EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000039630 (Gene tree)
Gene ID
51810
Gene Symbol
Hnrnpu
Alias
Hnrpu|Sp120|scaffold attachment factor A
Full Name
heterogeneous nuclear ribonucleoprotein U
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Minus strand
Length
16690 bases
Position
chr1:178321108-178337797
Accession
1858195
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000047571SAPPF02037.273.9e-1011
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000161769-2844-ENSMUSP00000124147793 (aa)-Q8VEK3
ENSMUST00000150825-923--- (aa)--
ENSMUST00000134291-673--- (aa)--
ENSMUST00000162916-710--- (aa)--
ENSMUST00000159117-2640--- (aa)--
ENSMUST00000189450-351-ENSMUSP0000013975143 (aa)-A0A087WPF1
ENSMUST00000188044-511-ENSMUSP00000139959105 (aa)-A0A087WPX7
ENSMUST00000037748-7640XM_017321672ENSMUSP00000047571800 (aa)XP_017177161Q8VEK3
ENSMUST00000146362-869--- (aa)--
Gene Model
Click here to download ENSMUSG00000039630's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039630's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000039630Hnrnpu5559.091ENSMUSG00000040725Hnrnpul16152.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000039630Hnrnpu10096.406ENSG00000153187HNRNPU100100.000Homo_sapiens
ENSMUSG00000039630Hnrnpu7556.672ENSAPOG00000017400hnrnpub8159.133Acanthochromis_polyacanthus
ENSMUSG00000039630Hnrnpu10092.822ENSAMEG00000009145HNRNPU10092.822Ailuropoda_melanoleuca
ENSMUSG00000039630Hnrnpu9950.714ENSACIG00000012138hnrnpub8680.851Amphilophus_citrinellus
ENSMUSG00000039630Hnrnpu7556.992ENSAOCG00000015843hnrnpub8159.133Amphiprion_ocellaris
ENSMUSG00000039630Hnrnpu7556.992ENSAPEG00000014679hnrnpub8159.133Amphiprion_percula
ENSMUSG00000039630Hnrnpu7061.593ENSATEG00000016178hnrnpub7259.504Anabas_testudineus
ENSMUSG00000039630Hnrnpu8083.558ENSACAG00000004511HNRNPU7289.517Anolis_carolinensis
ENSMUSG00000039630Hnrnpu10096.384ENSANAG00000033895-10096.384Aotus_nancymaae
ENSMUSG00000039630Hnrnpu7978.723ENSACLG00000008165hnrnpub8678.723Astatotilapia_calliptera
ENSMUSG00000039630Hnrnpu9996.617ENSBTAG00000007606HNRNPU9996.617Bos_taurus
ENSMUSG00000039630Hnrnpu10094.068ENSCJAG00000016914HNRNPU10094.068Callithrix_jacchus
ENSMUSG00000039630Hnrnpu10096.654ENSCAFG00020000918HNRNPU10096.654Canis_lupus_dingo
ENSMUSG00000039630Hnrnpu10096.654ENSCHIG00000004900HNRNPU10096.654Capra_hircus
ENSMUSG00000039630Hnrnpu10094.654ENSCPOG00000011887HNRNPU10094.654Cavia_porcellus
ENSMUSG00000039630Hnrnpu10096.384ENSCCAG00000037859-10096.384Cebus_capucinus
ENSMUSG00000039630Hnrnpu10096.509ENSCATG00000035273HNRNPU10096.509Cercocebus_atys
ENSMUSG00000039630Hnrnpu10094.897ENSCLAG00000007100HNRNPU10094.897Chinchilla_lanigera
ENSMUSG00000039630Hnrnpu10096.035ENSCSAG00000009219HNRNPU10096.035Chlorocebus_sabaeus
ENSMUSG00000039630Hnrnpu8193.333ENSCHOG00000001387HNRNPU7993.333Choloepus_hoffmanni
ENSMUSG00000039630Hnrnpu10077.950ENSCPBG00000009415HNRNPU9879.574Chrysemys_picta_bellii
ENSMUSG00000039630Hnrnpu10093.516ENSCANG00000022780HNRNPU10093.392Colobus_angolensis_palliatus
ENSMUSG00000039630Hnrnpu10098.875ENSCGRG00001020525Hnrnpu10098.875Cricetulus_griseus_chok1gshd
ENSMUSG00000039630Hnrnpu6978.261ENSCSEG00000010804hnrnpub8678.261Cynoglossus_semilaevis
ENSMUSG00000039630Hnrnpu8271.429ENSCVAG00000004280hnrnpub8571.429Cyprinodon_variegatus
ENSMUSG00000039630Hnrnpu8164.706ENSDARG00000015206hnrnpua8964.706Danio_rerio
ENSMUSG00000039630Hnrnpu7561.715ENSDARG00000004735hnrnpub8159.299Danio_rerio
ENSMUSG00000039630Hnrnpu8299.160ENSDNOG00000000215HNRNPU9199.160Dasypus_novemcinctus
ENSMUSG00000039630Hnrnpu10093.026ENSDORG00000015491Hnrnpu10092.653Dipodomys_ordii
ENSMUSG00000039630Hnrnpu10091.450ENSETEG00000014565HNRNPU10090.830Echinops_telfairi
ENSMUSG00000039630Hnrnpu10096.530ENSEASG00005003017HNRNPU10096.530Equus_asinus_asinus
ENSMUSG00000039630Hnrnpu10096.406ENSECAG00000007955HNRNPU10096.406Equus_caballus
ENSMUSG00000039630Hnrnpu9950.803ENSELUG00000011966hnrnpua7958.902Esox_lucius
ENSMUSG00000039630Hnrnpu7163.066ENSELUG00000010733hnrnpub6862.207Esox_lucius
ENSMUSG00000039630Hnrnpu10096.402ENSFCAG00000002156HNRNPU9996.402Felis_catus
ENSMUSG00000039630Hnrnpu8398.822ENSFDAG00000006026HNRNPU10098.822Fukomys_damarensis
ENSMUSG00000039630Hnrnpu7554.082ENSFHEG00000022639hnrnpub6260.259Fundulus_heteroclitus
ENSMUSG00000039630Hnrnpu7558.400ENSGMOG00000001755hnrnpub7760.561Gadus_morhua
ENSMUSG00000039630Hnrnpu10078.302ENSGALG00000010671HNRNPU9978.744Gallus_gallus
ENSMUSG00000039630Hnrnpu5964.043ENSGAFG00000009369hnrnpub7956.317Gambusia_affinis
ENSMUSG00000039630Hnrnpu8356.894ENSGACG00000004679hnrnpub7357.005Gasterosteus_aculeatus
ENSMUSG00000039630Hnrnpu10096.384ENSGGOG00000004061HNRNPU10096.384Gorilla_gorilla
ENSMUSG00000039630Hnrnpu10096.766ENSHGLG00000010594-10096.766Heterocephalus_glaber_female
ENSMUSG00000039630Hnrnpu8299.160ENSHGLG00100015093HNRNPU10099.160Heterocephalus_glaber_male
ENSMUSG00000039630Hnrnpu7983.333ENSHCOG00000020091hnrnpub8474.000Hippocampus_comes
ENSMUSG00000039630Hnrnpu7383.721ENSIPUG00000007749hnrnpu9268.421Ictalurus_punctatus
ENSMUSG00000039630Hnrnpu10094.404ENSJJAG00000011371Hnrnpu10094.404Jaculus_jaculus
ENSMUSG00000039630Hnrnpu7654.665ENSKMAG00000004532hnrnpub8055.038Kryptolebias_marmoratus
ENSMUSG00000039630Hnrnpu7556.399ENSLBEG00000022520hnrnpub8058.218Labrus_bergylta
ENSMUSG00000039630Hnrnpu9961.916ENSLACG00000017463HNRNPU9962.236Latimeria_chalumnae
ENSMUSG00000039630Hnrnpu8364.638ENSLOCG00000016652hnrnpua7568.019Lepisosteus_oculatus
ENSMUSG00000039630Hnrnpu10095.885ENSLAFG00000021377HNRNPU10095.885Loxodonta_africana
ENSMUSG00000039630Hnrnpu10096.509ENSMFAG00000037308HNRNPU10096.509Macaca_fascicularis
ENSMUSG00000039630Hnrnpu10096.633ENSMMUG00000021098HNRNPU10096.633Macaca_mulatta
ENSMUSG00000039630Hnrnpu10096.509ENSMNEG00000043645HNRNPU10096.509Macaca_nemestrina
ENSMUSG00000039630Hnrnpu8175.000ENSMAMG00000007196hnrnpub6663.388Mastacembelus_armatus
ENSMUSG00000039630Hnrnpu7978.723ENSMZEG00005003185hnrnpub8678.723Maylandia_zebra
ENSMUSG00000039630Hnrnpu10099.125ENSMAUG00000008842Hnrnpu10099.125Mesocricetus_auratus
ENSMUSG00000039630Hnrnpu10096.509ENSMICG00000004616HNRNPU10096.509Microcebus_murinus
ENSMUSG00000039630Hnrnpu10098.875ENSMOCG00000015623Hnrnpu10098.875Microtus_ochrogaster
ENSMUSG00000039630Hnrnpu10087.779ENSMODG00000006515HNRNPU10086.839Monodelphis_domestica
ENSMUSG00000039630Hnrnpu7983.721ENSMALG00000018243hnrnpub7063.074Monopterus_albus
ENSMUSG00000039630Hnrnpu10099.875MGP_CAROLIEiJ_G0014962Hnrnpu10099.875Mus_caroli
ENSMUSG00000039630Hnrnpu10099.126MGP_PahariEiJ_G0028193Hnrnpu10099.126Mus_pahari
ENSMUSG00000039630Hnrnpu100100.000MGP_SPRETEiJ_G0015761Hnrnpu100100.000Mus_spretus
ENSMUSG00000039630Hnrnpu10088.600ENSMLUG00000000475HNRNPU10088.490Myotis_lucifugus
ENSMUSG00000039630Hnrnpu10097.753ENSNGAG00000019075Hnrnpu10097.753Nannospalax_galili
ENSMUSG00000039630Hnrnpu7978.723ENSNBRG00000017855hnrnpub8678.723Neolamprologus_brichardi
ENSMUSG00000039630Hnrnpu9985.266ENSMEUG00000000541HNRNPU10084.420Notamacropus_eugenii
ENSMUSG00000039630Hnrnpu7095.588ENSODEG00000014458-10095.588Octodon_degus
ENSMUSG00000039630Hnrnpu8178.723ENSONIG00000001260hnrnpub8978.723Oreochromis_niloticus
ENSMUSG00000039630Hnrnpu9993.635ENSOCUG00000014469HNRNPU9493.635Oryctolagus_cuniculus
ENSMUSG00000039630Hnrnpu8083.721ENSOMEG00000014951hnrnpub8683.721Oryzias_melastigma
ENSMUSG00000039630Hnrnpu10096.283ENSOGAG00000014024HNRNPU10096.283Otolemur_garnettii
ENSMUSG00000039630Hnrnpu8398.492ENSOARG00000004985HNRNPU9198.490Ovis_aries
ENSMUSG00000039630Hnrnpu10096.883ENSPPAG00000038652HNRNPU10096.883Pan_paniscus
ENSMUSG00000039630Hnrnpu10094.068ENSPPRG00000002662HNRNPU10094.068Panthera_pardus
ENSMUSG00000039630Hnrnpu10096.883ENSPTRG00000002182HNRNPU10096.883Pan_troglodytes
ENSMUSG00000039630Hnrnpu10096.509ENSPANG00000011643HNRNPU10096.509Papio_anubis
ENSMUSG00000039630Hnrnpu7564.363ENSPKIG00000006885hnrnpua7866.667Paramormyrops_kingsleyae
ENSMUSG00000039630Hnrnpu9958.002ENSPKIG00000022332hnrnpub7864.697Paramormyrops_kingsleyae
ENSMUSG00000039630Hnrnpu10090.095ENSPCIG00000008657HNRNPU9990.211Phascolarctos_cinereus
ENSMUSG00000039630Hnrnpu5964.043ENSPFOG00000002908hnrnpub8056.402Poecilia_formosa
ENSMUSG00000039630Hnrnpu7654.185ENSPLAG00000004160hnrnpub8056.422Poecilia_latipinna
ENSMUSG00000039630Hnrnpu10094.900ENSPCOG00000018655-10094.154Propithecus_coquereli
ENSMUSG00000039630Hnrnpu10090.954ENSPCOG00000003883-10091.202Propithecus_coquereli
ENSMUSG00000039630Hnrnpu10094.068ENSPVAG00000002581HNRNPU10094.068Pteropus_vampyrus
ENSMUSG00000039630Hnrnpu7978.723ENSPNYG00000021642hnrnpub8678.723Pundamilia_nyererei
ENSMUSG00000039630Hnrnpu9956.471ENSPNAG00000001055hnrnpub7964.353Pygocentrus_nattereri
ENSMUSG00000039630Hnrnpu10099.375ENSRNOG00000033790Hnrnpu10099.375Rattus_norvegicus
ENSMUSG00000039630Hnrnpu10095.885ENSRBIG00000031519HNRNPU10095.885Rhinopithecus_bieti
ENSMUSG00000039630Hnrnpu10096.159ENSRROG00000041642HNRNPU10096.159Rhinopithecus_roxellana
ENSMUSG00000039630Hnrnpu9957.362ENSSFOG00015001124hnrnpub7667.044Scleropages_formosus
ENSMUSG00000039630Hnrnpu9560.236ENSSFOG00015019004hnrnpu7766.667Scleropages_formosus
ENSMUSG00000039630Hnrnpu7061.593ENSSMAG00000003607hnrnpub7754.255Scophthalmus_maximus
ENSMUSG00000039630Hnrnpu7061.239ENSSDUG00000005912hnrnpub7956.372Seriola_dumerili
ENSMUSG00000039630Hnrnpu7061.062ENSSLDG00000004899hnrnpub7956.222Seriola_lalandi_dorsalis
ENSMUSG00000039630Hnrnpu10077.658ENSSPUG00000011393HNRNPU10078.606Sphenodon_punctatus
ENSMUSG00000039630Hnrnpu6961.279ENSSPAG00000011853hnrnpub8056.692Stegastes_partitus
ENSMUSG00000039630Hnrnpu10096.406ENSSSCG00000010877HNRNPU10096.406Sus_scrofa
ENSMUSG00000039630Hnrnpu7161.034ENSTRUG00000007759hnrnpub7758.280Takifugu_rubripes
ENSMUSG00000039630Hnrnpu8076.744ENSTNIG00000009725hnrnpub9076.744Tetraodon_nigroviridis
ENSMUSG00000039630Hnrnpu70100.000ENSTTRG00000005281HNRNPU71100.000Tursiops_truncatus
ENSMUSG00000039630Hnrnpu10094.431ENSUAMG00000021120HNRNPU10094.431Ursus_americanus
ENSMUSG00000039630Hnrnpu9984.837ENSUMAG00000012322HNRNPU9794.662Ursus_maritimus
ENSMUSG00000039630Hnrnpu8092.481ENSVPAG00000010520HNRNPU9192.481Vicugna_pacos
ENSMUSG00000039630Hnrnpu10096.654ENSVVUG00000026524HNRNPU10096.654Vulpes_vulpes
ENSMUSG00000039630Hnrnpu9967.195ENSXETG00000011386hnrnpu9968.530Xenopus_tropicalis
ENSMUSG00000039630Hnrnpu7653.382ENSXMAG00000010356hnrnpub8056.250Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II-ISOProcess
GO:0000166nucleotide binding-IEAFunction
GO:0000228nuclear chromosome-ISOComponent
GO:0000381regulation of alternative mRNA splicing, via spliceosome-ISOProcess
GO:0000775chromosome, centromeric region-IEAComponent
GO:0000776kinetochore-ISOComponent
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding18332112.IDAFunction
GO:0000993RNA polymerase II complex binding-ISOFunction
GO:0001097TFIIH-class transcription factor complex binding-ISOFunction
GO:0003677DNA binding-ISOFunction
GO:0003682chromatin binding-ISOFunction
GO:0003690double-stranded DNA binding-ISOFunction
GO:0003697single-stranded DNA binding-ISOFunction
GO:0003714transcription corepressor activity-ISOFunction
GO:0003723RNA binding20833368.26244333.28784777.IDAFunction
GO:0003723RNA binding-ISOFunction
GO:0003725double-stranded RNA binding-ISOFunction
GO:0003727single-stranded RNA binding-ISOFunction
GO:0003730mRNA 3'-UTR binding-ISOFunction
GO:0003779actin binding-ISOFunction
GO:0005515protein binding18495661.19129230.22162999.28784777.IPIFunction
GO:0005524ATP binding-ISOFunction
GO:0005634nucleus18332112.22162999.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0005694chromosome-IEAComponent
GO:0005697telomerase holoenzyme complex-ISOComponent
GO:0005737cytoplasm-IEAComponent
GO:0005813centrosome-ISOComponent
GO:0005856cytoskeleton-IEAComponent
GO:0006325chromatin organization-IEAProcess
GO:0006397mRNA processing-IEAProcess
GO:0007049cell cycle-IEAProcess
GO:0007275multicellular organism development-IEAProcess
GO:0007346regulation of mitotic cell cycle-ISOProcess
GO:0008143poly(A) binding-ISOFunction
GO:0008380RNA splicing-IEAProcess
GO:0009048dosage compensation by inactivation of X chromosome20833368.IMPProcess
GO:0009986cell surface-ISOComponent
GO:0010628positive regulation of gene expression-ISOProcess
GO:0016363nuclear matrix-ISOComponent
GO:0016607nuclear speck-ISOComponent
GO:0017069snRNA binding-ISOFunction
GO:0017130poly(C) RNA binding-ISOFunction
GO:0030154cell differentiation-IEAProcess
GO:0030496midbody-ISOComponent
GO:0031490chromatin DNA binding-ISOFunction
GO:0032211negative regulation of telomere maintenance via telomerase-ISOProcess
GO:0032922circadian regulation of gene expression18332112.IDAProcess
GO:0032991protein-containing complex-ISOComponent
GO:0033673negative regulation of kinase activity-ISOProcess
GO:0034046poly(G) binding-ISOFunction
GO:0034244negative regulation of transcription elongation from RNA polymerase II promoter-ISOProcess
GO:0036002pre-mRNA binding-ISOFunction
GO:0036464cytoplasmic ribonucleoprotein granule-ISOComponent
GO:0042802identical protein binding-ISOFunction
GO:0043021ribonucleoprotein complex binding-ISOFunction
GO:0043565sequence-specific DNA binding21235343.IDAFunction
GO:0044877protein-containing complex binding-ISOFunction
GO:0045944positive regulation of transcription by RNA polymerase II22162999.IDAProcess
GO:0045944positive regulation of transcription by RNA polymerase II21235343.IMPProcess
GO:0045944positive regulation of transcription by RNA polymerase II-ISOProcess
GO:0048255mRNA stabilization-ISOProcess
GO:0048511rhythmic process-IEAProcess
GO:0051301cell division-IEAProcess
GO:0051457maintenance of protein location in nucleus-ISOProcess
GO:0055013cardiac muscle cell development26039991.IMPProcess
GO:0070034telomerase RNA binding-ISOFunction
GO:0070934CRD-mediated mRNA stabilization-ISOProcess
GO:0070937CRD-mediated mRNA stability complex-ISOComponent
GO:0071013catalytic step 2 spliceosome-ISOComponent
GO:0071385cellular response to glucocorticoid stimulus-ISOProcess
GO:0071549cellular response to dexamethasone stimulus-ISOProcess
GO:0072686mitotic spindle-ISOComponent
GO:0090336positive regulation of brown fat cell differentiation28784777.IMPProcess
GO:0090575RNA polymerase II transcription factor complex-ISOComponent
GO:0098577inactive sex chromosome20833368.IDAComponent
GO:0098577inactive sex chromosome-ISOComponent
GO:0098963dendritic transport of messenger ribonucleoprotein complex15312650.IDAProcess
GO:0098963dendritic transport of messenger ribonucleoprotein complex15312650.IMPProcess
GO:0099122RNA polymerase II C-terminal domain binding21235343.IDAFunction
GO:1901673regulation of mitotic spindle assembly-ISOProcess
GO:1902275regulation of chromatin organization-ISOProcess
GO:1902425positive regulation of attachment of mitotic spindle microtubules to kinetochore-ISOProcess
GO:1902889protein localization to spindle microtubule-ISOProcess
GO:1990023mitotic spindle midzone-ISOComponent
GO:1990280RNA localization to chromatin20833368.IMPProcess
GO:1990498mitotic spindle microtubule-ISOComponent
GO:1990830cellular response to leukemia inhibitory factor21235343.IDAProcess
GO:1990837sequence-specific double-stranded DNA binding-ISOFunction
GO:1990841promoter-specific chromatin binding21235343.IDAFunction
GO:1990841promoter-specific chromatin binding-ISOFunction
GO:1990845adaptive thermogenesis28784777.IMPProcess
GO:1990904ribonucleoprotein complex-ISOComponent
GO:2000373positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity-ISOProcess
GO:2000648positive regulation of stem cell proliferation20833368.IMPProcess
GO:2000737negative regulation of stem cell differentiation21235343.IMPProcess
GO:2000737negative regulation of stem cell differentiation-ISOProcess

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