EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039218 (Gene tree)
Gene ID: 75956
Gene Symbol: Srrm2
Alias: 5033413A03Rik|SRm300
Full Name: serine/arginine repetitive matrix 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 34210 bases
Position: chr17:23790532-23824741
Accession: 1923206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000140813	cwf21	PF08312.12	4.7e-11	1	1
ENSMUSP00000156661	cwf21	PF08312.12	5.9e-11	1	1
ENSMUSP00000139842	cwf21	PF08312.12	1.7e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000191385	-	459	-	ENSMUSP00000139901	88 (aa)	-	A0A087WPS9
ENSMUST00000189977	-	2092	-	-	- (aa)	-	-
ENSMUST00000190293	-	431	-	-	- (aa)	-	-
ENSMUST00000186914	-	2991	-	-	- (aa)	-	-
ENSMUST00000186045	-	494	-	ENSMUSP00000139914	34 (aa)	-	A0A087WPU0
ENSMUST00000186961	-	950	-	ENSMUSP00000140813	171 (aa)	-	A0A087WRX8
ENSMUST00000180975	-	2266	-	-	- (aa)	-	-
ENSMUST00000190686	-	8864	XM_006525076	ENSMUSP00000139842	2703 (aa)	XP_006525139	Q8BTI8
ENSMUST00000088621	-	8564	-	ENSMUSP00000085993	2607 (aa)	-	Q8BTI8
ENSMUST00000186259	-	647	-	ENSMUSP00000140531	105 (aa)	-	A0A087WR98
ENSMUST00000190568	-	597	-	-	- (aa)	-	-
ENSMUST00000233636	-	678	-	ENSMUSP00000156661	191 (aa)	-	UPI00004F9992

Gene Model

Click here to download ENSMUSG00000039218's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039218's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000039218	Srrm2	70	49.580	ENSMUSG00000039860	Srrm3	89	50.833

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039218	Srrm2	100	97.661	ENSG00000167978	SRRM2	100	98.261	Homo_sapiens
ENSMUSG00000039218	Srrm2	100	97.661	ENSAMEG00000018018	SRRM2	69	77.131	Ailuropoda_melanoleuca
ENSMUSG00000039218	Srrm2	88	58.824	ENSACIG00000023341	-	88	57.143	Amphilophus_citrinellus
ENSMUSG00000039218	Srrm2	100	97.661	ENSANAG00000034911	SRRM2	67	93.514	Aotus_nancymaae
ENSMUSG00000039218	Srrm2	89	58.065	ENSAMXG00000038994	-	97	50.244	Astyanax_mexicanus
ENSMUSG00000039218	Srrm2	100	97.076	ENSBTAG00000012683	SRRM2	91	71.508	Bos_taurus
ENSMUSG00000039218	Srrm2	100	97.661	ENSCJAG00000015354	SRRM2	68	77.075	Callithrix_jacchus
ENSMUSG00000039218	Srrm2	100	97.661	ENSCAFG00000019346	SRRM2	68	76.547	Canis_familiaris
ENSMUSG00000039218	Srrm2	100	97.661	ENSCAFG00020025919	SRRM2	68	76.547	Canis_lupus_dingo
ENSMUSG00000039218	Srrm2	100	97.076	ENSCHIG00000011257	SRRM2	68	78.515	Capra_hircus
ENSMUSG00000039218	Srrm2	100	98.246	ENSTSYG00000032523	SRRM2	69	77.818	Carlito_syrichta
ENSMUSG00000039218	Srrm2	100	97.661	ENSCCAG00000031601	SRRM2	68	77.346	Cebus_capucinus
ENSMUSG00000039218	Srrm2	100	97.661	ENSCATG00000038003	SRRM2	68	77.979	Cercocebus_atys
ENSMUSG00000039218	Srrm2	100	97.661	ENSCSAG00000010365	SRRM2	68	77.876	Chlorocebus_sabaeus
ENSMUSG00000039218	Srrm2	91	78.344	ENSCPBG00000005984	-	95	76.891	Chrysemys_picta_bellii
ENSMUSG00000039218	Srrm2	100	97.661	ENSCANG00000029659	SRRM2	68	77.979	Colobus_angolensis_palliatus
ENSMUSG00000039218	Srrm2	100	97.382	ENSCGRG00001012503	Srrm2	68	90.664	Cricetulus_griseus_chok1gshd
ENSMUSG00000039218	Srrm2	100	97.382	ENSCGRG00000016285	Srrm2	68	90.556	Cricetulus_griseus_crigri
ENSMUSG00000039218	Srrm2	88	59.091	ENSCSEG00000009971	-	94	51.515	Cynoglossus_semilaevis
ENSMUSG00000039218	Srrm2	100	97.076	ENSDNOG00000048469	SRRM2	68	78.594	Dasypus_novemcinctus
ENSMUSG00000039218	Srrm2	100	97.076	ENSETEG00000019959	SRRM2	62	89.498	Echinops_telfairi
ENSMUSG00000039218	Srrm2	100	97.661	ENSEASG00005006019	SRRM2	70	79.855	Equus_asinus_asinus
ENSMUSG00000039218	Srrm2	100	97.661	ENSECAG00000011612	SRRM2	67	73.161	Equus_caballus
ENSMUSG00000039218	Srrm2	100	97.661	ENSFCAG00000004709	SRRM2	67	77.169	Felis_catus
ENSMUSG00000039218	Srrm2	91	70.186	ENSGALG00000047953	-	74	66.327	Gallus_gallus
ENSMUSG00000039218	Srrm2	72	43.200	ENSGACG00000020232	-	77	37.681	Gasterosteus_aculeatus
ENSMUSG00000039218	Srrm2	100	97.661	ENSGGOG00000015296	SRRM2	68	77.720	Gorilla_gorilla
ENSMUSG00000039218	Srrm2	56	55.208	ENSHGLG00100004269	-	59	68.182	Heterocephalus_glaber_male
ENSMUSG00000039218	Srrm2	100	97.661	ENSSTOG00000025810	SRRM2	67	74.828	Ictidomys_tridecemlineatus
ENSMUSG00000039218	Srrm2	88	58.710	ENSLBEG00000007729	-	86	57.407	Labrus_bergylta
ENSMUSG00000039218	Srrm2	100	97.661	ENSMFAG00000003406	SRRM2	68	78.083	Macaca_fascicularis
ENSMUSG00000039218	Srrm2	100	97.661	ENSMMUG00000018858	SRRM2	73	78.187	Macaca_mulatta
ENSMUSG00000039218	Srrm2	100	97.661	ENSMNEG00000042677	SRRM2	68	77.979	Macaca_nemestrina
ENSMUSG00000039218	Srrm2	100	97.661	ENSMLEG00000041906	SRRM2	68	77.927	Mandrillus_leucophaeus
ENSMUSG00000039218	Srrm2	100	97.076	ENSMAUG00000014041	Srrm2	68	85.056	Mesocricetus_auratus
ENSMUSG00000039218	Srrm2	100	97.076	ENSMICG00000046582	SRRM2	68	77.934	Microcebus_murinus
ENSMUSG00000039218	Srrm2	100	97.906	ENSMOCG00000022507	Srrm2	63	86.995	Microtus_ochrogaster
ENSMUSG00000039218	Srrm2	100	97.076	ENSMODG00000016533	SRRM2	95	79.702	Monodelphis_domestica
ENSMUSG00000039218	Srrm2	100	100.000	MGP_CAROLIEiJ_G0021161	Srrm2	100	100.000	Mus_caroli
ENSMUSG00000039218	Srrm2	100	98.953	MGP_PahariEiJ_G0023478	Srrm2	100	98.830	Mus_pahari
ENSMUSG00000039218	Srrm2	100	100.000	MGP_SPRETEiJ_G0022071	Srrm2	100	100.000	Mus_spretus
ENSMUSG00000039218	Srrm2	100	97.661	ENSMPUG00000015264	SRRM2	68	76.143	Mustela_putorius_furo
ENSMUSG00000039218	Srrm2	100	98.429	ENSNGAG00000021633	Srrm2	68	84.483	Nannospalax_galili
ENSMUSG00000039218	Srrm2	57	54.639	ENSNGAG00000005825	-	72	54.639	Nannospalax_galili
ENSMUSG00000039218	Srrm2	100	97.661	ENSNLEG00000009466	SRRM2	93	86.475	Nomascus_leucogenys
ENSMUSG00000039218	Srrm2	100	97.076	ENSODEG00000013605	SRRM2	66	74.773	Octodon_degus
ENSMUSG00000039218	Srrm2	100	97.076	ENSOGAG00000032989	SRRM2	69	76.867	Otolemur_garnettii
ENSMUSG00000039218	Srrm2	95	95.679	ENSOARG00000000491	SRRM2	68	74.961	Ovis_aries
ENSMUSG00000039218	Srrm2	100	97.661	ENSPPAG00000032551	SRRM2	86	86.667	Pan_paniscus
ENSMUSG00000039218	Srrm2	100	97.661	ENSPTRG00000042918	-	86	86.667	Pan_troglodytes
ENSMUSG00000039218	Srrm2	100	97.661	ENSPTRG00000007662	SRRM2	86	86.667	Pan_troglodytes
ENSMUSG00000039218	Srrm2	100	97.661	ENSPANG00000016966	SRRM2	68	77.979	Papio_anubis
ENSMUSG00000039218	Srrm2	88	61.688	ENSPMGG00000000733	-	96	53.234	Periophthalmus_magnuspinnatus
ENSMUSG00000039218	Srrm2	100	97.906	ENSPEMG00000011170	Srrm2	68	91.523	Peromyscus_maniculatus_bairdii
ENSMUSG00000039218	Srrm2	100	97.661	ENSPPYG00000007012	SRRM2	68	77.824	Pongo_abelii
ENSMUSG00000039218	Srrm2	100	87.719	ENSPCAG00000009687	-	75	76.478	Procavia_capensis
ENSMUSG00000039218	Srrm2	100	97.076	ENSPCOG00000016593	SRRM2	68	77.975	Propithecus_coquereli
ENSMUSG00000039218	Srrm2	76	49.231	ENSPNYG00000009463	-	93	42.373	Pundamilia_nyererei
ENSMUSG00000039218	Srrm2	89	58.065	ENSPNAG00000018911	-	95	51.741	Pygocentrus_nattereri
ENSMUSG00000039218	Srrm2	100	98.429	ENSRNOG00000058561	Srrm2	68	94.902	Rattus_norvegicus
ENSMUSG00000039218	Srrm2	100	97.661	ENSRBIG00000033934	SRRM2	67	80.329	Rhinopithecus_bieti
ENSMUSG00000039218	Srrm2	100	97.661	ENSRROG00000030979	SRRM2	70	78.187	Rhinopithecus_roxellana
ENSMUSG00000039218	Srrm2	100	97.661	ENSSBOG00000024771	SRRM2	66	96.571	Saimiri_boliviensis_boliviensis
ENSMUSG00000039218	Srrm2	100	96.491	ENSSHAG00000017712	SRRM2	95	79.296	Sarcophilus_harrisii
ENSMUSG00000039218	Srrm2	96	52.062	ENSSLDG00000003595	-	83	51.485	Seriola_lalandi_dorsalis
ENSMUSG00000039218	Srrm2	60	98.765	ENSSARG00000013728	SRRM2	61	98.765	Sorex_araneus
ENSMUSG00000039218	Srrm2	68	73.504	ENSSPUG00000003428	-	100	73.504	Sphenodon_punctatus
ENSMUSG00000039218	Srrm2	72	89.919	ENSTBEG00000006307	-	62	97.980	Tupaia_belangeri
ENSMUSG00000039218	Srrm2	100	97.076	ENSTTRG00000015432	SRRM2	56	97.076	Tursiops_truncatus
ENSMUSG00000039218	Srrm2	54	55.914	ENSUAMG00000011337	-	58	45.161	Ursus_americanus
ENSMUSG00000039218	Srrm2	100	97.661	ENSUMAG00000000726	SRRM2	91	73.108	Ursus_maritimus
ENSMUSG00000039218	Srrm2	100	97.661	ENSVVUG00000008770	SRRM2	92	76.559	Vulpes_vulpes
ENSMUSG00000039218	Srrm2	88	59.477	ENSXCOG00000000148	-	96	51.500	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0008380	RNA splicing	-	IEA	Process