EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000038902 (Gene tree)
Gene ID: 229584
Gene Symbol: Pogz
Alias: 9530006B08Rik
Full Name: pogo transposable element with ZNF domain
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 44760
Position: chr3: 94837567-94882326
Accession: 2442117
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000107270	-	6399	XM_011240090	ENSMUSP00000102891	1409 (aa)	XP_011238392	Q8BZH4
ENSMUST00000107265	-	742	-	-	- (aa)	-	-
ENSMUST00000125638	-	279	-	-	- (aa)	-	-
ENSMUST00000107266	-	4100	XM_006501362	ENSMUSP00000102887	1356 (aa)	XP_006501425	D3YUX1
ENSMUST00000107269	-	5966	-	ENSMUSP00000102890	1314 (aa)	-	D3YUW8
ENSMUST00000132544	-	744	-	-	- (aa)	-	-
ENSMUST00000126235	-	2933	-	-	- (aa)	-	-
ENSMUST00000042402	-	4775	XM_006501364	ENSMUSP00000037523	1400 (aa)	XP_006501427	Q0VGT3
ENSMUST00000140397	-	517	-	ENSMUSP00000122492	54 (aa)	-	F7D0L1
ENSMUST00000142253	-	777	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000038902's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038902's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000038902	Pogz	100	93.560	ENSG00000143442	POGZ	100	98.013	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	21873635.	IBA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0007049	cell cycle	-	IEA	Process
GO:0007064	mitotic sister chromatid cohesion	-	ISO	Process
GO:0010468	regulation of gene expression	21873635.	IBA	Process
GO:0035097	histone methyltransferase complex	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0051301	cell division	-	IEA	Process
GO:0051382	kinetochore assembly	-	ISO	Process