EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039396 (Gene tree)
Gene ID: 234258
Gene Symbol: Neil3
Alias: -
Full Name: nei like 3 (E. coli)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 52199 bases
Position: chr8:53586867-53639065
Accession: 2384588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000041909	zf-RanBP	PF00641.18	6.4e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000047768	-	2253	-	ENSMUSP00000041909	606 (aa)	-	Q8K203
ENSMUST00000211404	-	327	-	-	- (aa)	-	-
ENSMUST00000153267	-	782	-	-	- (aa)	-	-
ENSMUST00000149053	-	814	-	-	- (aa)	-	-
ENSMUST00000130656	-	3085	-	-	- (aa)	-	-
ENSMUST00000135443	-	373	-	ENSMUSP00000121938	49 (aa)	-	D3Z1T7
ENSMUST00000126157	-	783	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000039396's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039396's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039396	Neil3	100	73.927	ENSG00000109674	NEIL3	100	73.927	Homo_sapiens
ENSMUSG00000039396	Neil3	100	50.492	ENSACIG00000002265	neil3	100	50.492	Amphilophus_citrinellus
ENSMUSG00000039396	Neil3	100	50.081	ENSATEG00000004193	neil3	100	50.081	Anabas_testudineus
ENSMUSG00000039396	Neil3	100	69.028	ENSANAG00000026464	NEIL3	100	69.028	Aotus_nancymaae
ENSMUSG00000039396	Neil3	100	50.649	ENSACLG00000011270	neil3	100	50.649	Astatotilapia_calliptera
ENSMUSG00000039396	Neil3	100	70.675	ENSBTAG00000005825	NEIL3	100	70.675	Bos_taurus
ENSMUSG00000039396	Neil3	100	72.937	ENSCJAG00000005464	NEIL3	100	72.937	Callithrix_jacchus
ENSMUSG00000039396	Neil3	100	71.334	ENSCHIG00000009157	NEIL3	100	71.334	Capra_hircus
ENSMUSG00000039396	Neil3	100	72.772	ENSTSYG00000014680	NEIL3	100	72.772	Carlito_syrichta
ENSMUSG00000039396	Neil3	85	73.294	ENSCAPG00000006333	NEIL3	98	73.294	Cavia_aperea
ENSMUSG00000039396	Neil3	100	73.311	ENSCPOG00000003297	NEIL3	100	73.311	Cavia_porcellus
ENSMUSG00000039396	Neil3	100	73.927	ENSCCAG00000018838	NEIL3	100	73.927	Cebus_capucinus
ENSMUSG00000039396	Neil3	100	72.323	ENSCLAG00000015661	NEIL3	100	72.323	Chinchilla_lanigera
ENSMUSG00000039396	Neil3	100	72.772	ENSCSAG00000003064	NEIL3	100	72.772	Chlorocebus_sabaeus
ENSMUSG00000039396	Neil3	77	77.966	ENSCHOG00000008101	NEIL3	77	77.966	Choloepus_hoffmanni
ENSMUSG00000039396	Neil3	100	72.772	ENSCANG00000043622	NEIL3	100	72.772	Colobus_angolensis_palliatus
ENSMUSG00000039396	Neil3	100	50.734	ENSCSEG00000003828	neil3	99	50.734	Cynoglossus_semilaevis
ENSMUSG00000039396	Neil3	100	50.651	ENSDARG00000020079	neil3	100	50.651	Danio_rerio
ENSMUSG00000039396	Neil3	86	73.129	ENSDNOG00000012236	NEIL3	100	73.129	Dasypus_novemcinctus
ENSMUSG00000039396	Neil3	100	72.442	ENSEASG00005022272	NEIL3	100	72.442	Equus_asinus_asinus
ENSMUSG00000039396	Neil3	100	72.442	ENSECAG00000009121	NEIL3	100	72.442	Equus_caballus
ENSMUSG00000039396	Neil3	75	62.775	ENSEEUG00000010848	NEIL3	100	62.775	Erinaceus_europaeus
ENSMUSG00000039396	Neil3	100	71.005	ENSFCAG00000004956	NEIL3	100	71.005	Felis_catus
ENSMUSG00000039396	Neil3	100	50.325	ENSHBUG00000023848	neil3	100	50.325	Haplochromis_burtoni
ENSMUSG00000039396	Neil3	86	72.745	ENSHGLG00000006643	NEIL3	100	72.745	Heterocephalus_glaber_female
ENSMUSG00000039396	Neil3	86	72.745	ENSHGLG00100006959	NEIL3	100	72.745	Heterocephalus_glaber_male
ENSMUSG00000039396	Neil3	100	73.641	ENSSTOG00000016245	NEIL3	100	73.641	Ictidomys_tridecemlineatus
ENSMUSG00000039396	Neil3	63	54.639	ENSLACG00000000308	NEIL3	99	54.639	Latimeria_chalumnae
ENSMUSG00000039396	Neil3	100	73.597	ENSMFAG00000002547	NEIL3	100	73.597	Macaca_fascicularis
ENSMUSG00000039396	Neil3	100	73.762	ENSMMUG00000007394	NEIL3	100	73.762	Macaca_mulatta
ENSMUSG00000039396	Neil3	100	73.432	ENSMNEG00000036177	NEIL3	100	73.432	Macaca_nemestrina
ENSMUSG00000039396	Neil3	100	50.324	ENSMAMG00000017052	neil3	100	50.162	Mastacembelus_armatus
ENSMUSG00000039396	Neil3	100	50.487	ENSMZEG00005001680	neil3	100	50.487	Maylandia_zebra
ENSMUSG00000039396	Neil3	90	61.101	ENSMODG00000003813	NEIL3	99	61.101	Monodelphis_domestica
ENSMUSG00000039396	Neil3	100	95.215	MGP_CAROLIEiJ_G0031052	Neil3	100	95.215	Mus_caroli
ENSMUSG00000039396	Neil3	100	91.584	MGP_PahariEiJ_G0021518	Neil3	100	91.584	Mus_pahari
ENSMUSG00000039396	Neil3	100	96.700	MGP_SPRETEiJ_G0032167	Neil3	100	96.700	Mus_spretus
ENSMUSG00000039396	Neil3	100	49.429	ENSNBRG00000013229	neil3	100	49.429	Neolamprologus_brichardi
ENSMUSG00000039396	Neil3	100	74.092	ENSNLEG00000016818	NEIL3	100	74.092	Nomascus_leucogenys
ENSMUSG00000039396	Neil3	100	72.652	ENSODEG00000004102	NEIL3	100	72.652	Octodon_degus
ENSMUSG00000039396	Neil3	100	50.980	ENSONIG00000001176	neil3	100	50.980	Oreochromis_niloticus
ENSMUSG00000039396	Neil3	99	71.667	ENSOCUG00000001040	NEIL3	99	71.667	Oryctolagus_cuniculus
ENSMUSG00000039396	Neil3	100	47.650	ENSOMEG00000014798	neil3	100	47.650	Oryzias_melastigma
ENSMUSG00000039396	Neil3	100	71.499	ENSOGAG00000012624	NEIL3	100	71.499	Otolemur_garnettii
ENSMUSG00000039396	Neil3	96	70.052	ENSOARG00000006852	NEIL3	100	71.351	Ovis_aries
ENSMUSG00000039396	Neil3	100	73.267	ENSPPAG00000035318	NEIL3	100	73.267	Pan_paniscus
ENSMUSG00000039396	Neil3	100	71.334	ENSPPRG00000003958	NEIL3	100	71.334	Panthera_pardus
ENSMUSG00000039396	Neil3	100	71.664	ENSPTIG00000012966	NEIL3	100	71.664	Panthera_tigris_altaica
ENSMUSG00000039396	Neil3	100	74.422	ENSPTRG00000016617	NEIL3	100	74.422	Pan_troglodytes
ENSMUSG00000039396	Neil3	100	73.597	ENSPANG00000014727	NEIL3	100	73.597	Papio_anubis
ENSMUSG00000039396	Neil3	100	50.656	ENSPFOG00000018858	neil3	100	50.656	Poecilia_formosa
ENSMUSG00000039396	Neil3	100	50.492	ENSPLAG00000010685	neil3	100	50.492	Poecilia_latipinna
ENSMUSG00000039396	Neil3	100	50.820	ENSPMEG00000013971	neil3	100	50.820	Poecilia_mexicana
ENSMUSG00000039396	Neil3	100	49.340	ENSPREG00000009841	neil3	100	49.340	Poecilia_reticulata
ENSMUSG00000039396	Neil3	68	72.881	ENSPCAG00000006386	NEIL3	81	72.881	Procavia_capensis
ENSMUSG00000039396	Neil3	78	74.803	ENSPCOG00000010888	NEIL3	99	74.803	Propithecus_coquereli
ENSMUSG00000039396	Neil3	99	72.351	ENSPVAG00000002255	NEIL3	99	72.351	Pteropus_vampyrus
ENSMUSG00000039396	Neil3	100	50.656	ENSPNYG00000021276	neil3	100	50.656	Pundamilia_nyererei
ENSMUSG00000039396	Neil3	98	47.483	ENSPNAG00000019983	neil3	100	47.819	Pygocentrus_nattereri
ENSMUSG00000039396	Neil3	100	85.809	ENSRNOG00000011688	Neil3	100	85.809	Rattus_norvegicus
ENSMUSG00000039396	Neil3	100	73.432	ENSRBIG00000023002	NEIL3	100	73.432	Rhinopithecus_bieti
ENSMUSG00000039396	Neil3	100	73.267	ENSRROG00000000069	NEIL3	100	73.267	Rhinopithecus_roxellana
ENSMUSG00000039396	Neil3	100	73.597	ENSSBOG00000032601	NEIL3	100	73.597	Saimiri_boliviensis_boliviensis
ENSMUSG00000039396	Neil3	100	65.196	ENSSHAG00000007680	NEIL3	100	65.196	Sarcophilus_harrisii
ENSMUSG00000039396	Neil3	100	51.144	ENSSMAG00000009621	neil3	100	51.144	Scophthalmus_maximus
ENSMUSG00000039396	Neil3	100	70.840	ENSSSCG00000015771	NEIL3	100	70.840	Sus_scrofa
ENSMUSG00000039396	Neil3	100	71.334	ENSTTRG00000013224	NEIL3	100	71.334	Tursiops_truncatus
ENSMUSG00000039396	Neil3	100	64.638	ENSVPAG00000005020	NEIL3	100	64.638	Vicugna_pacos
ENSMUSG00000039396	Neil3	88	48.593	ENSXCOG00000014831	neil3	96	48.593	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000405	bubble DNA binding	20185759.	IDA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003684	damaged DNA binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	20185759.	IDA	Function
GO:0003697	single-stranded DNA binding	20185759.	IDA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	21873635.	IBA	Function
GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	20185759.	IDA	Function
GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	16428305.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006284	base-excision repair	21873635.	IBA	Process
GO:0006284	base-excision repair	20185759.	IDA	Process
GO:0006284	base-excision repair	-	ISO	Process
GO:0006289	nucleotide-excision repair	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0008152	metabolic process	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016798	hydrolase activity, acting on glycosyl bonds	-	IEA	Function
GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	-	IEA	Function
GO:0016829	lyase activity	-	IEA	Function
GO:0019104	DNA N-glycosylase activity	21873635.	IBA	Function
GO:0019104	DNA N-glycosylase activity	20185759.	IDA	Function
GO:0019104	DNA N-glycosylase activity	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function