EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000039536 (Gene tree)
Gene ID
20853
Gene Symbol
Stau1
Alias
5830401L18Rik
Full Name
staufen double-stranded RNA binding protein 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
48751 bases
Position
chr2:166947549-166996299
Accession
1338864
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000042626dsrmPF00035.261.6e-2612
ENSMUSP00000042626dsrmPF00035.261.6e-2622
ENSMUSP00000104858dsrmPF00035.261.6e-2612
ENSMUSP00000104858dsrmPF00035.261.6e-2622
ENSMUSP00000104859dsrmPF00035.261.7e-2612
ENSMUSP00000104859dsrmPF00035.261.7e-2622
ENSMUSP00000104861dsrmPF00035.263e-2312
ENSMUSP00000104861dsrmPF00035.263e-2322
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseRBDmap & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000142481-3573--- (aa)--
ENSMUST00000184390-1513-ENSMUSP00000139039436 (aa)-V9GX87
ENSMUST00000154506-826--- (aa)--
ENSMUST00000149454-774--- (aa)--
ENSMUST00000134664-862--- (aa)--
ENSMUST00000049412-2840XM_006499071ENSMUSP00000042626485 (aa)XP_006499134A2A5R8
ENSMUST00000109238-2976XM_011239406ENSMUSP00000104861495 (aa)XP_011237708A2A5S3
ENSMUST00000130790-788--- (aa)--
ENSMUST00000109235-3569-ENSMUSP00000104858489 (aa)-Q9DBE7
ENSMUST00000109236-2860-ENSMUSP00000104859487 (aa)-Q9Z108
ENSMUST00000130104-341--- (aa)--
Gene Model
Click here to download ENSMUSG00000039536's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039536's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000039536Stau18648.055ENSMUSG00000025920Stau28548.046
ENSMUSG00000039536Stau15231.395ENSMUSG00000002731Prkra5331.395
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000039536Stau110091.581ENSG00000124214STAU19991.581Homo_sapiens
ENSMUSG00000039536Stau110070.265ENSAPOG00000017260stau17170.265Acanthochromis_polyacanthus
ENSMUSG00000039536Stau110089.897ENSAMEG00000013681STAU16989.897Ailuropoda_melanoleuca
ENSMUSG00000039536Stau110071.605ENSACIG00000015918stau17172.279Amphilophus_citrinellus
ENSMUSG00000039536Stau110071.283ENSAOCG00000012224stau17171.283Amphiprion_ocellaris
ENSMUSG00000039536Stau110071.487ENSAPEG00000012308stau17171.487Amphiprion_percula
ENSMUSG00000039536Stau110071.487ENSATEG00000024600stau17371.487Anabas_testudineus
ENSMUSG00000039536Stau110082.892ENSAPLG00000010527STAU16983.673Anas_platyrhynchos
ENSMUSG00000039536Stau110082.688ENSACAG00000015909STAU17083.333Anolis_carolinensis
ENSMUSG00000039536Stau110091.111ENSANAG00000032714STAU19985.685Aotus_nancymaae
ENSMUSG00000039536Stau110070.672ENSACLG00000012270stau17170.672Astatotilapia_calliptera
ENSMUSG00000039536Stau110069.959ENSAMXG00000016812stau18469.512Astyanax_mexicanus
ENSMUSG00000039536Stau110089.366ENSBTAG00000000241STAU18589.366Bos_taurus
ENSMUSG00000039536Stau110091.411ENSCJAG00000016233STAU18591.411Callithrix_jacchus
ENSMUSG00000039536Stau110090.389ENSCAFG00000011347STAU18390.389Canis_familiaris
ENSMUSG00000039536Stau110089.113ENSCAFG00020017123STAU18289.113Canis_lupus_dingo
ENSMUSG00000039536Stau110089.366ENSCHIG00000001799-10082.892Capra_hircus
ENSMUSG00000039536Stau110089.162ENSTSYG00000036179-8589.162Carlito_syrichta
ENSMUSG00000039536Stau110088.296ENSCAPG00000017041STAU19988.296Cavia_aperea
ENSMUSG00000039536Stau110087.273ENSCPOG00000005566STAU110087.273Cavia_porcellus
ENSMUSG00000039536Stau110090.909ENSCCAG00000034339STAU18590.909Cebus_capucinus
ENSMUSG00000039536Stau110091.411ENSCATG00000028474STAU19991.111Cercocebus_atys
ENSMUSG00000039536Stau110091.313ENSCLAG00000006516-10091.313Chinchilla_lanigera
ENSMUSG00000039536Stau110073.523ENSCLAG00000002784-9874.021Chinchilla_lanigera
ENSMUSG00000039536Stau110091.207ENSCSAG00000014986STAU19991.207Chlorocebus_sabaeus
ENSMUSG00000039536Stau110090.000ENSCHOG00000001511STAU18590.000Choloepus_hoffmanni
ENSMUSG00000039536Stau110082.892ENSCPBG00000026741STAU17183.537Chrysemys_picta_bellii
ENSMUSG00000039536Stau110091.207ENSCANG00000039220STAU19981.855Colobus_angolensis_palliatus
ENSMUSG00000039536Stau110096.768ENSCGRG00001013453Stau110096.768Cricetulus_griseus_chok1gshd
ENSMUSG00000039536Stau110096.768ENSCGRG00000007216Stau110096.768Cricetulus_griseus_crigri
ENSMUSG00000039536Stau110065.567ENSCSEG00000000792stau16866.327Cynoglossus_semilaevis
ENSMUSG00000039536Stau19968.724ENSCVAG00000005906stau18669.405Cyprinodon_variegatus
ENSMUSG00000039536Stau110070.325ENSDARG00000044182stau17870.101Danio_rerio
ENSMUSG00000039536Stau110090.408ENSDNOG00000014933STAU18390.408Dasypus_novemcinctus
ENSMUSG00000039536Stau110087.321ENSDORG00000030220Stau110087.321Dipodomys_ordii
ENSMUSG00000039536Stau18589.037ENSETEG00000018235STAU17289.037Echinops_telfairi
ENSMUSG00000039536Stau110090.798ENSEASG00005023343STAU110087.081Equus_asinus_asinus
ENSMUSG00000039536Stau110090.593ENSECAG00000012894STAU18590.593Equus_caballus
ENSMUSG00000039536Stau18191.139ENSEEUG00000014344STAU16891.282Erinaceus_europaeus
ENSMUSG00000039536Stau110070.341ENSELUG00000002529stau17770.341Esox_lucius
ENSMUSG00000039536Stau110091.411ENSFCAG00000001447STAU19984.254Felis_catus
ENSMUSG00000039536Stau110082.474ENSFALG00000012940STAU17082.645Ficedula_albicollis
ENSMUSG00000039536Stau110090.303ENSFDAG00000014119-10090.303Fukomys_damarensis
ENSMUSG00000039536Stau19968.852ENSFDAG00000020837-9868.852Fukomys_damarensis
ENSMUSG00000039536Stau110070.468ENSFHEG00000013517stau18570.408Fundulus_heteroclitus
ENSMUSG00000039536Stau110059.961ENSGMOG00000016850stau17160.079Gadus_morhua
ENSMUSG00000039536Stau110084.330ENSGALG00000004736STAU17084.504Gallus_gallus
ENSMUSG00000039536Stau19970.408ENSGAFG00000010437stau17170.385Gambusia_affinis
ENSMUSG00000039536Stau19970.672ENSGACG00000001352stau17270.505Gasterosteus_aculeatus
ENSMUSG00000039536Stau110084.124ENSGAGG00000009825STAU17084.298Gopherus_agassizii
ENSMUSG00000039536Stau110090.909ENSGGOG00000025351STAU110091.781Gorilla_gorilla
ENSMUSG00000039536Stau110070.876ENSHBUG00000023668stau17170.876Haplochromis_burtoni
ENSMUSG00000039536Stau110091.411ENSHGLG00000008730STAU110091.411Heterocephalus_glaber_female
ENSMUSG00000039536Stau110091.411ENSHGLG00100000098STAU110091.411Heterocephalus_glaber_male
ENSMUSG00000039536Stau19968.916ENSHCOG00000018461stau17068.916Hippocampus_comes
ENSMUSG00000039536Stau19569.762ENSIPUG00000023725stau17069.762Ictalurus_punctatus
ENSMUSG00000039536Stau110091.616ENSSTOG00000003634STAU110091.616Ictidomys_tridecemlineatus
ENSMUSG00000039536Stau110091.002ENSJJAG00000020032Stau110091.002Jaculus_jaculus
ENSMUSG00000039536Stau19968.595ENSKMAG00000007135stau17169.121Kryptolebias_marmoratus
ENSMUSG00000039536Stau19968.687ENSLBEG00000020172stau17168.687Labrus_bergylta
ENSMUSG00000039536Stau19978.029ENSLACG00000016157STAU17076.660Latimeria_chalumnae
ENSMUSG00000039536Stau110074.743ENSLOCG00000003134stau17174.694Lepisosteus_oculatus
ENSMUSG00000039536Stau110088.957ENSLAFG00000003238STAU19688.957Loxodonta_africana
ENSMUSG00000039536Stau110091.411ENSMFAG00000040931STAU110094.118Macaca_fascicularis
ENSMUSG00000039536Stau110091.111ENSMMUG00000002302STAU110094.118Macaca_mulatta
ENSMUSG00000039536Stau110091.411ENSMNEG00000033821STAU19991.111Macaca_nemestrina
ENSMUSG00000039536Stau110091.411ENSMLEG00000031383STAU18591.411Mandrillus_leucophaeus
ENSMUSG00000039536Stau110071.487ENSMAMG00000017586stau17471.633Mastacembelus_armatus
ENSMUSG00000039536Stau110070.672ENSMZEG00005015605stau17170.672Maylandia_zebra
ENSMUSG00000039536Stau110083.096ENSMGAG00000004719STAU16983.878Meleagris_gallopavo
ENSMUSG00000039536Stau110096.162ENSMAUG00000013846Stau110096.162Mesocricetus_auratus
ENSMUSG00000039536Stau110089.899ENSMICG00000001995STAU18589.899Microcebus_murinus
ENSMUSG00000039536Stau110096.768ENSMOCG00000018743Stau110096.768Microtus_ochrogaster
ENSMUSG00000039536Stau110069.672ENSMMOG00000015455stau19869.939Mola_mola
ENSMUSG00000039536Stau110087.526ENSMODG00000016276STAU17387.526Monodelphis_domestica
ENSMUSG00000039536Stau110071.283ENSMALG00000000045stau17171.283Monopterus_albus
ENSMUSG00000039536Stau110099.192MGP_CAROLIEiJ_G0024699Stau110099.192Mus_caroli
ENSMUSG00000039536Stau110098.788MGP_PahariEiJ_G0026141Stau110098.788Mus_pahari
ENSMUSG00000039536Stau110099.596MGP_SPRETEiJ_G0025619Stau110099.596Mus_spretus
ENSMUSG00000039536Stau110090.928ENSMPUG00000017581STAU17291.116Mustela_putorius_furo
ENSMUSG00000039536Stau110089.571ENSMLUG00000008407STAU18389.571Myotis_lucifugus
ENSMUSG00000039536Stau110092.727ENSNGAG00000007108Stau110092.727Nannospalax_galili
ENSMUSG00000039536Stau110070.876ENSNBRG00000017596stau17170.876Neolamprologus_brichardi
ENSMUSG00000039536Stau110090.798ENSNLEG00000006955STAU19990.505Nomascus_leucogenys
ENSMUSG00000039536Stau19487.879ENSMEUG00000003263STAU18087.879Notamacropus_eugenii
ENSMUSG00000039536Stau110088.980ENSOPRG00000014569STAU18688.980Ochotona_princeps
ENSMUSG00000039536Stau110091.581ENSODEG00000006523STAU19991.581Octodon_degus
ENSMUSG00000039536Stau110071.079ENSONIG00000004152stau16871.224Oreochromis_niloticus
ENSMUSG00000039536Stau110082.485ENSOANG00000006394STAU17083.130Ornithorhynchus_anatinus
ENSMUSG00000039536Stau110089.571ENSOCUG00000006214STAU18589.571Oryctolagus_cuniculus
ENSMUSG00000039536Stau19969.309ENSOMEG00000002388stau17169.309Oryzias_melastigma
ENSMUSG00000039536Stau110062.753ENSOGAG00000028222-9862.753Otolemur_garnettii
ENSMUSG00000039536Stau110091.207ENSOGAG00000002127STAU18391.207Otolemur_garnettii
ENSMUSG00000039536Stau110089.366ENSOARG00000012204STAU18389.366Ovis_aries
ENSMUSG00000039536Stau110090.909ENSPPAG00000032023STAU110091.781Pan_paniscus
ENSMUSG00000039536Stau110091.411ENSPPRG00000003436STAU19991.411Panthera_pardus
ENSMUSG00000039536Stau110091.411ENSPTIG00000011768STAU19990.121Panthera_tigris_altaica
ENSMUSG00000039536Stau110090.909ENSPTRG00000023130STAU110091.781Pan_troglodytes
ENSMUSG00000039536Stau110091.207ENSPANG00000020560STAU19985.861Papio_anubis
ENSMUSG00000039536Stau110072.279ENSPKIG00000024588stau17171.660Paramormyrops_kingsleyae
ENSMUSG00000039536Stau110083.505ENSPSIG00000010731STAU17083.678Pelodiscus_sinensis
ENSMUSG00000039536Stau110070.732ENSPMGG00000018553stau19868.238Periophthalmus_magnuspinnatus
ENSMUSG00000039536Stau110097.172ENSPEMG00000022045Stau110097.172Peromyscus_maniculatus_bairdii
ENSMUSG00000039536Stau110087.526ENSPCIG00000023269STAU19982.413Phascolarctos_cinereus
ENSMUSG00000039536Stau19970.612ENSPFOG00000017253stau17170.445Poecilia_formosa
ENSMUSG00000039536Stau17163.376ENSPLAG00000014829stau17766.667Poecilia_latipinna
ENSMUSG00000039536Stau19469.481ENSPMEG00000007495stau16769.481Poecilia_mexicana
ENSMUSG00000039536Stau19970.000ENSPREG00000003477stau17169.838Poecilia_reticulata
ENSMUSG00000039536Stau110090.798ENSPPYG00000011111STAU18590.798Pongo_abelii
ENSMUSG00000039536Stau19480.921ENSPCAG00000002459STAU18480.921Procavia_capensis
ENSMUSG00000039536Stau110090.184ENSPCOG00000027746STAU19990.101Propithecus_coquereli
ENSMUSG00000039536Stau18492.409ENSPVAG00000015019STAU17192.409Pteropus_vampyrus
ENSMUSG00000039536Stau110070.876ENSPNYG00000014436stau17170.876Pundamilia_nyererei
ENSMUSG00000039536Stau110069.293ENSPNAG00000011323stau17669.433Pygocentrus_nattereri
ENSMUSG00000039536Stau110098.586ENSRNOG00000007781Stau110098.586Rattus_norvegicus
ENSMUSG00000039536Stau110091.111ENSRBIG00000037345STAU19991.111Rhinopithecus_bieti
ENSMUSG00000039536Stau110091.411ENSRROG00000039008STAU19991.020Rhinopithecus_roxellana
ENSMUSG00000039536Stau110091.207ENSSBOG00000034448STAU19987.117Saimiri_boliviensis_boliviensis
ENSMUSG00000039536Stau110087.526ENSSHAG00000009492STAU18387.526Sarcophilus_harrisii
ENSMUSG00000039536Stau110073.511ENSSFOG00015021497stau18570.392Scleropages_formosus
ENSMUSG00000039536Stau110071.079ENSSMAG00000017410stau17171.224Scophthalmus_maximus
ENSMUSG00000039536Stau110072.098ENSSDUG00000019439stau17172.098Seriola_dumerili
ENSMUSG00000039536Stau110072.098ENSSLDG00000025040stau17172.098Seriola_lalandi_dorsalis
ENSMUSG00000039536Stau110082.077ENSSPUG00000017983STAU17382.857Sphenodon_punctatus
ENSMUSG00000039536Stau110071.487ENSSPAG00000019275stau17171.487Stegastes_partitus
ENSMUSG00000039536Stau110090.184ENSSSCG00000027444STAU19990.184Sus_scrofa
ENSMUSG00000039536Stau110082.724ENSTGUG00000008784STAU16983.503Taeniopygia_guttata
ENSMUSG00000039536Stau110071.399ENSTRUG00000005837stau17072.074Takifugu_rubripes
ENSMUSG00000039536Stau19970.143ENSTNIG00000014732stau17369.838Tetraodon_nigroviridis
ENSMUSG00000039536Stau110076.735ENSTBEG00000009404STAU18576.735Tupaia_belangeri
ENSMUSG00000039536Stau19486.580ENSTTRG00000004285STAU18086.580Tursiops_truncatus
ENSMUSG00000039536Stau110088.710ENSUAMG00000025449STAU19988.710Ursus_americanus
ENSMUSG00000039536Stau19684.000ENSUMAG00000024475STAU19884.000Ursus_maritimus
ENSMUSG00000039536Stau110089.775ENSVPAG00000001313STAU18589.775Vicugna_pacos
ENSMUSG00000039536Stau110089.315ENSVVUG00000022325STAU17389.315Vulpes_vulpes
ENSMUSG00000039536Stau19977.366ENSXETG00000001783stau17077.572Xenopus_tropicalis
ENSMUSG00000039536Stau16264.964ENSXCOG00000008804stau17267.021Xiphophorus_couchianus
ENSMUSG00000039536Stau19970.408ENSXMAG00000016175stau17170.385Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding12843282.IDAFunction
GO:0003725double-stranded RNA binding-ISOFunction
GO:0005515protein binding12843282.IPIFunction
GO:0005737cytoplasm-ISOComponent
GO:0005783endoplasmic reticulum-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0005886plasma membrane-ISOComponent
GO:0008157protein phosphatase 1 binding-ISOFunction
GO:0008298intracellular mRNA localization12843282.IDAProcess
GO:0010494cytoplasmic stress granule19825938.IDAComponent
GO:0030425dendrite-ISOComponent
GO:0036464cytoplasmic ribonucleoprotein granule-ISOComponent
GO:0043005neuron projection-ISOComponent
GO:0043025neuronal cell body-ISOComponent
GO:0044297cell body-ISOComponent
GO:0045070positive regulation of viral genome replication-ISOProcess
GO:0046726positive regulation by virus of viral protein levels in host cell-ISOProcess
GO:0050804modulation of chemical synaptic transmission-ISOProcess
GO:0098963dendritic transport of messenger ribonucleoprotein complex15312650.IDAProcess
GO:0098963dendritic transport of messenger ribonucleoprotein complex15312650.IMPProcess
GO:0098978glutamatergic synapse-ISOComponent
GO:0099010modification of postsynaptic structure-ISOProcess
GO:1900273positive regulation of long-term synaptic potentiation-ISOProcess
GO:1990904ribonucleoprotein complex12843282.IDAComponent

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