG00000013589Ythdf110096.727Jaculus_jaculus
ENSMUSG00000038848Ythdf19774.955ENSKMAG00000017472YTHDF19974.332Kryptolebias_marmoratus
ENSMUSG00000038848Ythdf19670.662ENSKMAG00000005595ythdf19870.973Kryptolebias_marmoratus
ENSMUSG00000038848Ythdf19672.302ENSLBEG00000014105ythdf19571.088Labrus_bergylta
ENSMUSG00000038848Ythdf110074.699ENSLBEG00000012068YTHDF110075.086Labrus_bergylta
ENSMUSG00000038848Ythdf19682.169ENSLACG00000014195YTHDF19684.644Latimeria_chalumnae
ENSMUSG00000038848Ythdf110077.069ENSLOCG00000005020ythdf19578.142Lepisosteus_oculatus
ENSMUSG00000038848Ythdf110091.771ENSLAFG00000008884YTHDF110091.771Loxodonta_africana
ENSMUSG00000038848Ythdf110094.275ENSMFAG00000042868YTHDF110094.275Macaca_fascicularis
ENSMUSG00000038848Ythdf110094.275ENSMMUG00000009227YTHDF110094.275Macaca_mulatta
ENSMUSG00000038848Ythdf110094.275ENSMNEG00000030851YTHDF110094.275Macaca_nemestrina
ENSMUSG00000038848Ythdf19894.364ENSMLEG00000009252YTHDF110094.364Mandrillus_leucophaeus
ENSMUSG00000038848Ythdf19671.532ENSMAMG00000024255ythdf19973.647Mastacembelus_armatus
ENSMUSG00000038848Ythdf110074.826ENSMAMG00000011072YTHDF110073.793Mastacembelus_armatus
ENSMUSG00000038848Ythdf110074.042ENSMZEG00005023596YTHDF110073.575Maylandia_zebra
ENSMUSG00000038848Ythdf19672.857ENSMZEG00005026397ythdf19873.274Maylandia_zebra
ENSMUSG00000038848Ythdf19988.551ENSMGAG00000006139YTHDF19989.445Meleagris_gallopavo
ENSMUSG00000038848Ythdf110098.927ENSMAUG00000017660Ythdf110098.927Mesocricetus_auratus
ENSMUSG00000038848Ythdf110093.918ENSMICG00000032266YTHDF110093.918Microcebus_murinus
ENSMUSG00000038848Ythdf110098.569ENSMOCG00000013573Ythdf110098.569Microtus_ochrogaster
ENSMUSG00000038848Ythdf19971.499ENSMMOG00000020467YTHDF19471.550Mola_mola
ENSMUSG00000038848Ythdf19190.802ENSMODG00000016842YTHDF110090.802Monodelphis_domestica
ENSMUSG00000038848Ythdf110073.070ENSMALG00000022209YTHDF110074.697Monopterus_albus
ENSMUSG00000038848Ythdf19671.556ENSMALG00000015672ythdf19671.277Monopterus_albus
ENSMUSG00000038848Ythdf1100100.000MGP_CAROLIEiJ_G0024790Ythdf1100100.000Mus_caroli
ENSMUSG00000038848Ythdf110099.642MGP_PahariEiJ_G0026237Ythdf110099.642Mus_pahari
ENSMUSG00000038848Ythdf1100100.000MGP_SPRETEiJ_G0025715Ythdf1100100.000Mus_spretus
ENSMUSG00000038848Ythdf19187.623ENSMPUG00000008111YTHDF110088.802Mustela_putorius_furo
ENSMUSG00000038848Ythdf19791.513ENSMLUG00000002241YTHDF19691.513Myotis_lucifugus
ENSMUSG00000038848Ythdf110097.674ENSNGAG00000000334Ythdf110097.674Nannospalax_galili
ENSMUSG00000038848Ythdf19970.447ENSNBRG00000008213ythdf19672.035Neolamprologus_brichardi
ENSMUSG00000038848Ythdf110074.042ENSNBRG00000015321YTHDF110073.575Neolamprologus_brichardi
ENSMUSG00000038848Ythdf19579.661ENSOPRG00000001758-9879.732Ochotona_princeps
ENSMUSG00000038848Ythdf110075.532ENSODEG00000000074-10078.369Octodon_degus
ENSMUSG00000038848Ythdf110093.750ENSODEG00000004380-10093.750Octodon_degus
ENSMUSG00000038848Ythdf19671.007ENSONIG00000016799ythdf19770.790Oreochromis_niloticus
ENSMUSG00000038848Ythdf110090.018ENSOANG00000003723YTHDF110090.553Ornithorhynchus_anatinus
ENSMUSG00000038848Ythdf110081.139ENSOCUG00000012780YTHDF110080.961Oryctolagus_cuniculus
ENSMUSG00000038848Ythdf19774.147ENSORLG00000009739YTHDF19974.731Oryzias_latipes
ENSMUSG00000038848Ythdf19670.121ENSORLG00000014665YTHDF19570.085Oryzias_latipes
ENSMUSG00000038848Ythdf19670.588ENSORLG00020000307ythdf19570.548Oryzias_latipes_hni
ENSMUSG00000038848Ythdf19775.091ENSORLG00020001332YTHDF19975.136Oryzias_latipes_hni
ENSMUSG00000038848Ythdf110071.476ENSORLG00015018321YTHDF19974.373Oryzias_latipes_hsok
ENSMUSG00000038848Ythdf19670.415ENSORLG00015006302ythdf19570.377Oryzias_latipes_hsok
ENSMUSG00000038848Ythdf110070.292ENSOMEG00000011843YTHDF19571.575Oryzias_melastigma
ENSMUSG00000038848Ythdf19673.153ENSOMEG00000002941YTHDF19873.310Oryzias_melastigma
ENSMUSG00000038848Ythdf110091.771ENSOGAG00000000480YTHDF110091.771Otolemur_garnettii
ENSMUSG00000038848Ythdf19983.848ENSOARG00000011639YTHDF19885.118Ovis_aries
ENSMUSG00000038848Ythdf19994.374ENSPPAG00000023277YTHDF110094.374Pan_paniscus
ENSMUSG00000038848Ythdf110092.487ENSPPRG00000020805YTHDF110092.487Panthera_pardus
ENSMUSG00000038848Ythdf19982.033ENSPTIG00000017355YTHDF19982.577Panthera_tigris_altaica
ENSMUSG00000038848Ythdf110094.275ENSPTRG00000013730YTHDF110094.275Pan_troglodytes
ENSMUSG00000038848Ythdf110094.275ENSPANG00000021472YTHDF110094.275Papio_anubis
ENSMUSG00000038848Ythdf110069.056ENSPKIG00000005427ythdf110068.900Paramormyrops_kingsleyae
ENSMUSG00000038848Ythdf19972.420ENSPKIG00000005026YTHDF19772.844Paramormyrops_kingsleyae
ENSMUSG00000038848Ythdf19790.110ENSPSIG00000005529YTHDF19690.503Pelodiscus_sinensis
ENSMUSG00000038848Ythdf19371.300ENSPMGG00000015328ythdf19671.864Periophthalmus_magnuspinnatus
ENSMUSG00000038848Ythdf19773.801ENSPMGG00000009101YTHDF19973.585Periophthalmus_magnuspinnatus
ENSMUSG00000038848Ythdf19898.909ENSPEMG00000020199Ythdf110098.909Peromyscus_maniculatus_bairdii
ENSMUSG00000038848Ythdf19989.531ENSPCIG00000017170YTHDF110090.802Phascolarctos_cinereus
ENSMUSG00000038848Ythdf19970.270ENSPFOG00000005405ythdf19570.862Poecilia_formosa
ENSMUSG00000038848Ythdf19972.487ENSPLAG00000006653ythdf19872.630Poecilia_latipinna
ENSMUSG00000038848Ythdf110070.370ENSPLAG00000006298YTHDF19571.477Poecilia_latipinna
ENSMUSG00000038848Ythdf19971.731ENSPMEG00000023753ythdf19871.864Poecilia_mexicana
ENSMUSG00000038848Ythdf110072.997ENSPMEG00000020969-10073.345Poecilia_mexicana
ENSMUSG00000038848Ythdf19971.504ENSPREG00000002173ythdf19872.352Poecilia_reticulata
ENSMUSG00000038848Ythdf19770.647ENSPREG00000017662YTHDF19371.154Poecilia_reticulata
ENSMUSG00000038848Ythdf19878.947ENSPPYG00000011226YTHDF110098.010Pongo_abelii
ENSMUSG00000038848Ythdf18985.455ENSPCAG00000002452YTHDF19885.371Procavia_capensis
ENSMUSG00000038848Ythdf110094.275ENSPCOG00000025969YTHDF110094.275Propithecus_coquereli
ENSMUSG00000038848Ythdf19883.455ENSPVAG00000017568YTHDF19883.610Pteropus_vampyrus
ENSMUSG00000038848Ythdf110074.042ENSPNYG00000002266YTHDF110073.575Pundamilia_nyererei
ENSMUSG00000038848Ythdf19672.857ENSPNYG00000014007ythdf19873.274Pundamilia_nyererei
ENSMUSG00000038848Ythdf110070.752ENSPNAG00000012447ythdf110074.735Pygocentrus_nattereri
ENSMUSG00000038848Ythdf110099.284ENSRNOG00000027015Ythdf110099.284Rattus_norvegicus
ENSMUSG00000038848Ythdf110093.023ENSRBIG00000044959YTHDF110093.023Rhinopithecus_bieti
ENSMUSG00000038848Ythdf110092.844ENSRROG00000033014YTHDF110092.844Rhinopithecus_roxellana
ENSMUSG00000038848Ythdf19791.328ENSSBOG00000027278YTHDF110091.552Saimiri_boliviensis_boliviensis
ENSMUSG00000038848Ythdf19988.889ENSSHAG00000010430YTHDF18990.143Sarcophilus_harrisii
ENSMUSG00000038848Ythdf110073.051ENSSFOG00015000284ythdf110073.729Scleropages_formosus
ENSMUSG00000038848Ythdf17283.444ENSSMAG00000013715ythdf19464.497Scophthalmus_maximus
ENSMUSG00000038848Ythdf19579.757ENSSMAG00000007635YTHDF19473.451Scophthalmus_maximus
ENSMUSG00000038848Ythdf19975.528ENSSDUG00000015823YTHDF19974.780Seriola_dumerili
ENSMUSG00000038848Ythdf19673.524ENSSDUG00000000435ythdf19673.451Seriola_dumerili
ENSMUSG00000038848Ythdf19670.669ENSSLDG00000024948ythdf19670.798Seriola_lalandi_dorsalis
ENSMUSG00000038848Ythdf110069.937ENSSLDG00000001054YTHDF110072.566Seriola_lalandi_dorsalis
ENSMUSG00000038848Ythdf19187.255ENSSPUG00000015143YTHDF110087.255Sphenodon_punctatus
ENSMUSG00000038848Ythdf19670.101ENSSPAG00000014989ythdf19670.184Stegastes_partitus
ENSMUSG00000038848Ythdf110073.748ENSSPAG00000003666YTHDF110073.288Stegastes_partitus
ENSMUSG00000038848Ythdf110088.929ENSSSCG00000040086YTHDF110089.286Sus_scrofa
ENSMUSG00000038848Ythdf19989.150ENSTGUG00000007565YTHDF110090.054Taeniopygia_guttata
ENSMUSG00000038848Ythdf19671.017ENSTRUG00000005049YTHDF19870.489Takifugu_rubripes
ENSMUSG00000038848Ythdf19971.549ENSTRUG00000004288ythdf19870.669Takifugu_rubripes
ENSMUSG00000038848Ythdf110072.727ENSTNIG00000003975YTHDF110072.378Tetraodon_nigroviridis
ENSMUSG00000038848Ythdf19971.303ENSTNIG00000012490ythdf19972.154Tetraodon_nigroviridis
ENSMUSG00000038848Ythdf19988.043ENSTTRG00000001804YTHDF19888.029Tursiops_truncatus
ENSMUSG00000038848Ythdf19792.804ENSUAMG00000011021YTHDF110092.731Ursus_americanus
ENSMUSG00000038848Ythdf19192.338ENSUMAG00000022290YTHDF110092.338Ursus_maritimus
ENSMUSG00000038848Ythdf19192.717ENSVVUG00000015275YTHDF19992.717Vulpes_vulpes
ENSMUSG00000038848Ythdf19684.317ENSXETG00000027086ythdf19483.521Xenopus_tropicalis
ENSMUSG00000038848Ythdf19770.978ENSXCOG00000008115YTHDF19471.154Xiphophorus_couchianus
ENSMUSG00000038848Ythdf19672.080ENSXCOG00000002490ythdf19372.963Xiphophorus_couchianus
ENSMUSG00000038848Ythdf19672.628ENSXMAG00000008525ythdf19772.143Xiphophorus_maculatus
ENSMUSG00000038848Ythdf19774.955ENSXMAG00000015644YTHDF19974.688Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction
GO:0005575cellular_component-NDComponent
GO:0005737cytoplasm-IEAComponent
GO:0043022ribosome binding-ISOFunction
GO:0045727positive regulation of translation-ISOProcess
GO:0045948positive regulation of translational initiation-ISOProcess
GO:1990247N6-methyladenosine-containing RNA binding-ISOFunction

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