EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039449 (Gene tree)
Gene ID: 67229
Gene Symbol: Prpf18
Alias: 2810441A10Rik
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 30056 bases
Position: chr2:4622058-4652113
Accession: 1914479
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000141457	PRP4	PF08799.11	2.7e-14	1	1
ENSMUSP00000041428	PRP4	PF08799.11	2.3e-13	1	1
ENSMUSP00000116495	PRP4	PF08799.11	2.3e-13	1	1
ENSMUSP00000041428	Prp18	PF02840.15	1.2e-62	1	1
ENSMUSP00000116495	Prp18	PF02840.15	1.2e-62	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000192470	-	553	-	ENSMUSP00000141457	73 (aa)	-	A0A0A6YW97
ENSMUST00000153881	-	3295	-	-	- (aa)	-	-
ENSMUST00000152362	-	1579	-	ENSMUSP00000116495	342 (aa)	-	Q8BM39
ENSMUST00000035721	-	3522	XM_006497530	ENSMUSP00000041428	342 (aa)	-	Q8BM39
ENSMUST00000140818	-	551	-	-	- (aa)	-	-
ENSMUST00000144650	-	496	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000039449's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039449's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039449	Prpf18	100	100.000	ENSG00000165630	PRPF18	100	99.123	Homo_sapiens
ENSMUSG00000039449	Prpf18	100	95.890	ENSAPOG00000024177	prpf18	100	85.380	Acanthochromis_polyacanthus
ENSMUSG00000039449	Prpf18	100	98.630	ENSAMEG00000013591	-	100	98.538	Ailuropoda_melanoleuca
ENSMUSG00000039449	Prpf18	100	91.781	ENSACIG00000001186	prpf18	100	83.918	Amphilophus_citrinellus
ENSMUSG00000039449	Prpf18	100	95.890	ENSAOCG00000006572	prpf18	94	82.749	Amphiprion_ocellaris
ENSMUSG00000039449	Prpf18	100	95.890	ENSAPEG00000004564	prpf18	100	85.673	Amphiprion_percula
ENSMUSG00000039449	Prpf18	100	94.521	ENSATEG00000000303	prpf18	100	84.211	Anabas_testudineus
ENSMUSG00000039449	Prpf18	100	95.890	ENSAPLG00000003387	-	99	90.588	Anas_platyrhynchos
ENSMUSG00000039449	Prpf18	100	97.260	ENSACAG00000000818	-	100	91.570	Anolis_carolinensis
ENSMUSG00000039449	Prpf18	100	100.000	ENSANAG00000037445	-	100	98.538	Aotus_nancymaae
ENSMUSG00000039449	Prpf18	100	93.151	ENSACLG00000026296	prpf18	100	84.503	Astatotilapia_calliptera
ENSMUSG00000039449	Prpf18	100	95.890	ENSAMXG00000012848	prpf18	100	84.571	Astyanax_mexicanus
ENSMUSG00000039449	Prpf18	100	98.630	ENSBTAG00000017244	PRPF18	100	98.246	Bos_taurus
ENSMUSG00000039449	Prpf18	98	39.368	WBGene00009320	F32B6.3	97	39.368	Caenorhabditis_elegans
ENSMUSG00000039449	Prpf18	100	100.000	ENSCJAG00000009432	-	100	98.538	Callithrix_jacchus
ENSMUSG00000039449	Prpf18	100	98.630	ENSCAFG00000004735	-	100	98.538	Canis_familiaris
ENSMUSG00000039449	Prpf18	100	98.630	ENSCAFG00020007712	-	100	98.538	Canis_lupus_dingo
ENSMUSG00000039449	Prpf18	100	98.630	ENSCHIG00000000499	-	100	98.246	Capra_hircus
ENSMUSG00000039449	Prpf18	100	100.000	ENSTSYG00000003517	-	100	98.246	Carlito_syrichta
ENSMUSG00000039449	Prpf18	100	100.000	ENSCPOG00000021069	-	100	99.123	Cavia_porcellus
ENSMUSG00000039449	Prpf18	100	100.000	ENSCCAG00000036822	-	100	98.538	Cebus_capucinus
ENSMUSG00000039449	Prpf18	100	88.012	ENSCATG00000016633	-	100	88.012	Cercocebus_atys
ENSMUSG00000039449	Prpf18	100	100.000	ENSCLAG00000011770	-	100	98.246	Chinchilla_lanigera
ENSMUSG00000039449	Prpf18	100	100.000	ENSCSAG00000013109	-	100	96.581	Chlorocebus_sabaeus
ENSMUSG00000039449	Prpf18	100	98.630	ENSCPBG00000003100	-	100	89.045	Chrysemys_picta_bellii
ENSMUSG00000039449	Prpf18	100	64.384	ENSCING00000020481	-	97	55.000	Ciona_intestinalis
ENSMUSG00000039449	Prpf18	100	64.474	ENSCSAVG00000010546	-	99	54.467	Ciona_savignyi
ENSMUSG00000039449	Prpf18	100	100.000	ENSCANG00000034900	-	100	98.830	Colobus_angolensis_palliatus
ENSMUSG00000039449	Prpf18	100	100.000	ENSCGRG00001023665	Prpf18	100	99.123	Cricetulus_griseus_chok1gshd
ENSMUSG00000039449	Prpf18	100	100.000	ENSCGRG00000014690	Prpf18	100	99.123	Cricetulus_griseus_crigri
ENSMUSG00000039449	Prpf18	100	94.521	ENSCSEG00000005536	prpf18	99	82.749	Cynoglossus_semilaevis
ENSMUSG00000039449	Prpf18	100	94.521	ENSCVAG00000012401	prpf18	100	84.211	Cyprinodon_variegatus
ENSMUSG00000039449	Prpf18	97	94.366	ENSDARG00000058306	prpf18	100	85.380	Danio_rerio
ENSMUSG00000039449	Prpf18	100	100.000	ENSDNOG00000035607	-	100	97.953	Dasypus_novemcinctus
ENSMUSG00000039449	Prpf18	100	100.000	ENSDORG00000000858	Prpf18	100	98.246	Dipodomys_ordii
ENSMUSG00000039449	Prpf18	99	51.032	FBgn0027784	Prp18	98	51.032	Drosophila_melanogaster
ENSMUSG00000039449	Prpf18	100	97.260	ENSETEG00000015060	-	100	87.427	Echinops_telfairi
ENSMUSG00000039449	Prpf18	100	78.082	ENSEBUG00000016502	prpf18	99	65.706	Eptatretus_burgeri
ENSMUSG00000039449	Prpf18	100	98.830	ENSEASG00005019373	-	100	98.830	Equus_asinus_asinus
ENSMUSG00000039449	Prpf18	100	98.830	ENSECAG00000006997	PRPF18	100	98.830	Equus_caballus
ENSMUSG00000039449	Prpf18	92	62.025	ENSEEUG00000001171	-	100	62.025	Erinaceus_europaeus
ENSMUSG00000039449	Prpf18	100	86.486	ENSELUG00000022190	prpf18	100	82.216	Esox_lucius
ENSMUSG00000039449	Prpf18	100	98.630	ENSFCAG00000004436	-	100	98.246	Felis_catus
ENSMUSG00000039449	Prpf18	100	97.260	ENSFALG00000001912	-	97	88.308	Ficedula_albicollis
ENSMUSG00000039449	Prpf18	99	64.348	ENSFDAG00000010713	-	97	64.348	Fukomys_damarensis
ENSMUSG00000039449	Prpf18	100	100.000	ENSFDAG00000014026	-	100	98.438	Fukomys_damarensis
ENSMUSG00000039449	Prpf18	100	94.521	ENSFHEG00000020125	prpf18	98	89.513	Fundulus_heteroclitus
ENSMUSG00000039449	Prpf18	100	89.041	ENSGMOG00000012210	prpf18	99	80.645	Gadus_morhua
ENSMUSG00000039449	Prpf18	100	95.890	ENSGALG00000043593	-	100	91.520	Gallus_gallus
ENSMUSG00000039449	Prpf18	100	94.521	ENSGAFG00000006034	prpf18	100	83.041	Gambusia_affinis
ENSMUSG00000039449	Prpf18	100	89.041	ENSGACG00000012232	prpf18	100	81.579	Gasterosteus_aculeatus
ENSMUSG00000039449	Prpf18	100	98.630	ENSGAGG00000016878	-	100	92.105	Gopherus_agassizii
ENSMUSG00000039449	Prpf18	100	100.000	ENSGGOG00000025188	-	96	99.051	Gorilla_gorilla
ENSMUSG00000039449	Prpf18	100	93.151	ENSHBUG00000010264	prpf18	100	84.503	Haplochromis_burtoni
ENSMUSG00000039449	Prpf18	100	100.000	ENSHGLG00000018534	PRPF18	100	98.538	Heterocephalus_glaber_female
ENSMUSG00000039449	Prpf18	100	100.000	ENSHGLG00100012161	-	98	98.750	Heterocephalus_glaber_male
ENSMUSG00000039449	Prpf18	100	95.890	ENSHCOG00000015987	prpf18	100	84.211	Hippocampus_comes
ENSMUSG00000039449	Prpf18	100	94.521	ENSIPUG00000007432	prpf18	100	82.436	Ictalurus_punctatus
ENSMUSG00000039449	Prpf18	100	100.000	ENSSTOG00000008735	-	100	97.368	Ictidomys_tridecemlineatus
ENSMUSG00000039449	Prpf18	100	100.000	ENSJJAG00000024041	-	100	99.123	Jaculus_jaculus
ENSMUSG00000039449	Prpf18	100	71.758	ENSJJAG00000015191	-	100	71.758	Jaculus_jaculus
ENSMUSG00000039449	Prpf18	100	91.781	ENSKMAG00000012124	prpf18	100	83.041	Kryptolebias_marmoratus
ENSMUSG00000039449	Prpf18	100	90.411	ENSLBEG00000028466	prpf18	99	83.136	Labrus_bergylta
ENSMUSG00000039449	Prpf18	100	93.151	ENSLACG00000009885	prpf18	100	86.257	Latimeria_chalumnae
ENSMUSG00000039449	Prpf18	100	97.260	ENSLOCG00000016736	prpf18	100	91.520	Lepisosteus_oculatus
ENSMUSG00000039449	Prpf18	100	100.000	ENSLAFG00000007753	-	100	99.123	Loxodonta_africana
ENSMUSG00000039449	Prpf18	100	100.000	ENSMFAG00000000540	-	100	99.123	Macaca_fascicularis
ENSMUSG00000039449	Prpf18	100	100.000	ENSMMUG00000015071	PRPF18	100	99.123	Macaca_mulatta
ENSMUSG00000039449	Prpf18	100	100.000	ENSMNEG00000024679	-	100	99.123	Macaca_nemestrina
ENSMUSG00000039449	Prpf18	100	100.000	ENSMLEG00000031715	-	100	83.918	Mandrillus_leucophaeus
ENSMUSG00000039449	Prpf18	100	94.521	ENSMAMG00000006610	prpf18	100	83.626	Mastacembelus_armatus
ENSMUSG00000039449	Prpf18	100	93.151	ENSMZEG00005019392	prpf18	100	84.503	Maylandia_zebra
ENSMUSG00000039449	Prpf18	100	95.890	ENSMGAG00000005023	-	100	91.520	Meleagris_gallopavo
ENSMUSG00000039449	Prpf18	100	100.000	ENSMICG00000006572	-	100	98.830	Microcebus_murinus
ENSMUSG00000039449	Prpf18	100	100.000	ENSMOCG00000021468	Prpf18	100	99.123	Microtus_ochrogaster
ENSMUSG00000039449	Prpf18	100	93.151	ENSMMOG00000013012	prpf18	100	83.333	Mola_mola
ENSMUSG00000039449	Prpf18	100	98.630	ENSMODG00000016902	-	92	90.237	Monodelphis_domestica
ENSMUSG00000039449	Prpf18	100	85.088	ENSMODG00000024043	-	100	85.088	Monodelphis_domestica
ENSMUSG00000039449	Prpf18	100	95.890	ENSMALG00000005486	prpf18	100	78.261	Monopterus_albus
ENSMUSG00000039449	Prpf18	100	100.000	MGP_CAROLIEiJ_G0023143	Prpf18	100	100.000	Mus_caroli
ENSMUSG00000039449	Prpf18	100	100.000	MGP_PahariEiJ_G0019203	Prpf18	100	100.000	Mus_pahari
ENSMUSG00000039449	Prpf18	100	100.000	MGP_SPRETEiJ_G0024061	Prpf18	100	100.000	Mus_spretus
ENSMUSG00000039449	Prpf18	100	98.630	ENSMPUG00000000938	-	100	98.246	Mustela_putorius_furo
ENSMUSG00000039449	Prpf18	100	99.415	ENSMLUG00000009200	-	100	99.415	Myotis_lucifugus
ENSMUSG00000039449	Prpf18	67	92.174	ENSNGAG00000023550	-	82	92.174	Nannospalax_galili
ENSMUSG00000039449	Prpf18	100	98.630	ENSNGAG00000012500	-	100	98.538	Nannospalax_galili
ENSMUSG00000039449	Prpf18	100	93.151	ENSNBRG00000001778	prpf18	100	84.503	Neolamprologus_brichardi
ENSMUSG00000039449	Prpf18	100	100.000	ENSNLEG00000012186	-	100	99.123	Nomascus_leucogenys
ENSMUSG00000039449	Prpf18	89	89.231	ENSMEUG00000005032	-	100	65.497	Notamacropus_eugenii
ENSMUSG00000039449	Prpf18	77	80.377	ENSOPRG00000002153	-	100	80.377	Ochotona_princeps
ENSMUSG00000039449	Prpf18	100	98.630	ENSODEG00000003770	-	100	98.246	Octodon_degus
ENSMUSG00000039449	Prpf18	100	93.151	ENSONIG00000014854	prpf18	96	83.881	Oreochromis_niloticus
ENSMUSG00000039449	Prpf18	100	98.630	ENSOANG00000015404	-	100	93.860	Ornithorhynchus_anatinus
ENSMUSG00000039449	Prpf18	100	100.000	ENSOCUG00000027756	-	100	94.737	Oryctolagus_cuniculus
ENSMUSG00000039449	Prpf18	100	94.521	ENSORLG00000010293	prpf18	100	82.906	Oryzias_latipes
ENSMUSG00000039449	Prpf18	100	94.521	ENSORLG00020001530	prpf18	100	85.088	Oryzias_latipes_hni
ENSMUSG00000039449	Prpf18	100	94.521	ENSORLG00015013705	prpf18	100	84.795	Oryzias_latipes_hsok
ENSMUSG00000039449	Prpf18	100	94.521	ENSOMEG00000009167	prpf18	100	85.088	Oryzias_melastigma
ENSMUSG00000039449	Prpf18	100	100.000	ENSOGAG00000007294	-	100	97.953	Otolemur_garnettii
ENSMUSG00000039449	Prpf18	100	98.630	ENSOARG00000006243	-	100	95.726	Ovis_aries
ENSMUSG00000039449	Prpf18	100	100.000	ENSPPAG00000041959	-	100	99.123	Pan_paniscus
ENSMUSG00000039449	Prpf18	100	98.630	ENSPPRG00000000107	-	100	98.246	Panthera_pardus
ENSMUSG00000039449	Prpf18	100	98.630	ENSPTIG00000021094	-	100	97.953	Panthera_tigris_altaica
ENSMUSG00000039449	Prpf18	100	100.000	ENSPTRG00000002306	PRPF18	100	99.123	Pan_troglodytes
ENSMUSG00000039449	Prpf18	100	100.000	ENSPANG00000023346	-	100	98.830	Papio_anubis
ENSMUSG00000039449	Prpf18	100	94.521	ENSPKIG00000014128	prpf18	96	82.621	Paramormyrops_kingsleyae
ENSMUSG00000039449	Prpf18	100	98.630	ENSPSIG00000016064	-	100	92.690	Pelodiscus_sinensis
ENSMUSG00000039449	Prpf18	100	94.521	ENSPMGG00000016486	prpf18	100	77.778	Periophthalmus_magnuspinnatus
ENSMUSG00000039449	Prpf18	100	100.000	ENSPEMG00000013704	Prpf18	100	99.415	Peromyscus_maniculatus_bairdii
ENSMUSG00000039449	Prpf18	97	84.507	ENSPMAG00000000204	prpf18	100	74.277	Petromyzon_marinus
ENSMUSG00000039449	Prpf18	100	98.630	ENSPCIG00000012963	-	99	95.886	Phascolarctos_cinereus
ENSMUSG00000039449	Prpf18	100	94.521	ENSPFOG00000017611	prpf18	100	81.714	Poecilia_formosa
ENSMUSG00000039449	Prpf18	100	94.521	ENSPLAG00000000369	prpf18	100	83.333	Poecilia_latipinna
ENSMUSG00000039449	Prpf18	100	94.521	ENSPMEG00000005183	prpf18	100	83.333	Poecilia_mexicana
ENSMUSG00000039449	Prpf18	100	94.521	ENSPREG00000015232	prpf18	100	82.749	Poecilia_reticulata
ENSMUSG00000039449	Prpf18	100	100.000	ENSPPYG00000002101	PRPF18	100	98.830	Pongo_abelii
ENSMUSG00000039449	Prpf18	100	100.000	ENSPCAG00000010833	-	100	80.117	Procavia_capensis
ENSMUSG00000039449	Prpf18	100	100.000	ENSPCOG00000013057	-	100	92.105	Propithecus_coquereli
ENSMUSG00000039449	Prpf18	100	61.111	ENSPVAG00000002947	-	100	61.111	Pteropus_vampyrus
ENSMUSG00000039449	Prpf18	100	93.151	ENSPNYG00000003554	prpf18	100	84.503	Pundamilia_nyererei
ENSMUSG00000039449	Prpf18	100	95.890	ENSPNAG00000023151	prpf18	100	85.755	Pygocentrus_nattereri
ENSMUSG00000039449	Prpf18	100	98.630	ENSRNOG00000018396	Prpf18	100	98.538	Rattus_norvegicus
ENSMUSG00000039449	Prpf18	100	100.000	ENSRBIG00000028028	-	100	98.538	Rhinopithecus_bieti
ENSMUSG00000039449	Prpf18	100	100.000	ENSRROG00000040695	-	100	98.830	Rhinopithecus_roxellana
ENSMUSG00000039449	Prpf18	100	100.000	ENSSBOG00000034482	-	100	98.538	Saimiri_boliviensis_boliviensis
ENSMUSG00000039449	Prpf18	100	98.630	ENSSHAG00000016463	-	100	95.906	Sarcophilus_harrisii
ENSMUSG00000039449	Prpf18	100	77.485	ENSSHAG00000009669	-	100	77.485	Sarcophilus_harrisii
ENSMUSG00000039449	Prpf18	100	93.151	ENSSFOG00015022118	prpf18	100	76.657	Scleropages_formosus
ENSMUSG00000039449	Prpf18	77	44.151	ENSSFOG00015021154	-	89	48.927	Scleropages_formosus
ENSMUSG00000039449	Prpf18	100	93.151	ENSSMAG00000005308	prpf18	100	82.749	Scophthalmus_maximus
ENSMUSG00000039449	Prpf18	100	95.890	ENSSDUG00000015428	prpf18	100	85.088	Seriola_dumerili
ENSMUSG00000039449	Prpf18	100	95.890	ENSSLDG00000023989	prpf18	100	85.088	Seriola_lalandi_dorsalis
ENSMUSG00000039449	Prpf18	100	68.129	ENSSARG00000005307	-	100	68.129	Sorex_araneus
ENSMUSG00000039449	Prpf18	100	95.890	ENSSPUG00000002619	-	100	91.813	Sphenodon_punctatus
ENSMUSG00000039449	Prpf18	100	95.890	ENSSPAG00000019502	prpf18	100	84.503	Stegastes_partitus
ENSMUSG00000039449	Prpf18	100	98.630	ENSSSCG00000026354	-	100	98.538	Sus_scrofa
ENSMUSG00000039449	Prpf18	100	97.260	ENSTGUG00000002286	-	100	91.520	Taeniopygia_guttata
ENSMUSG00000039449	Prpf18	100	90.411	ENSTRUG00000011278	prpf18	100	82.164	Takifugu_rubripes
ENSMUSG00000039449	Prpf18	100	93.151	ENSTNIG00000000911	prpf18	100	81.871	Tetraodon_nigroviridis
ENSMUSG00000039449	Prpf18	100	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
ENSMUSG00000039449	Prpf18	100	100.000	ENSTTRG00000011117	PRPF18	100	98.830	Tursiops_truncatus
ENSMUSG00000039449	Prpf18	100	98.630	ENSUAMG00000001815	-	94	95.385	Ursus_americanus
ENSMUSG00000039449	Prpf18	100	97.260	ENSUMAG00000012329	-	100	93.567	Ursus_maritimus
ENSMUSG00000039449	Prpf18	100	98.630	ENSVPAG00000011486	-	100	92.982	Vicugna_pacos
ENSMUSG00000039449	Prpf18	100	98.630	ENSVVUG00000005453	-	100	98.538	Vulpes_vulpes
ENSMUSG00000039449	Prpf18	95	85.507	ENSXETG00000024057	prpf18	100	80.290	Xenopus_tropicalis
ENSMUSG00000039449	Prpf18	100	94.521	ENSXCOG00000020414	prpf18	100	82.558	Xiphophorus_couchianus
ENSMUSG00000039449	Prpf18	100	94.521	ENSXMAG00000004713	prpf18	91	83.041	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000350	generation of catalytic spliceosome for second transesterification step	21873635.	IBA	Process
GO:0000386	second spliceosomal transesterification activity	21873635.	IBA	Function
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016020	membrane	-	ISO	Component
GO:0032269	negative regulation of cellular protein metabolic process	-	ISO	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071021	U2-type post-spliceosomal complex	21873635.	IBA	Component
GO:0071048	nuclear retention of unspliced pre-mRNA at the site of transcription	21873635.	IBA	Process