EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038872 (Gene tree)
Gene ID: 11906
Gene Symbol: Zfhx3
Alias: A230102L03Rik|Atbf1|Sci|WBP9
Full Name: zinc finger homeobox 3
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 1018987 bases
Position: chr8:107942644-108961630
Accession: 99948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000044612	zf-C2H2	PF00096.26	5.5e-12	1	2
ENSMUSP00000044612	zf-C2H2	PF00096.26	5.5e-12	2	2
ENSMUSP00000152353	zf-C2H2	PF00096.26	5.5e-12	1	2
ENSMUSP00000152353	zf-C2H2	PF00096.26	5.5e-12	2	2
ENSMUSP00000044612	zf-met	PF12874.7	2.5e-05	1	1
ENSMUSP00000152353	zf-met	PF12874.7	2.5e-05	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000221100	-	1011	-	-	- (aa)	-	-
ENSMUST00000212094	-	834	-	-	- (aa)	-	-
ENSMUST00000220518	-	17152	-	ENSMUSP00000152353	3723 (aa)	-	E9QMD3
ENSMUST00000221237	-	817	-	-	- (aa)	-	-
ENSMUST00000221632	-	1296	-	-	- (aa)	-	-
ENSMUST00000188994	-	1212	-	ENSMUSP00000140025	17 (aa)	-	A0A087WQ36
ENSMUST00000043896	-	16433	XM_006530585	ENSMUSP00000044612	3723 (aa)	XP_006530648	E9QMD3

Gene Model

Click here to download ENSMUSG00000038872's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038872's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038872	Zfhx3	100	93.289	ENSG00000140836	ZFHX3	100	92.460	Homo_sapiens
ENSMUSG00000038872	Zfhx3	100	91.649	ENSAMEG00000002197	ZFHX3	100	92.026	Ailuropoda_melanoleuca
ENSMUSG00000038872	Zfhx3	86	64.659	ENSATEG00000004640	zfhx3	95	63.786	Anabas_testudineus
ENSMUSG00000038872	Zfhx3	95	84.854	ENSAPLG00000002327	ZFHX3	99	84.685	Anas_platyrhynchos
ENSMUSG00000038872	Zfhx3	100	92.771	ENSANAG00000033325	ZFHX3	100	92.718	Aotus_nancymaae
ENSMUSG00000038872	Zfhx3	52	64.353	ENSACLG00000001914	zfhx3	100	62.516	Astatotilapia_calliptera
ENSMUSG00000038872	Zfhx3	61	66.059	ENSAMXG00000004340	zfhx3	56	61.111	Astyanax_mexicanus
ENSMUSG00000038872	Zfhx3	100	91.130	ENSBTAG00000014636	ZFHX3	100	91.509	Bos_taurus
ENSMUSG00000038872	Zfhx3	100	93.360	ENSCJAG00000043080	ZFHX3	100	93.150	Callithrix_jacchus
ENSMUSG00000038872	Zfhx3	100	92.478	ENSCAFG00000020243	ZFHX3	100	92.211	Canis_familiaris
ENSMUSG00000038872	Zfhx3	100	92.382	ENSCAFG00020020336	ZFHX3	100	92.462	Canis_lupus_dingo
ENSMUSG00000038872	Zfhx3	100	90.979	ENSCHIG00000018446	ZFHX3	100	91.224	Capra_hircus
ENSMUSG00000038872	Zfhx3	100	91.979	ENSTSYG00000029930	ZFHX3	100	91.872	Carlito_syrichta
ENSMUSG00000038872	Zfhx3	93	100.000	ENSCAPG00000010889	ZFHX3	99	96.610	Cavia_aperea
ENSMUSG00000038872	Zfhx3	100	91.765	ENSCPOG00000009111	ZFHX3	100	91.664	Cavia_porcellus
ENSMUSG00000038872	Zfhx3	100	92.518	ENSCCAG00000026346	ZFHX3	100	92.287	Cebus_capucinus
ENSMUSG00000038872	Zfhx3	100	93.221	ENSCATG00000022545	ZFHX3	100	92.811	Cercocebus_atys
ENSMUSG00000038872	Zfhx3	100	93.488	ENSCLAG00000007000	ZFHX3	100	93.061	Chinchilla_lanigera
ENSMUSG00000038872	Zfhx3	100	93.029	ENSCSAG00000004171	ZFHX3	100	93.003	Chlorocebus_sabaeus
ENSMUSG00000038872	Zfhx3	100	93.644	ENSCANG00000034216	ZFHX3	100	93.137	Colobus_angolensis_palliatus
ENSMUSG00000038872	Zfhx3	100	96.089	ENSCGRG00001012831	Zfhx3	100	96.089	Cricetulus_griseus_chok1gshd
ENSMUSG00000038872	Zfhx3	100	90.403	ENSCGRG00000001001	Zfhx3	100	90.562	Cricetulus_griseus_crigri
ENSMUSG00000038872	Zfhx3	97	62.930	ENSCSEG00000001762	zfhx3	95	62.634	Cynoglossus_semilaevis
ENSMUSG00000038872	Zfhx3	71	66.797	ENSCVAG00000000602	zfhx3	86	63.254	Cyprinodon_variegatus
ENSMUSG00000038872	Zfhx3	100	91.997	ENSDNOG00000046047	ZFHX3	100	91.194	Dasypus_novemcinctus
ENSMUSG00000038872	Zfhx3	100	92.914	ENSEASG00005021387	ZFHX3	100	92.460	Equus_asinus_asinus
ENSMUSG00000038872	Zfhx3	100	92.914	ENSECAG00000022984	ZFHX3	100	93.088	Equus_caballus
ENSMUSG00000038872	Zfhx3	84	92.013	ENSEEUG00000008705	ZFHX3	92	90.750	Erinaceus_europaeus
ENSMUSG00000038872	Zfhx3	100	62.397	ENSELUG00000014311	zfhx3	100	62.556	Esox_lucius
ENSMUSG00000038872	Zfhx3	100	92.920	ENSFCAG00000023839	ZFHX3	100	92.920	Felis_catus
ENSMUSG00000038872	Zfhx3	96	87.154	ENSFALG00000002706	ZFHX3	96	86.900	Ficedula_albicollis
ENSMUSG00000038872	Zfhx3	100	91.967	ENSFDAG00000015753	ZFHX3	100	91.033	Fukomys_damarensis
ENSMUSG00000038872	Zfhx3	97	63.119	ENSFHEG00000013474	zfhx3	100	68.510	Fundulus_heteroclitus
ENSMUSG00000038872	Zfhx3	85	65.555	ENSGMOG00000002909	zfhx3	100	62.853	Gadus_morhua
ENSMUSG00000038872	Zfhx3	100	85.049	ENSGALG00000000713	ZFHX3	100	85.256	Gallus_gallus
ENSMUSG00000038872	Zfhx3	97	62.991	ENSGAFG00000017278	zfhx3	95	63.562	Gambusia_affinis
ENSMUSG00000038872	Zfhx3	86	64.676	ENSGACG00000015779	zfhx3	86	64.794	Gasterosteus_aculeatus
ENSMUSG00000038872	Zfhx3	100	84.883	ENSGAGG00000002102	ZFHX3	100	85.772	Gopherus_agassizii
ENSMUSG00000038872	Zfhx3	99	93.226	ENSGGOG00000012083	ZFHX3	100	92.510	Gorilla_gorilla
ENSMUSG00000038872	Zfhx3	52	64.353	ENSHBUG00000013200	zfhx3	100	62.566	Haplochromis_burtoni
ENSMUSG00000038872	Zfhx3	100	92.553	ENSHGLG00000012541	ZFHX3	100	91.885	Heterocephalus_glaber_female
ENSMUSG00000038872	Zfhx3	100	92.017	ENSHGLG00100000797	ZFHX3	100	91.484	Heterocephalus_glaber_male
ENSMUSG00000038872	Zfhx3	71	67.225	ENSHCOG00000003135	zfhx3	86	64.054	Hippocampus_comes
ENSMUSG00000038872	Zfhx3	97	64.159	ENSIPUG00000006119	zfhx3	95	64.203	Ictalurus_punctatus
ENSMUSG00000038872	Zfhx3	100	93.392	ENSSTOG00000027206	ZFHX3	100	92.991	Ictidomys_tridecemlineatus
ENSMUSG00000038872	Zfhx3	86	64.512	ENSKMAG00000006781	zfhx3	95	63.665	Kryptolebias_marmoratus
ENSMUSG00000038872	Zfhx3	97	66.485	ENSLOCG00000004206	zfhx3	100	65.004	Lepisosteus_oculatus
ENSMUSG00000038872	Zfhx3	100	92.345	ENSLAFG00000017476	ZFHX3	100	92.586	Loxodonta_africana
ENSMUSG00000038872	Zfhx3	100	93.963	ENSMFAG00000034225	ZFHX3	100	93.346	Macaca_fascicularis
ENSMUSG00000038872	Zfhx3	100	93.882	ENSMMUG00000021041	ZFHX3	100	92.863	Macaca_mulatta
ENSMUSG00000038872	Zfhx3	100	93.911	ENSMNEG00000030137	ZFHX3	100	93.267	Macaca_nemestrina
ENSMUSG00000038872	Zfhx3	100	93.589	ENSMLEG00000042563	ZFHX3	100	93.164	Mandrillus_leucophaeus
ENSMUSG00000038872	Zfhx3	97	63.070	ENSMAMG00000021509	zfhx3	95	64.273	Mastacembelus_armatus
ENSMUSG00000038872	Zfhx3	52	64.254	ENSMZEG00005014216	zfhx3	100	62.465	Maylandia_zebra
ENSMUSG00000038872	Zfhx3	100	94.029	ENSMAUG00000000602	Zfhx3	100	94.406	Mesocricetus_auratus
ENSMUSG00000038872	Zfhx3	100	92.869	ENSMICG00000003537	ZFHX3	100	93.164	Microcebus_murinus
ENSMUSG00000038872	Zfhx3	100	94.792	ENSMOCG00000017998	Zfhx3	100	94.881	Microtus_ochrogaster
ENSMUSG00000038872	Zfhx3	86	65.096	ENSMMOG00000016551	zfhx3	95	64.203	Mola_mola
ENSMUSG00000038872	Zfhx3	100	98.525	MGP_PahariEiJ_G0023139	Zfhx3	100	98.525	Mus_pahari
ENSMUSG00000038872	Zfhx3	100	99.517	MGP_SPRETEiJ_G0032657	Zfhx3	100	99.517	Mus_spretus
ENSMUSG00000038872	Zfhx3	57	93.426	ENSMPUG00000007747	ZFHX3	100	91.740	Mustela_putorius_furo
ENSMUSG00000038872	Zfhx3	100	91.765	ENSMLUG00000016100	ZFHX3	100	91.819	Myotis_lucifugus
ENSMUSG00000038872	Zfhx3	100	91.199	ENSNGAG00000001724	Zfhx3	100	91.012	Nannospalax_galili
ENSMUSG00000038872	Zfhx3	52	64.268	ENSNBRG00000010822	zfhx3	100	62.396	Neolamprologus_brichardi
ENSMUSG00000038872	Zfhx3	88	91.845	ENSNLEG00000032567	ZFHX3	99	91.784	Nomascus_leucogenys
ENSMUSG00000038872	Zfhx3	100	90.892	ENSODEG00000014257	ZFHX3	100	90.759	Octodon_degus
ENSMUSG00000038872	Zfhx3	62	77.199	ENSONIG00000005914	zfhx3	98	71.749	Oreochromis_niloticus
ENSMUSG00000038872	Zfhx3	86	90.367	ENSOANG00000005084	ZFHX3	100	88.773	Ornithorhynchus_anatinus
ENSMUSG00000038872	Zfhx3	87	91.947	ENSOCUG00000017910	-	99	91.978	Oryctolagus_cuniculus
ENSMUSG00000038872	Zfhx3	82	65.818	ENSORLG00000007874	zfhx3	95	63.203	Oryzias_latipes
ENSMUSG00000038872	Zfhx3	97	62.964	ENSORLG00020009729	zfhx3	95	63.203	Oryzias_latipes_hni
ENSMUSG00000038872	Zfhx3	97	62.653	ENSORLG00015007912	zfhx3	86	64.315	Oryzias_latipes_hsok
ENSMUSG00000038872	Zfhx3	97	62.750	ENSOMEG00000001800	zfhx3	95	63.434	Oryzias_melastigma
ENSMUSG00000038872	Zfhx3	100	91.792	ENSPPRG00000005184	ZFHX3	100	92.114	Panthera_pardus
ENSMUSG00000038872	Zfhx3	100	93.196	ENSPTRG00000008340	ZFHX3	100	92.633	Pan_troglodytes
ENSMUSG00000038872	Zfhx3	100	93.800	ENSPANG00000010456	ZFHX3	100	93.425	Papio_anubis
ENSMUSG00000038872	Zfhx3	90	74.104	ENSPKIG00000009598	zfhx3	93	65.276	Paramormyrops_kingsleyae
ENSMUSG00000038872	Zfhx3	84	64.477	ENSPKIG00000001525	-	95	62.707	Paramormyrops_kingsleyae
ENSMUSG00000038872	Zfhx3	100	95.984	ENSPEMG00000010630	Zfhx3	100	95.984	Peromyscus_maniculatus_bairdii
ENSMUSG00000038872	Zfhx3	97	62.850	ENSPFOG00000001702	zfhx3	95	63.804	Poecilia_formosa
ENSMUSG00000038872	Zfhx3	97	63.180	ENSPLAG00000018955	zfhx3	95	63.957	Poecilia_latipinna
ENSMUSG00000038872	Zfhx3	97	62.912	ENSPMEG00000022333	zfhx3	95	63.893	Poecilia_mexicana
ENSMUSG00000038872	Zfhx3	86	94.016	ENSPPYG00000007513	ZFHX3	100	93.705	Pongo_abelii
ENSMUSG00000038872	Zfhx3	87	90.758	ENSPCAG00000010600	ZFHX3	99	90.142	Procavia_capensis
ENSMUSG00000038872	Zfhx3	100	92.871	ENSPCOG00000025382	ZFHX3	100	93.085	Propithecus_coquereli
ENSMUSG00000038872	Zfhx3	96	91.309	ENSPVAG00000006664	ZFHX3	96	92.189	Pteropus_vampyrus
ENSMUSG00000038872	Zfhx3	52	63.828	ENSPNYG00000013409	zfhx3	100	62.309	Pundamilia_nyererei
ENSMUSG00000038872	Zfhx3	100	97.323	ENSRNOG00000014452	Zfhx3	100	97.323	Rattus_norvegicus
ENSMUSG00000038872	Zfhx3	100	92.574	ENSRBIG00000031579	ZFHX3	100	91.906	Rhinopithecus_bieti
ENSMUSG00000038872	Zfhx3	100	93.889	ENSRROG00000039904	ZFHX3	100	93.167	Rhinopithecus_roxellana
ENSMUSG00000038872	Zfhx3	91	93.302	ENSSBOG00000034332	ZFHX3	96	93.302	Saimiri_boliviensis_boliviensis
ENSMUSG00000038872	Zfhx3	84	65.278	ENSSFOG00015019511	zfhx3	98	62.910	Scleropages_formosus
ENSMUSG00000038872	Zfhx3	93	73.333	ENSSFOG00015014986	zfhx3	88	71.840	Scleropages_formosus
ENSMUSG00000038872	Zfhx3	86	64.971	ENSSPAG00000002113	zfhx3	100	62.707	Stegastes_partitus
ENSMUSG00000038872	Zfhx3	100	92.029	ENSSSCG00000002752	ZFHX3	100	91.447	Sus_scrofa
ENSMUSG00000038872	Zfhx3	95	84.513	ENSTGUG00000008190	ZFHX3	94	84.934	Taeniopygia_guttata
ENSMUSG00000038872	Zfhx3	86	64.673	ENSTRUG00000017601	zfhx3	95	63.806	Takifugu_rubripes
ENSMUSG00000038872	Zfhx3	100	92.511	ENSVVUG00000017344	ZFHX3	100	91.951	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	21873635.	IBA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	26232227.	IDA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005667	transcription factor complex	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	14651853.	HDA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0007420	brain development	21873635.	IBA	Process
GO:0007517	muscle organ development	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016604	nuclear body	-	ISO	Component
GO:0019899	enzyme binding	-	ISO	Function
GO:0032922	circadian regulation of gene expression	26232227.	IMP	Process
GO:0043565	sequence-specific DNA binding	-	IEA	Function
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0045662	negative regulation of myoblast differentiation	-	ISO	Process
GO:0045663	positive regulation of myoblast differentiation	-	ISO	Process
GO:0045664	regulation of neuron differentiation	21873635.	IBA	Process
GO:0045785	positive regulation of cell adhesion	20876357.	IMP	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045893	positive regulation of transcription, DNA-templated	26232227.	IMP	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	20876357.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0071559	response to transforming growth factor beta	-	ISO	Process
GO:1904059	regulation of locomotor rhythm	26232227.	IMP	Process