EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000038957 (Gene tree)
Gene ID
353190
Gene Symbol
Edc3
Alias
Lsm16|Yjdc
Full Name
enhancer of mRNA decapping 3
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
43960 bases
Position
chr9:57708540-57752499
Accession
2142951
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000049146FDFPF09532.104.7e-1711
ENSMUSP00000123505LSM14PF12701.75.1e-1111
ENSMUSP00000049146LSM14PF12701.71.6e-0911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000043990-5708XM_006511247ENSMUSP00000049146508 (aa)XP_006511310Q8K2D3
ENSMUST00000137245-4277-ENSMUSP0000012331757 (aa)-D6RCX6
ENSMUST00000142807-443-ENSMUSP0000012350565 (aa)-D3YYS4
Gene Model
Click here to download ENSMUSG00000038957's gene model file
Pathways
Pathway IDPathway NameSource
mmu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000038957's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000038957Edc310098.462ENSG00000179151EDC310098.246Homo_sapiens
ENSMUSG00000038957Edc310080.000ENSAPOG00000010791edc310068.959Acanthochromis_polyacanthus
ENSMUSG00000038957Edc310073.846ENSAPOG00000008655EDC310055.922Acanthochromis_polyacanthus
ENSMUSG00000038957Edc310096.923ENSAMEG00000008963EDC310095.079Ailuropoda_melanoleuca
ENSMUSG00000038957Edc310072.308ENSACIG00000005330EDC39959.922Amphilophus_citrinellus
ENSMUSG00000038957Edc310078.947ENSACIG00000017751edc310068.566Amphilophus_citrinellus
ENSMUSG00000038957Edc310080.000ENSAOCG00000005431edc310069.155Amphiprion_ocellaris
ENSMUSG00000038957Edc310076.923ENSAOCG00000009103-10057.364Amphiprion_ocellaris
ENSMUSG00000038957Edc310076.923ENSAPEG00000007841EDC310057.364Amphiprion_percula
ENSMUSG00000038957Edc310080.000ENSAPEG00000000968edc310069.155Amphiprion_percula
ENSMUSG00000038957Edc310080.000ENSATEG00000015505edc310070.334Anabas_testudineus
ENSMUSG00000038957Edc310075.385ENSATEG00000004205-10058.447Anabas_testudineus
ENSMUSG00000038957Edc39086.813ENSAPLG00000008957EDC310086.154Anas_platyrhynchos
ENSMUSG00000038957Edc310092.308ENSACAG00000000460-10086.650Anolis_carolinensis
ENSMUSG00000038957Edc310098.462ENSANAG00000024078EDC310095.866Aotus_nancymaae
ENSMUSG00000038957Edc310072.308ENSACLG00000018776-9958.090Astatotilapia_calliptera
ENSMUSG00000038957Edc310078.947ENSACLG00000007232edc310068.173Astatotilapia_calliptera
ENSMUSG00000038957Edc310080.000ENSAMXG00000001589edc310070.980Astyanax_mexicanus
ENSMUSG00000038957Edc310098.462ENSBTAG00000007308EDC310095.079Bos_taurus
ENSMUSG00000038957Edc310098.462ENSCJAG00000017681EDC310095.866Callithrix_jacchus
ENSMUSG00000038957Edc310098.462ENSCAFG00000017935EDC310095.079Canis_familiaris
ENSMUSG00000038957Edc310098.462ENSCAFG00020003909EDC310095.079Canis_lupus_dingo
ENSMUSG00000038957Edc310098.462ENSCHIG00000023658EDC310095.669Capra_hircus
ENSMUSG00000038957Edc310098.462ENSTSYG00000004822EDC310095.276Carlito_syrichta
ENSMUSG00000038957Edc39698.182ENSCAPG00000000377-10098.182Cavia_aperea
ENSMUSG00000038957Edc310098.462ENSCPOG00000015595EDC310094.291Cavia_porcellus
ENSMUSG00000038957Edc310098.462ENSCCAG00000021663EDC310096.063Cebus_capucinus
ENSMUSG00000038957Edc310098.462ENSCATG00000037511EDC310096.063Cercocebus_atys
ENSMUSG00000038957Edc310098.462ENSCLAG00000005700EDC310094.685Chinchilla_lanigera
ENSMUSG00000038957Edc310098.462ENSCSAG00000014239EDC310096.063Chlorocebus_sabaeus
ENSMUSG00000038957Edc310096.923ENSCPBG00000024239EDC310088.583Chrysemys_picta_bellii
ENSMUSG00000038957Edc310038.269ENSCING00000022142-9938.077Ciona_intestinalis
ENSMUSG00000038957Edc310098.462ENSCANG00000028699EDC310096.063Colobus_angolensis_palliatus
ENSMUSG00000038957Edc3100100.000ENSCGRG00001013874Edc310097.835Cricetulus_griseus_chok1gshd
ENSMUSG00000038957Edc3100100.000ENSCGRG00000011885Edc310097.835Cricetulus_griseus_crigri
ENSMUSG00000038957Edc310080.000ENSCSEG00000012996edc39968.701Cynoglossus_semilaevis
ENSMUSG00000038957Edc310078.462ENSCVAG00000008023edc310068.566Cyprinodon_variegatus
ENSMUSG00000038957Edc310072.308ENSDARG00000051931edc39968.235Danio_rerio
ENSMUSG00000038957Edc310098.462ENSDNOG00000030661EDC310083.915Dasypus_novemcinctus
ENSMUSG00000038957Edc39698.182ENSDORG00000025261-10098.182Dipodomys_ordii
ENSMUSG00000038957Edc39596.296ENSETEG00000002398-6496.296Echinops_telfairi
ENSMUSG00000038957Edc310098.462ENSEASG00005005071EDC310095.866Equus_asinus_asinus
ENSMUSG00000038957Edc310098.462ENSECAG00000017994EDC310095.866Equus_caballus
ENSMUSG00000038957Edc310073.846ENSELUG00000007607EDC310062.231Esox_lucius
ENSMUSG00000038957Edc310078.462ENSELUG00000005794edc310065.497Esox_lucius
ENSMUSG00000038957Edc310096.923ENSFCAG00000002014EDC310094.882Felis_catus
ENSMUSG00000038957Edc310096.923ENSFALG00000004543EDC39684.369Ficedula_albicollis
ENSMUSG00000038957Edc310098.462ENSFDAG00000012582EDC310094.291Fukomys_damarensis
ENSMUSG00000038957Edc310078.462ENSFHEG00000009375edc310068.959Fundulus_heteroclitus
ENSMUSG00000038957Edc310080.000ENSGMOG00000002715edc310066.992Gadus_morhua
ENSMUSG00000038957Edc310096.923ENSGALG00000040181EDC310087.795Gallus_gallus
ENSMUSG00000038957Edc310078.462ENSGAFG00000014433edc310067.780Gambusia_affinis
ENSMUSG00000038957Edc310076.923ENSGACG00000009783edc310068.173Gasterosteus_aculeatus
ENSMUSG00000038957Edc310070.769ENSGACG00000014671EDC39956.140Gasterosteus_aculeatus
ENSMUSG00000038957Edc310096.923ENSGAGG00000023477EDC310087.598Gopherus_agassizii
ENSMUSG00000038957Edc310098.462ENSGGOG00000003552EDC310095.669Gorilla_gorilla
ENSMUSG00000038957Edc310072.308ENSHBUG00000020817EDC39958.090Haplochromis_burtoni
ENSMUSG00000038957Edc310078.947ENSHBUG00000003635edc310068.173Haplochromis_burtoni
ENSMUSG00000038957Edc39698.182ENSHGLG00000020876-10098.182Heterocephalus_glaber_female
ENSMUSG00000038957Edc39696.364ENSHGLG00100019573-10096.364Heterocephalus_glaber_male
ENSMUSG00000038957Edc310077.193ENSHCOG00000016834edc310067.710Hippocampus_comes
ENSMUSG00000038957Edc310076.923ENSIPUG00000005695edc310069.745Ictalurus_punctatus
ENSMUSG00000038957Edc310098.462ENSSTOG00000013936EDC310096.260Ictidomys_tridecemlineatus
ENSMUSG00000038957Edc310095.472ENSJJAG00000008074Edc310095.472Jaculus_jaculus
ENSMUSG00000038957Edc310089.474ENSJJAG00000012800-9184.375Jaculus_jaculus
ENSMUSG00000038957Edc310080.000ENSKMAG00000001243edc310068.762Kryptolebias_marmoratus
ENSMUSG00000038957Edc310072.308ENSKMAG00000001987EDC310055.906Kryptolebias_marmoratus
ENSMUSG00000038957Edc310078.462ENSLBEG00000013435edc39968.173Labrus_bergylta
ENSMUSG00000038957Edc310072.308ENSLBEG00000017984EDC310057.087Labrus_bergylta
ENSMUSG00000038957Edc310077.282ENSLACG00000014149EDC310077.282Latimeria_chalumnae
ENSMUSG00000038957Edc310078.462ENSLOCG00000014625edc39967.641Lepisosteus_oculatus
ENSMUSG00000038957Edc310096.923ENSLAFG00000002992EDC310093.701Loxodonta_africana
ENSMUSG00000038957Edc310098.462ENSMFAG00000043074EDC310095.866Macaca_fascicularis
ENSMUSG00000038957Edc310098.462ENSMMUG00000011071EDC310095.866Macaca_mulatta
ENSMUSG00000038957Edc310098.462ENSMNEG00000035316EDC310095.866Macaca_nemestrina
ENSMUSG00000038957Edc310098.462ENSMLEG00000030372EDC310096.063Mandrillus_leucophaeus
ENSMUSG00000038957Edc310067.692ENSMAMG00000005423-9956.836Mastacembelus_armatus
ENSMUSG00000038957Edc310080.000ENSMAMG00000000505edc310069.352Mastacembelus_armatus
ENSMUSG00000038957Edc310072.308ENSMZEG00005005654EDC39959.180Maylandia_zebra
ENSMUSG00000038957Edc310078.947ENSMZEG00005004892edc310068.173Maylandia_zebra
ENSMUSG00000038957Edc310096.923ENSMGAG00000002617EDC310087.008Meleagris_gallopavo
ENSMUSG00000038957Edc310096.923ENSMICG00000043190EDC310096.063Microcebus_murinus
ENSMUSG00000038957Edc310098.462ENSMOCG00000016205Edc310097.638Microtus_ochrogaster
ENSMUSG00000038957Edc310078.462ENSMMOG00000012278edc39968.307Mola_mola
ENSMUSG00000038957Edc310096.923ENSMODG00000009442EDC310091.732Monodelphis_domestica
ENSMUSG00000038957Edc310078.462ENSMALG00000008658edc310069.745Monopterus_albus
ENSMUSG00000038957Edc3100100.000MGP_CAROLIEiJ_G0032280Edc3100100.000Mus_caroli
ENSMUSG00000038957Edc3100100.000MGP_PahariEiJ_G0015146Edc3100100.000Mus_pahari
ENSMUSG00000038957Edc3100100.000MGP_SPRETEiJ_G0033420Edc3100100.000Mus_spretus
ENSMUSG00000038957Edc310096.923ENSMPUG00000017293EDC310094.685Mustela_putorius_furo
ENSMUSG00000038957Edc310096.923ENSMLUG00000016382EDC310094.706Myotis_lucifugus
ENSMUSG00000038957Edc3100100.000ENSNGAG00000010923Edc310096.654Nannospalax_galili
ENSMUSG00000038957Edc310072.308ENSNBRG00000007881EDC39958.789Neolamprologus_brichardi
ENSMUSG00000038957Edc310078.947ENSNBRG00000002434edc310067.976Neolamprologus_brichardi
ENSMUSG00000038957Edc310098.462ENSNLEG00000014577EDC310086.024Nomascus_leucogenys
ENSMUSG00000038957Edc310096.923ENSMEUG00000009077EDC310089.961Notamacropus_eugenii
ENSMUSG00000038957Edc39594.444ENSOPRG00000009540-7994.444Ochotona_princeps
ENSMUSG00000038957Edc39698.182ENSODEG00000020214-10098.182Octodon_degus
ENSMUSG00000038957Edc310072.308ENSONIG00000002932-9959.454Oreochromis_niloticus
ENSMUSG00000038957Edc310078.947ENSONIG00000008434edc310068.369Oreochromis_niloticus
ENSMUSG00000038957Edc310098.462ENSOANG00000030799-9580.392Ornithorhynchus_anatinus
ENSMUSG00000038957Edc310095.385ENSOCUG00000017740EDC38690.932Oryctolagus_cuniculus
ENSMUSG00000038957Edc310076.923ENSORLG00000004883edc310067.780Oryzias_latipes
ENSMUSG00000038957Edc310070.769ENSORLG00000014399-9856.055Oryzias_latipes
ENSMUSG00000038957Edc310070.769ENSORLG00020019446-10056.055Oryzias_latipes_hni
ENSMUSG00000038957Edc310076.923ENSORLG00020012262edc310067.583Oryzias_latipes_hni
ENSMUSG00000038957Edc310072.308ENSORLG00015017635-9656.055Oryzias_latipes_hsok
ENSMUSG00000038957Edc310076.923ENSORLG00015005634edc310067.780Oryzias_latipes_hsok
ENSMUSG00000038957Edc310076.923ENSOMEG00000014026edc310068.173Oryzias_melastigma
ENSMUSG00000038957Edc310070.769ENSOMEG00000017354EDC310055.469Oryzias_melastigma
ENSMUSG00000038957Edc310098.462ENSOGAG00000014441EDC310096.457Otolemur_garnettii
ENSMUSG00000038957Edc310098.462ENSOARG00000003476EDC310095.285Ovis_aries
ENSMUSG00000038957Edc310098.462ENSPPAG00000040143EDC310095.669Pan_paniscus
ENSMUSG00000038957Edc310096.923ENSPPRG00000006257EDC310094.685Panthera_pardus
ENSMUSG00000038957Edc310096.923ENSPTIG00000017424EDC310094.685Panthera_tigris_altaica
ENSMUSG00000038957Edc310098.462ENSPTRG00000007279EDC310095.669Pan_troglodytes
ENSMUSG00000038957Edc310098.462ENSPANG00000015997EDC310096.063Papio_anubis
ENSMUSG00000038957Edc310080.702ENSPKIG00000004416edc310070.312Paramormyrops_kingsleyae
ENSMUSG00000038957Edc310066.602ENSPKIG00000019810EDC310066.602Paramormyrops_kingsleyae
ENSMUSG00000038957Edc310092.308ENSPSIG00000008474EDC310082.677Pelodiscus_sinensis
ENSMUSG00000038957Edc310078.947ENSPMGG00000007223edc310066.732Periophthalmus_magnuspinnatus
ENSMUSG00000038957Edc310096.923ENSPEMG00000015260Edc310096.654Peromyscus_maniculatus_bairdii
ENSMUSG00000038957Edc310098.462ENSPCIG00000006276EDC37089.152Phascolarctos_cinereus
ENSMUSG00000038957Edc310078.462ENSPFOG00000012204edc310068.959Poecilia_formosa
ENSMUSG00000038957Edc310078.462ENSPLAG00000014420edc310068.959Poecilia_latipinna
ENSMUSG00000038957Edc310078.462ENSPMEG00000023289edc310068.959Poecilia_mexicana
ENSMUSG00000038957Edc310078.462ENSPREG00000016022edc310068.959Poecilia_reticulata
ENSMUSG00000038957Edc310098.462ENSPPYG00000006642EDC310094.488Pongo_abelii
ENSMUSG00000038957Edc39598.148ENSPCAG00000002802EDC38898.148Procavia_capensis
ENSMUSG00000038957Edc310098.462ENSPCOG00000013364EDC310095.866Propithecus_coquereli
ENSMUSG00000038957Edc310098.462ENSPVAG00000014733EDC310094.685Pteropus_vampyrus
ENSMUSG00000038957Edc310072.308ENSPNYG00000009669EDC39958.090Pundamilia_nyererei
ENSMUSG00000038957Edc310078.947ENSPNYG00000021797edc310068.173Pundamilia_nyererei
ENSMUSG00000038957Edc310080.000ENSPNAG00000019657edc310070.233Pygocentrus_nattereri
ENSMUSG00000038957Edc39998.814ENSRNOG00000019579Edc310098.814Rattus_norvegicus
ENSMUSG00000038957Edc310096.923ENSRBIG00000019488EDC310095.669Rhinopithecus_bieti
ENSMUSG00000038957Edc310096.923ENSRROG00000034959EDC310095.669Rhinopithecus_roxellana
ENSMUSG00000038957Edc310098.462ENSSBOG00000004896EDC310095.866Saimiri_boliviensis_boliviensis
ENSMUSG00000038957Edc310098.462ENSSHAG00000015075EDC39590.593Sarcophilus_harrisii
ENSMUSG00000038957Edc310078.462ENSSFOG00015016939edc310070.817Scleropages_formosus
ENSMUSG00000038957Edc310080.000ENSSFOG00015002439edc39077.273Scleropages_formosus
ENSMUSG00000038957Edc310070.769ENSSMAG00000010176-9956.385Scophthalmus_maximus
ENSMUSG00000038957Edc310076.923ENSSMAG00000010695edc310069.352Scophthalmus_maximus
ENSMUSG00000038957Edc310078.462ENSSDUG00000021844edc310068.369Seriola_dumerili
ENSMUSG00000038957Edc310073.846ENSSDUG00000007671EDC38973.134Seriola_dumerili
ENSMUSG00000038957Edc310078.947ENSSLDG00000008406-10078.947Seriola_lalandi_dorsalis
ENSMUSG00000038957Edc310078.462ENSSLDG00000022046edc310068.369Seriola_lalandi_dorsalis
ENSMUSG00000038957Edc310093.846ENSSARG00000003907EDC38096.774Sorex_araneus
ENSMUSG00000038957Edc310098.462ENSSPUG00000008232EDC310088.583Sphenodon_punctatus
ENSMUSG00000038957Edc310073.846ENSSPAG00000020327EDC310057.393Stegastes_partitus
ENSMUSG00000038957Edc310080.000ENSSPAG00000010009edc310069.745Stegastes_partitus
ENSMUSG00000038957Edc310098.462ENSSSCG00000001903EDC310095.866Sus_scrofa
ENSMUSG00000038957Edc310096.923ENSTGUG00000004007EDC310087.598Taeniopygia_guttata
ENSMUSG00000038957Edc310076.923ENSTRUG00000017078edc310069.941Takifugu_rubripes
ENSMUSG00000038957Edc310074.627ENSTNIG00000016047edc310067.515Tetraodon_nigroviridis
ENSMUSG00000038957Edc310098.462ENSTTRG00000007990EDC310094.882Tursiops_truncatus
ENSMUSG00000038957Edc310096.923ENSUAMG00000026710-10095.079Ursus_americanus
ENSMUSG00000038957Edc39696.364ENSUAMG00000002788-10096.364Ursus_americanus
ENSMUSG00000038957Edc310096.923ENSUMAG00000005006EDC39695.079Ursus_maritimus
ENSMUSG00000038957Edc39585.185ENSVPAG00000003499-7985.185Vicugna_pacos
ENSMUSG00000038957Edc310098.462ENSVVUG00000018601EDC310095.276Vulpes_vulpes
ENSMUSG00000038957Edc36881.897ENSXETG00000010622edc39983.046Xenopus_tropicalis
ENSMUSG00000038957Edc310078.462ENSXMAG00000007377edc310068.959Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000932P-body21873635.IBAComponent
GO:0003723RNA binding-IEAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005737cytoplasm-IEAComponent
GO:0031087deadenylation-independent decapping of nuclear-transcribed mRNA21873635.IBAProcess
GO:0033962cytoplasmic mRNA processing body assembly21873635.IBAProcess
GO:0036464cytoplasmic ribonucleoprotein granule-ISOComponent
GO:0042802identical protein binding-ISOFunction
GO:1990174phosphodiesterase decapping endonuclease activity-ISOFunction

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