EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039219 (Gene tree)
Gene ID: 94246
Gene Symbol: Arid4b
Alias: 6330417L24Rik|6720480E17Rik|BRCAA1|RBBP1L1|Rbp1l1|SAP180
Full Name: AT rich interactive domain 4B (RBP1-like)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 136372 bases
Position: chr13:14063232-14199603
Accession: 2137512
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000106163	Tudor-knot	PF11717.8	4.4e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000129488	-	1802	-	ENSMUSP00000118687	540 (aa)	-	Z4YMH1
ENSMUST00000155553	-	571	-	-	- (aa)	-	-
ENSMUST00000149579	-	4571	-	-	- (aa)	-	-
ENSMUST00000222928	-	815	-	ENSMUSP00000152177	128 (aa)	-	A0A1Y7VIX3
ENSMUST00000110534	-	5864	XM_006516806	ENSMUSP00000106163	1314 (aa)	XP_006516869	A2CG63
ENSMUST00000039538	-	5844	-	ENSMUSP00000043889	1227 (aa)	-	A2CG63
ENSMUST00000148941	-	4828	-	-	- (aa)	-	-
ENSMUST00000110533	-	3020	-	ENSMUSP00000106162	473 (aa)	-	Z4YL44
ENSMUST00000151151	-	745	-	ENSMUSP00000152798	31 (aa)	-	A0A1Y7VKA9
ENSMUST00000222346	-	3353	-	-	- (aa)	-	-
ENSMUST00000151182	-	678	-	-	- (aa)	-	-
ENSMUST00000110536	-	5783	-	ENSMUSP00000106165	1227 (aa)	-	A2CG63

Gene Model

Click here to download ENSMUSG00000039219's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039219's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039219	Arid4b	100	88.669	ENSG00000054267	ARID4B	100	93.168	Homo_sapiens
ENSMUSG00000039219	Arid4b	99	88.584	ENSAMEG00000008801	ARID4B	100	88.128	Ailuropoda_melanoleuca
ENSMUSG00000039219	Arid4b	64	72.816	ENSACIG00000006313	tomm20a	98	72.087	Amphilophus_citrinellus
ENSMUSG00000039219	Arid4b	100	75.207	ENSAPLG00000004422	ARID4B	100	75.433	Anas_platyrhynchos
ENSMUSG00000039219	Arid4b	99	70.963	ENSACAG00000001289	ARID4B	100	71.721	Anolis_carolinensis
ENSMUSG00000039219	Arid4b	100	89.278	ENSANAG00000038088	ARID4B	100	89.125	Aotus_nancymaae
ENSMUSG00000039219	Arid4b	88	63.902	ENSACLG00000023521	tomm20a	98	63.902	Astatotilapia_calliptera
ENSMUSG00000039219	Arid4b	72	88.000	ENSAMXG00000003657	tomm20a	86	67.229	Astyanax_mexicanus
ENSMUSG00000039219	Arid4b	100	86.844	ENSBTAG00000000222	ARID4B	100	86.844	Bos_taurus
ENSMUSG00000039219	Arid4b	100	88.128	ENSCJAG00000018055	ARID4B	100	87.900	Callithrix_jacchus
ENSMUSG00000039219	Arid4b	100	88.745	ENSCAFG00000011439	ARID4B	100	88.289	Canis_familiaris
ENSMUSG00000039219	Arid4b	99	88.370	ENSCAFG00020027130	ARID4B	99	87.911	Canis_lupus_dingo
ENSMUSG00000039219	Arid4b	99	84.404	ENSCHIG00000020742	ARID4B	100	84.327	Capra_hircus
ENSMUSG00000039219	Arid4b	100	88.821	ENSTSYG00000010028	ARID4B	100	88.745	Carlito_syrichta
ENSMUSG00000039219	Arid4b	99	86.824	ENSCPOG00000034766	ARID4B	100	87.053	Cavia_porcellus
ENSMUSG00000039219	Arid4b	100	89.125	ENSCCAG00000021520	ARID4B	100	88.973	Cebus_capucinus
ENSMUSG00000039219	Arid4b	100	89.506	ENSCATG00000042166	ARID4B	100	89.354	Cercocebus_atys
ENSMUSG00000039219	Arid4b	100	88.517	ENSCLAG00000003255	ARID4B	100	88.213	Chinchilla_lanigera
ENSMUSG00000039219	Arid4b	100	89.734	ENSCSAG00000010069	ARID4B	100	89.582	Chlorocebus_sabaeus
ENSMUSG00000039219	Arid4b	76	100.000	ENSCHOG00000001152	ARID4B	76	100.000	Choloepus_hoffmanni
ENSMUSG00000039219	Arid4b	100	74.698	ENSCPBG00000004501	ARID4B	100	75.378	Chrysemys_picta_bellii
ENSMUSG00000039219	Arid4b	100	85.932	ENSCANG00000027498	ARID4B	100	80.708	Colobus_angolensis_palliatus
ENSMUSG00000039219	Arid4b	100	93.688	ENSCGRG00001014397	Arid4b	100	93.916	Cricetulus_griseus_chok1gshd
ENSMUSG00000039219	Arid4b	99	93.679	ENSCGRG00000004910	Arid4b	100	93.907	Cricetulus_griseus_crigri
ENSMUSG00000039219	Arid4b	56	86.945	ENSDNOG00000005711	ARID4B	100	86.945	Dasypus_novemcinctus
ENSMUSG00000039219	Arid4b	99	88.737	ENSDORG00000006422	Arid4b	100	88.280	Dipodomys_ordii
ENSMUSG00000039219	Arid4b	89	87.183	ENSETEG00000005596	ARID4B	92	86.613	Echinops_telfairi
ENSMUSG00000039219	Arid4b	99	86.748	ENSEASG00005000677	ARID4B	99	87.510	Equus_asinus_asinus
ENSMUSG00000039219	Arid4b	99	88.043	ENSECAG00000017836	ARID4B	99	88.423	Equus_caballus
ENSMUSG00000039219	Arid4b	83	100.000	ENSEEUG00000005378	ARID4B	86	100.000	Erinaceus_europaeus
ENSMUSG00000039219	Arid4b	100	87.757	ENSFCAG00000030096	ARID4B	100	87.529	Felis_catus
ENSMUSG00000039219	Arid4b	100	76.360	ENSFALG00000013548	ARID4B	98	76.360	Ficedula_albicollis
ENSMUSG00000039219	Arid4b	99	88.043	ENSFDAG00000014194	ARID4B	100	87.205	Fukomys_damarensis
ENSMUSG00000039219	Arid4b	99	51.072	ENSFHEG00000003798	tomm20a	100	50.728	Fundulus_heteroclitus
ENSMUSG00000039219	Arid4b	90	52.917	ENSGMOG00000018747	tomm20a	92	51.959	Gadus_morhua
ENSMUSG00000039219	Arid4b	99	52.972	ENSGACG00000004298	tomm20a	100	51.935	Gasterosteus_aculeatus
ENSMUSG00000039219	Arid4b	100	73.640	ENSGAGG00000020544	ARID4B	98	73.589	Gopherus_agassizii
ENSMUSG00000039219	Arid4b	100	89.202	ENSGGOG00000022080	ARID4B	100	89.049	Gorilla_gorilla
ENSMUSG00000039219	Arid4b	100	88.593	ENSHGLG00000012546	ARID4B	100	88.289	Heterocephalus_glaber_female
ENSMUSG00000039219	Arid4b	100	88.593	ENSHGLG00100015436	ARID4B	100	88.289	Heterocephalus_glaber_male
ENSMUSG00000039219	Arid4b	91	73.301	ENSHCOG00000010376	tomm20a	95	73.301	Hippocampus_comes
ENSMUSG00000039219	Arid4b	100	88.830	ENSSTOG00000002810	ARID4B	100	88.906	Ictidomys_tridecemlineatus
ENSMUSG00000039219	Arid4b	100	86.236	ENSJJAG00000021368	Arid4b	100	85.475	Jaculus_jaculus
ENSMUSG00000039219	Arid4b	88	51.951	ENSKMAG00000010987	tomm20a	97	86.139	Kryptolebias_marmoratus
ENSMUSG00000039219	Arid4b	99	87.586	ENSLAFG00000014295	ARID4B	100	87.053	Loxodonta_africana
ENSMUSG00000039219	Arid4b	100	89.506	ENSMFAG00000044016	ARID4B	100	89.354	Macaca_fascicularis
ENSMUSG00000039219	Arid4b	100	89.506	ENSMMUG00000007141	ARID4B	100	89.354	Macaca_mulatta
ENSMUSG00000039219	Arid4b	100	89.049	ENSMNEG00000014840	ARID4B	100	88.821	Macaca_nemestrina
ENSMUSG00000039219	Arid4b	99	89.450	ENSMLEG00000033583	ARID4B	100	89.297	Mandrillus_leucophaeus
ENSMUSG00000039219	Arid4b	100	76.133	ENSMGAG00000011896	ARID4B	100	76.057	Meleagris_gallopavo
ENSMUSG00000039219	Arid4b	100	89.598	ENSMICG00000016358	ARID4B	100	89.446	Microcebus_murinus
ENSMUSG00000039219	Arid4b	87	75.243	ENSMMOG00000000561	tomm20a	95	74.029	Mola_mola
ENSMUSG00000039219	Arid4b	100	81.929	ENSMODG00000008417	ARID4B	100	81.473	Monodelphis_domestica
ENSMUSG00000039219	Arid4b	100	98.097	MGP_CAROLIEiJ_G0018236	Arid4b	100	98.097	Mus_caroli
ENSMUSG00000039219	Arid4b	100	97.489	MGP_PahariEiJ_G0019286	Arid4b	100	97.489	Mus_pahari
ENSMUSG00000039219	Arid4b	100	99.087	MGP_SPRETEiJ_G0019094	Arid4b	100	99.087	Mus_spretus
ENSMUSG00000039219	Arid4b	100	87.605	ENSMPUG00000002906	ARID4B	100	87.300	Mustela_putorius_furo
ENSMUSG00000039219	Arid4b	99	86.094	ENSMLUG00000016232	ARID4B	100	85.638	Myotis_lucifugus
ENSMUSG00000039219	Arid4b	100	87.358	ENSNGAG00000014629	Arid4b	100	87.055	Nannospalax_galili
ENSMUSG00000039219	Arid4b	88	73.236	ENSNBRG00000019684	tomm20a	98	73.236	Neolamprologus_brichardi
ENSMUSG00000039219	Arid4b	100	89.506	ENSNLEG00000002665	ARID4B	100	89.354	Nomascus_leucogenys
ENSMUSG00000039219	Arid4b	100	88.289	ENSODEG00000005373	ARID4B	100	87.833	Octodon_degus
ENSMUSG00000039219	Arid4b	99	89.109	ENSOCUG00000006605	ARID4B	100	89.109	Oryctolagus_cuniculus
ENSMUSG00000039219	Arid4b	100	52.347	ENSORLG00000012510	tomm20a	100	52.446	Oryzias_latipes
ENSMUSG00000039219	Arid4b	89	73.735	ENSORLG00020013988	tomm20a	99	73.735	Oryzias_latipes_hni
ENSMUSG00000039219	Arid4b	89	74.334	ENSORLG00015022835	tomm20a	99	74.334	Oryzias_latipes_hsok
ENSMUSG00000039219	Arid4b	99	79.718	ENSOGAG00000012476	ARID4B	55	79.518	Otolemur_garnettii
ENSMUSG00000039219	Arid4b	99	85.976	ENSOARG00000003481	ARID4B	97	85.976	Ovis_aries
ENSMUSG00000039219	Arid4b	100	89.125	ENSPPAG00000031651	ARID4B	100	88.897	Pan_paniscus
ENSMUSG00000039219	Arid4b	100	87.757	ENSPPRG00000013739	ARID4B	100	87.224	Panthera_pardus
ENSMUSG00000039219	Arid4b	100	85.856	ENSPTIG00000012520	ARID4B	100	85.323	Panthera_tigris_altaica
ENSMUSG00000039219	Arid4b	100	89.278	ENSPTRG00000002129	ARID4B	100	89.049	Pan_troglodytes
ENSMUSG00000039219	Arid4b	85	87.960	ENSPTRG00000048786	-	95	87.691	Pan_troglodytes
ENSMUSG00000039219	Arid4b	99	89.033	ENSPANG00000013611	ARID4B	100	88.880	Papio_anubis
ENSMUSG00000039219	Arid4b	93	74.272	ENSPSIG00000011632	ARID4B	99	74.818	Pelodiscus_sinensis
ENSMUSG00000039219	Arid4b	100	80.790	ENSPCIG00000029756	ARID4B	100	80.866	Phascolarctos_cinereus
ENSMUSG00000039219	Arid4b	99	50.889	ENSPREG00000007996	tomm20a	100	45.357	Poecilia_reticulata
ENSMUSG00000039219	Arid4b	100	89.049	ENSPPYG00000000098	ARID4B	100	88.821	Pongo_abelii
ENSMUSG00000039219	Arid4b	100	89.362	ENSPCOG00000024328	ARID4B	100	89.286	Propithecus_coquereli
ENSMUSG00000039219	Arid4b	100	83.574	ENSPVAG00000015159	ARID4B	100	82.890	Pteropus_vampyrus
ENSMUSG00000039219	Arid4b	87	95.213	ENSRNOG00000016391	LOC100912163	97	95.213	Rattus_norvegicus
ENSMUSG00000039219	Arid4b	99	81.797	ENSRBIG00000042029	ARID4B	100	81.645	Rhinopithecus_bieti
ENSMUSG00000039219	Arid4b	100	89.506	ENSRROG00000045203	ARID4B	100	89.354	Rhinopithecus_roxellana
ENSMUSG00000039219	Arid4b	83	88.015	ENSSBOG00000020196	ARID4B	100	87.832	Saimiri_boliviensis_boliviensis
ENSMUSG00000039219	Arid4b	100	81.439	ENSSHAG00000015214	ARID4B	100	81.818	Sarcophilus_harrisii
ENSMUSG00000039219	Arid4b	54	58.611	ENSSFOG00015000132	arid4b	55	57.713	Scleropages_formosus
ENSMUSG00000039219	Arid4b	76	41.578	ENSSFOG00015008923	tomm20a	56	84.375	Scleropages_formosus
ENSMUSG00000039219	Arid4b	100	75.170	ENSSPUG00000015466	ARID4B	98	74.717	Sphenodon_punctatus
ENSMUSG00000039219	Arid4b	100	87.833	ENSSSCG00000010156	ARID4B	100	87.452	Sus_scrofa
ENSMUSG00000039219	Arid4b	100	76.841	ENSTGUG00000010246	ARID4B	100	76.158	Taeniopygia_guttata
ENSMUSG00000039219	Arid4b	56	45.833	ENSTRUG00000002893	tomm20a	85	44.828	Takifugu_rubripes
ENSMUSG00000039219	Arid4b	80	83.512	ENSTBEG00000003961	ARID4B	80	82.013	Tupaia_belangeri
ENSMUSG00000039219	Arid4b	100	87.681	ENSTTRG00000002228	ARID4B	100	86.920	Tursiops_truncatus
ENSMUSG00000039219	Arid4b	99	87.741	ENSUMAG00000006905	ARID4B	100	86.970	Ursus_maritimus
ENSMUSG00000039219	Arid4b	69	89.000	ENSVPAG00000006841	ARID4B	69	89.000	Vicugna_pacos
ENSMUSG00000039219	Arid4b	99	87.288	ENSVVUG00000008154	ARID4B	99	87.288	Vulpes_vulpes
ENSMUSG00000039219	Arid4b	100	61.504	ENSXETG00000024651	arid4b	100	61.191	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0005515	protein binding	22674187.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006349	regulation of gene expression by genetic imprinting	17043311.	IGI	Process
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0007283	spermatogenesis	23487765.	IGI	Process
GO:0034773	histone H4-K20 trimethylation	17043311.	IGI	Process
GO:0036124	histone H3-K9 trimethylation	17043311.	IGI	Process
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	23487765.	IGI	Process
GO:0097368	establishment of Sertoli cell barrier	23487765.	IGI	Process