EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038884 (Gene tree)
Gene ID: 319278
Gene Symbol: A230050P20Rik
Alias: -
Full Name: RIKEN cDNA A230050P20 gene
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 5666
Position: chr9: 20868642-20874307
Accession: 2441788
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000043911	-	1683	XM_006510405	ENSMUSP00000045384	290 (aa)	XP_006510468	Q8CAK3
ENSMUST00000176142	-	765	-	-	- (aa)	-	-
ENSMUST00000177067	-	1043	-	-	- (aa)	-	-
ENSMUST00000176990	-	868	-	-	- (aa)	-	-
ENSMUST00000175820	-	3210	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000038884's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038884's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038884	A230050P20Rik	100	93.471	ENSG00000130813	C19orf66	100	95.533	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0034340	response to type I interferon	-	ISO	Process
GO:0034341	response to interferon-gamma	-	ISO	Process
GO:0034342	response to type III interferon	-	ISO	Process
GO:0045071	negative regulation of viral genome replication	-	ISO	Process
GO:0051607	defense response to virus	-	ISO	Process