EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039148 (Gene tree)
Gene ID: 20227
Gene Symbol: Sart1
Alias: U5-110K
Full Name: squamous cell carcinoma antigen recognized by T cells 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 11181 bases
Position: chr19:5377523-5388703
Accession: 1309453
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000047397	SART-1	PF03343.13	3e-148	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000044207	-	5091	-	ENSMUSP00000047397	806 (aa)	-	Q9Z315

Gene Model

Click here to download ENSMUSG00000039148's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039148's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039148	Sart1	100	94.417	ENSG00000175467	SART1	100	94.417	Homo_sapiens
ENSMUSG00000039148	Sart1	87	92.593	ENSAMEG00000017260	SART1	98	94.049	Ailuropoda_melanoleuca
ENSMUSG00000039148	Sart1	100	92.689	ENSANAG00000037219	SART1	99	100.000	Aotus_nancymaae
ENSMUSG00000039148	Sart1	100	93.921	ENSBTAG00000003094	SART1	100	93.921	Bos_taurus
ENSMUSG00000039148	Sart1	100	92.937	ENSCJAG00000001741	SART1	100	93.556	Callithrix_jacchus
ENSMUSG00000039148	Sart1	100	93.921	ENSCAFG00000013103	SART1	100	93.921	Canis_familiaris
ENSMUSG00000039148	Sart1	100	94.417	ENSCAFG00020015337	SART1	100	94.417	Canis_lupus_dingo
ENSMUSG00000039148	Sart1	100	91.687	ENSCHIG00000016364	SART1	100	91.563	Capra_hircus
ENSMUSG00000039148	Sart1	87	83.926	ENSTSYG00000029994	SART1	91	84.638	Carlito_syrichta
ENSMUSG00000039148	Sart1	85	95.608	ENSCAPG00000016369	SART1	96	95.608	Cavia_aperea
ENSMUSG00000039148	Sart1	86	92.429	ENSCPOG00000020882	SART1	99	92.363	Cavia_porcellus
ENSMUSG00000039148	Sart1	100	92.937	ENSCCAG00000037852	SART1	99	100.000	Cebus_capucinus
ENSMUSG00000039148	Sart1	100	93.548	ENSCATG00000032953	SART1	99	100.000	Cercocebus_atys
ENSMUSG00000039148	Sart1	100	96.030	ENSCLAG00000016593	SART1	100	96.030	Chinchilla_lanigera
ENSMUSG00000039148	Sart1	100	94.169	ENSCSAG00000008081	SART1	100	93.797	Chlorocebus_sabaeus
ENSMUSG00000039148	Sart1	100	74.155	ENSCPBG00000023434	SART1	100	75.331	Chrysemys_picta_bellii
ENSMUSG00000039148	Sart1	99	35.714	ENSCING00000009048	-	81	39.429	Ciona_intestinalis
ENSMUSG00000039148	Sart1	94	35.258	ENSCSAVG00000009337	-	99	36.152	Ciona_savignyi
ENSMUSG00000039148	Sart1	94	86.614	ENSCANG00000043164	SART1	96	86.465	Colobus_angolensis_palliatus
ENSMUSG00000039148	Sart1	100	98.389	ENSCGRG00001021367	Sart1	100	98.389	Cricetulus_griseus_chok1gshd
ENSMUSG00000039148	Sart1	89	97.214	ENSCGRG00000015292	Sart1	99	97.214	Cricetulus_griseus_crigri
ENSMUSG00000039148	Sart1	100	64.303	ENSCVAG00000009800	SART1	100	64.699	Cyprinodon_variegatus
ENSMUSG00000039148	Sart1	51	89.976	ENSDNOG00000038920	-	89	92.933	Dasypus_novemcinctus
ENSMUSG00000039148	Sart1	84	82.249	ENSDNOG00000041860	-	100	82.988	Dasypus_novemcinctus
ENSMUSG00000039148	Sart1	100	87.021	ENSDORG00000011887	Sart1	100	86.725	Dipodomys_ordii
ENSMUSG00000039148	Sart1	85	40.428	FBgn0032388	CG6686	62	47.126	Drosophila_melanogaster
ENSMUSG00000039148	Sart1	66	54.419	ENSEBUG00000006203	SART1	57	61.272	Eptatretus_burgeri
ENSMUSG00000039148	Sart1	100	93.943	ENSEASG00005004465	SART1	100	94.314	Equus_asinus_asinus
ENSMUSG00000039148	Sart1	100	93.936	ENSECAG00000023491	TSGA10IP	93	93.936	Equus_caballus
ENSMUSG00000039148	Sart1	100	94.169	ENSFCAG00000013278	SART1	100	94.169	Felis_catus
ENSMUSG00000039148	Sart1	100	93.052	ENSFDAG00000008891	SART1	100	92.804	Fukomys_damarensis
ENSMUSG00000039148	Sart1	100	63.725	ENSFHEG00000010334	SART1	100	63.514	Fundulus_heteroclitus
ENSMUSG00000039148	Sart1	100	63.961	ENSGAFG00000013919	SART1	100	63.268	Gambusia_affinis
ENSMUSG00000039148	Sart1	99	62.069	ENSGACG00000016951	SART1	100	61.282	Gasterosteus_aculeatus
ENSMUSG00000039148	Sart1	100	74.393	ENSGAGG00000022783	SART1	100	76.300	Gopherus_agassizii
ENSMUSG00000039148	Sart1	100	94.293	ENSGGOG00000009457	SART1	99	100.000	Gorilla_gorilla
ENSMUSG00000039148	Sart1	56	52.889	ENSHBUG00000020412	-	68	52.889	Haplochromis_burtoni
ENSMUSG00000039148	Sart1	100	95.533	ENSHGLG00000015022	SART1	100	95.533	Heterocephalus_glaber_female
ENSMUSG00000039148	Sart1	100	94.541	ENSHGLG00100018346	SART1	100	94.293	Heterocephalus_glaber_male
ENSMUSG00000039148	Sart1	100	63.447	ENSHCOG00000007259	SART1	100	62.409	Hippocampus_comes
ENSMUSG00000039148	Sart1	100	65.725	ENSIPUG00000021117	sart1	100	65.560	Ictalurus_punctatus
ENSMUSG00000039148	Sart1	100	96.035	ENSSTOG00000023375	SART1	100	96.035	Ictidomys_tridecemlineatus
ENSMUSG00000039148	Sart1	100	95.545	ENSJJAG00000019103	Sart1	100	95.545	Jaculus_jaculus
ENSMUSG00000039148	Sart1	82	66.267	ENSLACG00000011165	SART1	52	71.848	Latimeria_chalumnae
ENSMUSG00000039148	Sart1	60	71.162	ENSLOCG00000001871	SART1	95	71.784	Lepisosteus_oculatus
ENSMUSG00000039148	Sart1	99	92.403	ENSLAFG00000001768	SART1	100	92.777	Loxodonta_africana
ENSMUSG00000039148	Sart1	100	93.672	ENSMFAG00000002484	SART1	99	100.000	Macaca_fascicularis
ENSMUSG00000039148	Sart1	66	100.000	ENSMMUG00000008065	SART1	99	100.000	Macaca_mulatta
ENSMUSG00000039148	Sart1	100	93.672	ENSMNEG00000035507	SART1	99	100.000	Macaca_nemestrina
ENSMUSG00000039148	Sart1	91	93.878	ENSMLEG00000036259	SART1	100	93.878	Mandrillus_leucophaeus
ENSMUSG00000039148	Sart1	100	98.015	ENSMAUG00000016274	Sart1	100	98.015	Mesocricetus_auratus
ENSMUSG00000039148	Sart1	100	93.951	ENSMICG00000030096	SART1	100	93.951	Microcebus_murinus
ENSMUSG00000039148	Sart1	100	98.263	ENSMOCG00000019815	Sart1	100	98.263	Microtus_ochrogaster
ENSMUSG00000039148	Sart1	90	67.995	ENSMMOG00000004019	SART1	98	65.963	Mola_mola
ENSMUSG00000039148	Sart1	100	76.614	ENSMODG00000009047	SART1	100	76.492	Monodelphis_domestica
ENSMUSG00000039148	Sart1	100	99.628	MGP_CAROLIEiJ_G0022545	Sart1	100	99.628	Mus_caroli
ENSMUSG00000039148	Sart1	100	99.007	MGP_PahariEiJ_G0014042	Sart1	100	99.007	Mus_pahari
ENSMUSG00000039148	Sart1	100	100.000	MGP_SPRETEiJ_G0023459	Sart1	100	100.000	Mus_spretus
ENSMUSG00000039148	Sart1	100	93.921	ENSMPUG00000011394	SART1	100	93.921	Mustela_putorius_furo
ENSMUSG00000039148	Sart1	100	92.251	ENSMLUG00000011078	SART1	100	92.565	Myotis_lucifugus
ENSMUSG00000039148	Sart1	100	92.689	ENSNGAG00000004727	Sart1	100	92.689	Nannospalax_galili
ENSMUSG00000039148	Sart1	100	89.950	ENSNLEG00000005961	SART1	100	100.000	Nomascus_leucogenys
ENSMUSG00000039148	Sart1	100	80.661	ENSMEUG00000004918	SART1	100	80.539	Notamacropus_eugenii
ENSMUSG00000039148	Sart1	100	96.030	ENSODEG00000017777	SART1	100	96.030	Octodon_degus
ENSMUSG00000039148	Sart1	100	64.400	ENSONIG00000021283	SART1	100	64.400	Oreochromis_niloticus
ENSMUSG00000039148	Sart1	100	61.928	ENSORLG00000028400	SART1	100	62.005	Oryzias_latipes
ENSMUSG00000039148	Sart1	100	61.681	ENSORLG00020014721	SART1	100	61.757	Oryzias_latipes_hni
ENSMUSG00000039148	Sart1	100	61.928	ENSORLG00015014467	SART1	100	62.252	Oryzias_latipes_hsok
ENSMUSG00000039148	Sart1	100	62.917	ENSOMEG00000002508	SART1	100	62.670	Oryzias_melastigma
ENSMUSG00000039148	Sart1	100	93.680	ENSOGAG00000016523	SART1	100	93.928	Otolemur_garnettii
ENSMUSG00000039148	Sart1	87	91.453	ENSOARG00000000694	SART1	98	91.437	Ovis_aries
ENSMUSG00000039148	Sart1	100	94.789	ENSPPAG00000030167	SART1	100	100.000	Pan_paniscus
ENSMUSG00000039148	Sart1	100	91.191	ENSPPRG00000015794	SART1	100	92.556	Panthera_pardus
ENSMUSG00000039148	Sart1	68	92.814	ENSPTIG00000017833	SART1	96	72.364	Panthera_tigris_altaica
ENSMUSG00000039148	Sart1	100	94.789	ENSPTRG00000003905	SART1	100	100.000	Pan_troglodytes
ENSMUSG00000039148	Sart1	100	93.548	ENSPANG00000023502	SART1	99	100.000	Papio_anubis
ENSMUSG00000039148	Sart1	91	78.220	ENSPSIG00000002712	SART1	94	77.373	Pelodiscus_sinensis
ENSMUSG00000039148	Sart1	100	90.447	ENSPEMG00000012166	Sart1	94	97.590	Peromyscus_maniculatus_bairdii
ENSMUSG00000039148	Sart1	100	86.903	ENSPCIG00000008311	SART1	100	86.536	Phascolarctos_cinereus
ENSMUSG00000039148	Sart1	100	64.496	ENSPFOG00000019883	SART1	100	64.005	Poecilia_formosa
ENSMUSG00000039148	Sart1	100	64.619	ENSPLAG00000019633	SART1	100	64.128	Poecilia_latipinna
ENSMUSG00000039148	Sart1	100	64.373	ENSPMEG00000013621	SART1	100	63.882	Poecilia_mexicana
ENSMUSG00000039148	Sart1	100	62.977	ENSPREG00000000100	SART1	100	62.408	Poecilia_reticulata
ENSMUSG00000039148	Sart1	100	91.811	ENSPPYG00000003039	SART1	100	91.811	Pongo_abelii
ENSMUSG00000039148	Sart1	73	98.684	ENSPCAG00000011262	SART1	73	98.684	Procavia_capensis
ENSMUSG00000039148	Sart1	100	92.680	ENSPCOG00000008448	SART1	100	93.797	Propithecus_coquereli
ENSMUSG00000039148	Sart1	100	87.500	ENSPVAG00000016969	SART1	100	87.376	Pteropus_vampyrus
ENSMUSG00000039148	Sart1	100	64.524	ENSPNYG00000014765	SART1	100	64.648	Pundamilia_nyererei
ENSMUSG00000039148	Sart1	100	98.885	ENSRNOG00000020475	Sart1	100	98.885	Rattus_norvegicus
ENSMUSG00000039148	Sart1	100	92.680	ENSRBIG00000044079	SART1	99	100.000	Rhinopithecus_bieti
ENSMUSG00000039148	Sart1	100	92.680	ENSRROG00000045251	SART1	99	100.000	Rhinopithecus_roxellana
ENSMUSG00000039148	Sart1	100	92.813	ENSSBOG00000023102	SART1	100	100.000	Saimiri_boliviensis_boliviensis
ENSMUSG00000039148	Sart1	100	83.231	ENSSHAG00000011437	SART1	100	83.477	Sarcophilus_harrisii
ENSMUSG00000039148	Sart1	100	61.002	ENSSFOG00015018792	SART1	100	60.934	Scleropages_formosus
ENSMUSG00000039148	Sart1	100	62.637	ENSSMAG00000001043	SART1	100	61.772	Scophthalmus_maximus
ENSMUSG00000039148	Sart1	91	68.980	ENSSDUG00000019131	SART1	99	66.195	Seriola_dumerili
ENSMUSG00000039148	Sart1	100	65.019	ENSSLDG00000024307	SART1	100	64.409	Seriola_lalandi_dorsalis
ENSMUSG00000039148	Sart1	100	76.063	ENSSPUG00000009399	SART1	100	76.300	Sphenodon_punctatus
ENSMUSG00000039148	Sart1	100	65.266	ENSSPAG00000013156	SART1	100	64.851	Stegastes_partitus
ENSMUSG00000039148	Sart1	100	93.921	ENSSSCG00000012963	SART1	100	93.921	Sus_scrofa
ENSMUSG00000039148	Sart1	100	62.840	ENSTRUG00000025047	SART1	100	61.491	Takifugu_rubripes
ENSMUSG00000039148	Sart1	71	71.007	ENSTBEG00000010370	-	97	70.683	Tupaia_belangeri
ENSMUSG00000039148	Sart1	79	100.000	ENSTBEG00000010864	-	65	100.000	Tupaia_belangeri
ENSMUSG00000039148	Sart1	99	69.183	ENSTBEG00000002397	-	99	68.936	Tupaia_belangeri
ENSMUSG00000039148	Sart1	100	89.219	ENSTTRG00000008751	SART1	100	89.343	Tursiops_truncatus
ENSMUSG00000039148	Sart1	100	87.097	ENSUAMG00000020770	SART1	100	89.082	Ursus_americanus
ENSMUSG00000039148	Sart1	73	91.327	ENSUMAG00000010903	SART1	91	91.327	Ursus_maritimus
ENSMUSG00000039148	Sart1	100	94.665	ENSVVUG00000027041	SART1	100	94.665	Vulpes_vulpes
ENSMUSG00000039148	Sart1	89	72.462	ENSXETG00000011429	sart1	100	69.297	Xenopus_tropicalis
ENSMUSG00000039148	Sart1	100	64.619	ENSXCOG00000005296	SART1	100	64.128	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0000481	maturation of 5S rRNA	21873635.	IBA	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0015030	Cajal body	-	ISO	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0045585	positive regulation of cytotoxic T cell differentiation	-	ISO	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component