EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000227325	-	4380	XM_006500588	ENSMUSP00000153863	1030 (aa)	XP_006500651	A0A2I3BPN6
ENSMUST00000154961	-	676	-	-	- (aa)	-	-
ENSMUST00000041618	-	4416	-	ENSMUSP00000038610	1042 (aa)	-	E9QAP7
ENSMUST00000155335	-	251	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu03022	Basal transcription factors	KEGG
mmu05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0001541	ovarian follicle development	11557891.	IMP	Process
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003677	DNA binding	18722179.	IDA	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0005515	protein binding	12665565.	IPI	Function
GO:0005634	nucleus	12665565.18722179.22323595.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005669	transcription factor TFIID complex	21873635.	IBA	Component
GO:0005669	transcription factor TFIID complex	14580349.	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006352	DNA-templated transcription, initiation	-	ISO	Process
GO:0006357	regulation of transcription by RNA polymerase II	11570813.	IDA	Process
GO:0006357	regulation of transcription by RNA polymerase II	11557891.	TAS	Process
GO:0006366	transcription by RNA polymerase II	11557891.	TAS	Process
GO:0006367	transcription initiation from RNA polymerase II promoter	-	ISO	Process
GO:0008134	transcription factor binding	21873635.	IBA	Function
GO:0017162	aryl hydrocarbon receptor binding	-	ISO	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0033276	transcription factor TFTC complex	-	ISO	Component
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0071339	MLL1 complex	-	ISO	Component