EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039209 (Gene tree)
Gene ID: 68172
Gene Symbol: Rpl39l
Alias: 4930517K11Rik
Full Name: ribosomal protein L39-like
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 4686 bases
Position: chr16:10170226-10174911
Accession: 1915422
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000041794	Ribosomal_L39	PF00832.20	4.9e-23	1	1
ENSMUSP00000112791	Ribosomal_L39	PF00832.20	4.9e-23	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000044103	-	805	-	ENSMUSP00000041794	51 (aa)	-	Q9CQD0
ENSMUST00000121292	-	550	XM_006522506	ENSMUSP00000112791	51 (aa)	XP_006522569	Q9CQD0

Gene Model

Click here to download ENSMUSG00000039209's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039209's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000039209	Rpl39l	100	94.118	ENSMUSG00000079641	Rpl39	100	94.118

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039209	Rpl39l	100	96.078	ENSAMEG00000019848	-	100	96.078	Ailuropoda_melanoleuca
ENSMUSG00000039209	Rpl39l	100	94.118	ENSANAG00000016046	-	100	94.118	Aotus_nancymaae
ENSMUSG00000039209	Rpl39l	100	96.078	ENSANAG00000031418	-	100	96.078	Aotus_nancymaae
ENSMUSG00000039209	Rpl39l	100	88.235	ENSANAG00000016436	-	100	88.235	Aotus_nancymaae
ENSMUSG00000039209	Rpl39l	100	94.118	ENSCAFG00020026664	-	100	94.118	Canis_lupus_dingo
ENSMUSG00000039209	Rpl39l	100	92.157	ENSCAFG00020023883	-	100	92.157	Canis_lupus_dingo
ENSMUSG00000039209	Rpl39l	100	92.157	ENSCAFG00020002578	-	100	92.157	Canis_lupus_dingo
ENSMUSG00000039209	Rpl39l	100	94.118	ENSCAFG00020009904	-	100	94.118	Canis_lupus_dingo
ENSMUSG00000039209	Rpl39l	100	88.235	ENSCAFG00020027515	-	100	88.235	Canis_lupus_dingo
ENSMUSG00000039209	Rpl39l	90	89.130	ENSTSYG00000026787	-	82	89.130	Carlito_syrichta
ENSMUSG00000039209	Rpl39l	100	94.118	ENSTSYG00000026785	-	100	94.118	Carlito_syrichta
ENSMUSG00000039209	Rpl39l	100	96.078	ENSCAPG00000007210	-	100	96.078	Cavia_aperea
ENSMUSG00000039209	Rpl39l	100	96.078	ENSCPOG00000036636	-	100	96.078	Cavia_porcellus
ENSMUSG00000039209	Rpl39l	100	90.196	ENSCLAG00000017707	-	100	90.196	Chinchilla_lanigera
ENSMUSG00000039209	Rpl39l	100	94.118	ENSCLAG00000017874	-	100	94.118	Chinchilla_lanigera
ENSMUSG00000039209	Rpl39l	100	84.314	ENSCGRG00001008057	-	100	84.314	Cricetulus_griseus_chok1gshd
ENSMUSG00000039209	Rpl39l	100	92.157	ENSCGRG00001012052	-	100	92.157	Cricetulus_griseus_chok1gshd
ENSMUSG00000039209	Rpl39l	100	98.039	ENSCGRG00001003230	Rpl39l	100	98.039	Cricetulus_griseus_chok1gshd
ENSMUSG00000039209	Rpl39l	100	98.039	ENSCGRG00000018615	Rpl39l	100	98.039	Cricetulus_griseus_crigri
ENSMUSG00000039209	Rpl39l	100	92.157	ENSCGRG00000019654	-	100	92.157	Cricetulus_griseus_crigri
ENSMUSG00000039209	Rpl39l	100	94.118	ENSDORG00000028485	-	100	94.118	Dipodomys_ordii
ENSMUSG00000039209	Rpl39l	100	92.157	ENSDORG00000027732	-	100	92.157	Dipodomys_ordii
ENSMUSG00000039209	Rpl39l	100	71.154	ENSFCAG00000038709	-	91	71.154	Felis_catus
ENSMUSG00000039209	Rpl39l	100	80.392	ENSFCAG00000044333	RPL39L	100	80.392	Felis_catus
ENSMUSG00000039209	Rpl39l	100	96.078	ENSFDAG00000021400	-	100	96.078	Fukomys_damarensis
ENSMUSG00000039209	Rpl39l	100	88.235	ENSGGOG00000036596	-	100	88.235	Gorilla_gorilla
ENSMUSG00000039209	Rpl39l	92	91.489	ENSGGOG00000040312	-	65	91.489	Gorilla_gorilla
ENSMUSG00000039209	Rpl39l	100	92.157	ENSHGLG00000020604	-	100	92.157	Heterocephalus_glaber_female
ENSMUSG00000039209	Rpl39l	100	92.157	ENSHGLG00100011216	-	100	92.157	Heterocephalus_glaber_male
ENSMUSG00000039209	Rpl39l	100	96.078	ENSSTOG00000030492	-	100	96.078	Ictidomys_tridecemlineatus
ENSMUSG00000039209	Rpl39l	100	94.118	ENSSTOG00000028051	-	100	94.118	Ictidomys_tridecemlineatus
ENSMUSG00000039209	Rpl39l	100	88.235	ENSJJAG00000010041	-	100	88.235	Jaculus_jaculus
ENSMUSG00000039209	Rpl39l	100	92.157	ENSLAFG00000028648	-	100	92.157	Loxodonta_africana
ENSMUSG00000039209	Rpl39l	100	94.118	ENSMFAG00000020492	-	100	94.118	Macaca_fascicularis
ENSMUSG00000039209	Rpl39l	100	96.078	ENSMMUG00000044527	-	100	96.078	Macaca_mulatta
ENSMUSG00000039209	Rpl39l	100	92.157	ENSMMUG00000038479	-	100	92.157	Macaca_mulatta
ENSMUSG00000039209	Rpl39l	100	94.118	ENSMMUG00000045452	-	100	94.118	Macaca_mulatta
ENSMUSG00000039209	Rpl39l	100	88.235	ENSMNEG00000001683	-	68	88.235	Macaca_nemestrina
ENSMUSG00000039209	Rpl39l	100	94.118	ENSMNEG00000000126	-	100	94.118	Macaca_nemestrina
ENSMUSG00000039209	Rpl39l	98	94.000	ENSMLEG00000000739	-	100	94.000	Mandrillus_leucophaeus
ENSMUSG00000039209	Rpl39l	100	90.196	ENSMLEG00000009433	-	100	90.196	Mandrillus_leucophaeus
ENSMUSG00000039209	Rpl39l	100	96.078	ENSMLEG00000003517	-	100	96.078	Mandrillus_leucophaeus
ENSMUSG00000039209	Rpl39l	100	94.118	ENSMLEG00000018088	-	100	94.118	Mandrillus_leucophaeus
ENSMUSG00000039209	Rpl39l	100	90.196	ENSMAUG00000002516	-	100	90.196	Mesocricetus_auratus
ENSMUSG00000039209	Rpl39l	100	98.039	ENSMAUG00000015776	Rpl39l	100	98.039	Mesocricetus_auratus
ENSMUSG00000039209	Rpl39l	100	96.078	ENSMOCG00000001545	Rpl39l	100	96.078	Microtus_ochrogaster
ENSMUSG00000039209	Rpl39l	100	96.078	ENSMOCG00000002138	-	100	96.078	Microtus_ochrogaster
ENSMUSG00000039209	Rpl39l	100	100.000	MGP_CAROLIEiJ_G0020438	Rpl39l	100	100.000	Mus_caroli
ENSMUSG00000039209	Rpl39l	100	100.000	MGP_SPRETEiJ_G0021332	Rpl39l	100	100.000	Mus_spretus
ENSMUSG00000039209	Rpl39l	100	90.196	ENSMLUG00000015029	-	100	90.196	Myotis_lucifugus
ENSMUSG00000039209	Rpl39l	100	90.196	ENSMLUG00000025012	-	100	90.196	Myotis_lucifugus
ENSMUSG00000039209	Rpl39l	90	89.130	ENSNGAG00000022494	-	96	89.130	Nannospalax_galili
ENSMUSG00000039209	Rpl39l	100	94.118	ENSNGAG00000012570	Rpl39l	100	94.118	Nannospalax_galili
ENSMUSG00000039209	Rpl39l	100	86.275	ENSNGAG00000008665	-	100	86.275	Nannospalax_galili
ENSMUSG00000039209	Rpl39l	100	94.118	ENSODEG00000020114	-	100	94.118	Octodon_degus
ENSMUSG00000039209	Rpl39l	100	92.157	ENSOGAG00000024799	-	100	92.157	Otolemur_garnettii
ENSMUSG00000039209	Rpl39l	100	86.275	ENSPPRG00000020779	-	100	86.275	Panthera_pardus
ENSMUSG00000039209	Rpl39l	100	88.235	ENSPTIG00000006209	-	100	88.235	Panthera_tigris_altaica
ENSMUSG00000039209	Rpl39l	98	94.000	ENSPANG00000030226	-	100	94.000	Papio_anubis
ENSMUSG00000039209	Rpl39l	100	100.000	ENSRNOG00000032300	Rpl39l	100	100.000	Rattus_norvegicus
ENSMUSG00000039209	Rpl39l	100	94.118	ENSRBIG00000010842	-	100	94.118	Rhinopithecus_bieti
ENSMUSG00000039209	Rpl39l	100	94.118	ENSRROG00000037724	-	100	94.118	Rhinopithecus_roxellana
ENSMUSG00000039209	Rpl39l	100	94.118	ENSRROG00000023025	-	100	94.118	Rhinopithecus_roxellana
ENSMUSG00000039209	Rpl39l	100	84.314	ENSSSCG00000033224	-	100	84.314	Sus_scrofa
ENSMUSG00000039209	Rpl39l	100	90.196	ENSSSCG00000038385	-	69	90.196	Sus_scrofa
ENSMUSG00000039209	Rpl39l	100	96.078	ENSUAMG00000020990	-	100	96.078	Ursus_americanus
ENSMUSG00000039209	Rpl39l	90	91.304	ENSUAMG00000000067	-	98	91.304	Ursus_americanus
ENSMUSG00000039209	Rpl39l	100	96.078	ENSUMAG00000015280	-	100	96.078	Ursus_maritimus
ENSMUSG00000039209	Rpl39l	100	86.275	ENSVVUG00000014095	-	100	86.275	Vulpes_vulpes
ENSMUSG00000039209	Rpl39l	100	96.078	ENSVVUG00000030147	-	100	96.078	Vulpes_vulpes
ENSMUSG00000039209	Rpl39l	98	92.000	ENSVVUG00000022951	-	100	92.000	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component