EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039501 (Gene tree)
Gene ID: 98999
Gene Symbol: Znfx1
Alias: -
Full Name: zinc finger%2C NFX1-type containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 27223
Position: chr2: 167035793-167063015
Accession: 2138982
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000128676	-	2695	-	ENSMUSP00000121598	840 (aa)	-	A2A5R4
ENSMUST00000135967	-	2904	-	-	- (aa)	-	-
ENSMUST00000067584	-	4147	-	ENSMUSP00000072867	1045 (aa)	-	A2A5R6
ENSMUST00000048988	-	7218	XM_006500456	ENSMUSP00000049404	1909 (aa)	XP_006500519	Q8R151
ENSMUST00000155281	-	2751	-	ENSMUSP00000121750	869 (aa)	-	A2A5R5

Gene Model

Click here to download ENSMUSG00000039501's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039501's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039501	Znfx1	100	87.643	ENSG00000124201	ZNFX1	100	87.643	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003700	DNA-binding transcription factor activity	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0030702	chromatin silencing at centromere	21873635.	IBA	Process
GO:0031048	chromatin silencing by small RNA	21873635.	IBA	Process
GO:0031380	nuclear RNA-directed RNA polymerase complex	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function