EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039771 (Gene tree)
Gene ID: 20022
Gene Symbol: Polr2j
Alias: 14.5kDa|RNA polymerase II subunit RPB14|Rpb11a|Rpo2-4
Full Name: polymerase (RNA) II (DNA directed) polypeptide J
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 6317 bases
Position: chr5:136116631-136122947
Accession: 109582
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000106757	RNA_pol_L_2	PF13656.6	6.1e-29	1	1
ENSMUSP00000038505	RNA_pol_L_2	PF13656.6	6.9e-29	1	1
ENSMUSP00000106759	RNA_pol_L_2	PF13656.6	5.2e-18	1	1
ENSMUSP00000106757	RNA_pol_L	PF01193.24	6.9e-10	1	1
ENSMUSP00000038505	RNA_pol_L	PF01193.24	7.6e-10	1	1
ENSMUSP00000106759	RNA_pol_L	PF01193.24	0.00048	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000111127	-	900	-	ENSMUSP00000106757	111 (aa)	-	D3YZ20
ENSMUST00000041366	-	646	-	ENSMUSP00000038505	117 (aa)	-	Q6PI63
ENSMUST00000111129	-	474	-	ENSMUSP00000106759	87 (aa)	-	D3YZ19

Gene Model

Click here to download ENSMUSG00000039771's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03020	RNA polymerase	KEGG
mmu05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039771's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000039771	Polr2j	85	33.010	ENSMUSG00000029642	Polr1d	77	33.010

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039771	Polr2j	99	97.273	ENSG00000228049	POLR2J2	94	95.413	Homo_sapiens
ENSMUSG00000039771	Polr2j	100	100.000	ENSG00000005075	POLR2J	100	100.000	Homo_sapiens
ENSMUSG00000039771	Polr2j	100	94.872	ENSAPOG00000019538	polr2j	100	94.872	Acanthochromis_polyacanthus
ENSMUSG00000039771	Polr2j	96	100.000	ENSAMEG00000015480	-	100	92.126	Ailuropoda_melanoleuca
ENSMUSG00000039771	Polr2j	95	71.963	ENSACIG00000014549	POLR2J2	91	71.818	Amphilophus_citrinellus
ENSMUSG00000039771	Polr2j	100	94.017	ENSAOCG00000006937	polr2j	100	94.017	Amphiprion_ocellaris
ENSMUSG00000039771	Polr2j	100	94.872	ENSAPEG00000021761	polr2j	100	94.872	Amphiprion_percula
ENSMUSG00000039771	Polr2j	100	94.872	ENSATEG00000009731	polr2j	100	94.872	Anabas_testudineus
ENSMUSG00000039771	Polr2j	100	94.872	ENSATEG00000013312	-	100	94.872	Anabas_testudineus
ENSMUSG00000039771	Polr2j	86	98.020	ENSAPLG00000003744	-	100	98.020	Anas_platyrhynchos
ENSMUSG00000039771	Polr2j	100	90.598	ENSACAG00000000251	POLR2J	100	90.598	Anolis_carolinensis
ENSMUSG00000039771	Polr2j	100	94.872	ENSACLG00000014564	polr2j	100	94.872	Astatotilapia_calliptera
ENSMUSG00000039771	Polr2j	100	96.581	ENSAMXG00000007517	polr2j	100	96.581	Astyanax_mexicanus
ENSMUSG00000039771	Polr2j	66	68.493	ENSBTAG00000048046	-	61	68.493	Bos_taurus
ENSMUSG00000039771	Polr2j	94	71.154	WBGene00012187	rpb-11	89	70.000	Caenorhabditis_elegans
ENSMUSG00000039771	Polr2j	100	100.000	ENSCJAG00000016203	-	100	100.000	Callithrix_jacchus
ENSMUSG00000039771	Polr2j	100	100.000	ENSCAFG00000013683	-	100	100.000	Canis_familiaris
ENSMUSG00000039771	Polr2j	85	100.000	ENSTSYG00000029243	-	85	100.000	Carlito_syrichta
ENSMUSG00000039771	Polr2j	100	100.000	ENSCPOG00000001401	-	100	100.000	Cavia_porcellus
ENSMUSG00000039771	Polr2j	100	100.000	ENSCATG00000016595	-	100	100.000	Cercocebus_atys
ENSMUSG00000039771	Polr2j	100	100.000	ENSCLAG00000005238	-	100	100.000	Chinchilla_lanigera
ENSMUSG00000039771	Polr2j	100	100.000	ENSCSAG00000018092	-	100	100.000	Chlorocebus_sabaeus
ENSMUSG00000039771	Polr2j	100	81.197	ENSCING00000020531	-	100	81.197	Ciona_intestinalis
ENSMUSG00000039771	Polr2j	100	81.197	ENSCSAVG00000006948	-	100	81.197	Ciona_savignyi
ENSMUSG00000039771	Polr2j	100	100.000	ENSCGRG00001012814	Polr2j	100	100.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000039771	Polr2j	100	84.615	ENSCGRG00000008433	Polr2j	100	84.615	Cricetulus_griseus_crigri
ENSMUSG00000039771	Polr2j	100	94.017	ENSCSEG00000020352	polr2j	100	94.017	Cynoglossus_semilaevis
ENSMUSG00000039771	Polr2j	100	94.017	ENSCVAG00000014267	polr2j	100	94.017	Cyprinodon_variegatus
ENSMUSG00000039771	Polr2j	100	95.726	ENSDARG00000035146	polr2j	100	95.726	Danio_rerio
ENSMUSG00000039771	Polr2j	100	100.000	ENSDORG00000005934	Polr2j	100	100.000	Dipodomys_ordii
ENSMUSG00000039771	Polr2j	98	78.261	FBgn0032634	Rpb11	98	78.261	Drosophila_melanogaster
ENSMUSG00000039771	Polr2j	100	86.207	ENSEBUG00000016100	polr2j	100	86.207	Eptatretus_burgeri
ENSMUSG00000039771	Polr2j	100	100.000	ENSEASG00005016864	-	100	100.000	Equus_asinus_asinus
ENSMUSG00000039771	Polr2j	100	95.726	ENSELUG00000012822	polr2j	100	95.726	Esox_lucius
ENSMUSG00000039771	Polr2j	100	100.000	ENSFCAG00000000377	-	100	100.000	Felis_catus
ENSMUSG00000039771	Polr2j	100	100.000	ENSFALG00000009523	POLR2J	100	100.000	Ficedula_albicollis
ENSMUSG00000039771	Polr2j	100	100.000	ENSFDAG00000010507	-	100	100.000	Fukomys_damarensis
ENSMUSG00000039771	Polr2j	100	94.872	ENSFHEG00000006625	polr2j	100	94.872	Fundulus_heteroclitus
ENSMUSG00000039771	Polr2j	100	94.872	ENSGMOG00000018207	polr2j	100	94.872	Gadus_morhua
ENSMUSG00000039771	Polr2j	100	100.000	ENSGALG00000030808	-	100	100.000	Gallus_gallus
ENSMUSG00000039771	Polr2j	100	94.872	ENSGAFG00000019555	polr2j	100	94.872	Gambusia_affinis
ENSMUSG00000039771	Polr2j	100	94.872	ENSGACG00000003310	polr2j	100	94.872	Gasterosteus_aculeatus
ENSMUSG00000039771	Polr2j	97	90.265	ENSGAGG00000018304	-	96	90.265	Gopherus_agassizii
ENSMUSG00000039771	Polr2j	85	95.000	ENSGGOG00000004519	-	80	95.000	Gorilla_gorilla
ENSMUSG00000039771	Polr2j	100	94.872	ENSHBUG00000008467	polr2j	100	94.872	Haplochromis_burtoni
ENSMUSG00000039771	Polr2j	100	100.000	ENSHGLG00000013598	POLR2J	100	100.000	Heterocephalus_glaber_female
ENSMUSG00000039771	Polr2j	100	100.000	ENSHGLG00100011242	POLR2J	100	100.000	Heterocephalus_glaber_male
ENSMUSG00000039771	Polr2j	100	94.872	ENSHCOG00000014827	polr2j	68	94.872	Hippocampus_comes
ENSMUSG00000039771	Polr2j	100	96.581	ENSIPUG00000023960	polr2j	100	96.581	Ictalurus_punctatus
ENSMUSG00000039771	Polr2j	100	100.000	ENSSTOG00000006377	POLR2J	100	100.000	Ictidomys_tridecemlineatus
ENSMUSG00000039771	Polr2j	100	94.872	ENSJJAG00000018834	-	100	94.872	Jaculus_jaculus
ENSMUSG00000039771	Polr2j	100	100.000	ENSJJAG00000013854	-	100	100.000	Jaculus_jaculus
ENSMUSG00000039771	Polr2j	100	94.872	ENSKMAG00000014581	polr2j	79	94.872	Kryptolebias_marmoratus
ENSMUSG00000039771	Polr2j	100	94.872	ENSLBEG00000005885	polr2j	100	94.872	Labrus_bergylta
ENSMUSG00000039771	Polr2j	100	96.581	ENSLOCG00000001885	polr2j	89	96.581	Lepisosteus_oculatus
ENSMUSG00000039771	Polr2j	100	100.000	ENSLAFG00000021507	-	100	100.000	Loxodonta_africana
ENSMUSG00000039771	Polr2j	100	100.000	ENSMMUG00000012019	POLR2J	100	100.000	Macaca_mulatta
ENSMUSG00000039771	Polr2j	100	94.872	ENSMAMG00000009374	polr2j	100	94.872	Mastacembelus_armatus
ENSMUSG00000039771	Polr2j	100	94.872	ENSMZEG00005011932	polr2j	100	94.872	Maylandia_zebra
ENSMUSG00000039771	Polr2j	100	100.000	ENSMGAG00000003534	POLR2J	100	100.000	Meleagris_gallopavo
ENSMUSG00000039771	Polr2j	100	100.000	ENSMAUG00000013049	Polr2j	100	100.000	Mesocricetus_auratus
ENSMUSG00000039771	Polr2j	87	91.753	ENSMICG00000026811	-	98	91.753	Microcebus_murinus
ENSMUSG00000039771	Polr2j	100	100.000	ENSMOCG00000001294	Polr2j	100	100.000	Microtus_ochrogaster
ENSMUSG00000039771	Polr2j	100	94.017	ENSMMOG00000013265	polr2j	100	94.017	Mola_mola
ENSMUSG00000039771	Polr2j	100	96.522	ENSMODG00000013617	-	100	91.406	Monodelphis_domestica
ENSMUSG00000039771	Polr2j	100	94.872	ENSMALG00000020749	polr2j	100	94.872	Monopterus_albus
ENSMUSG00000039771	Polr2j	100	100.000	MGP_CAROLIEiJ_G0027851	Polr2j	100	100.000	Mus_caroli
ENSMUSG00000039771	Polr2j	100	100.000	MGP_PahariEiJ_G0024434	Polr2j	100	100.000	Mus_pahari
ENSMUSG00000039771	Polr2j	100	100.000	MGP_SPRETEiJ_G0028853	Polr2j	100	100.000	Mus_spretus
ENSMUSG00000039771	Polr2j	100	100.000	ENSMLUG00000010467	POLR2J	100	100.000	Myotis_lucifugus
ENSMUSG00000039771	Polr2j	100	100.000	ENSNGAG00000023412	Polr2j	100	100.000	Nannospalax_galili
ENSMUSG00000039771	Polr2j	69	90.909	ENSNBRG00000006580	polr2j	59	90.909	Neolamprologus_brichardi
ENSMUSG00000039771	Polr2j	100	100.000	ENSODEG00000015648	-	100	100.000	Octodon_degus
ENSMUSG00000039771	Polr2j	100	76.923	ENSODEG00000008559	-	100	76.923	Octodon_degus
ENSMUSG00000039771	Polr2j	100	94.872	ENSONIG00000000259	polr2j	100	94.872	Oreochromis_niloticus
ENSMUSG00000039771	Polr2j	100	97.436	ENSOANG00000020912	POLR2J	100	97.436	Ornithorhynchus_anatinus
ENSMUSG00000039771	Polr2j	99	99.091	ENSOCUG00000023609	POLR2J	100	92.126	Oryctolagus_cuniculus
ENSMUSG00000039771	Polr2j	100	94.872	ENSORLG00000029046	polr2j	83	94.872	Oryzias_latipes
ENSMUSG00000039771	Polr2j	100	94.872	ENSORLG00020007625	polr2j	83	94.872	Oryzias_latipes_hni
ENSMUSG00000039771	Polr2j	100	94.872	ENSORLG00015003457	polr2j	83	94.872	Oryzias_latipes_hsok
ENSMUSG00000039771	Polr2j	100	94.017	ENSOMEG00000002097	polr2j	100	94.017	Oryzias_melastigma
ENSMUSG00000039771	Polr2j	99	74.775	ENSOGAG00000008250	-	100	71.875	Otolemur_garnettii
ENSMUSG00000039771	Polr2j	100	100.000	ENSOARG00000014204	-	98	100.000	Ovis_aries
ENSMUSG00000039771	Polr2j	100	100.000	ENSPPRG00000012439	-	100	100.000	Panthera_pardus
ENSMUSG00000039771	Polr2j	97	91.228	ENSPTIG00000018714	-	100	97.087	Panthera_tigris_altaica
ENSMUSG00000039771	Polr2j	85	99.000	ENSPSIG00000010173	-	100	99.000	Pelodiscus_sinensis
ENSMUSG00000039771	Polr2j	100	94.872	ENSPMGG00000021256	polr2j	100	94.872	Periophthalmus_magnuspinnatus
ENSMUSG00000039771	Polr2j	100	100.000	ENSPEMG00000015733	Polr2j	100	100.000	Peromyscus_maniculatus_bairdii
ENSMUSG00000039771	Polr2j	100	100.000	ENSPCIG00000009026	-	100	100.000	Phascolarctos_cinereus
ENSMUSG00000039771	Polr2j	100	94.872	ENSPFOG00000012001	polr2j	99	94.872	Poecilia_formosa
ENSMUSG00000039771	Polr2j	100	94.872	ENSPLAG00000014075	polr2j	100	94.872	Poecilia_latipinna
ENSMUSG00000039771	Polr2j	100	94.872	ENSPMEG00000020585	polr2j	100	94.872	Poecilia_mexicana
ENSMUSG00000039771	Polr2j	100	94.872	ENSPREG00000015255	polr2j	100	94.872	Poecilia_reticulata
ENSMUSG00000039771	Polr2j	100	100.000	ENSPCOG00000024573	-	100	100.000	Propithecus_coquereli
ENSMUSG00000039771	Polr2j	99	99.091	ENSPVAG00000017770	-	63	99.091	Pteropus_vampyrus
ENSMUSG00000039771	Polr2j	100	94.872	ENSPNYG00000014832	polr2j	100	94.872	Pundamilia_nyererei
ENSMUSG00000039771	Polr2j	100	94.017	ENSPNAG00000016595	polr2j	100	94.017	Pygocentrus_nattereri
ENSMUSG00000039771	Polr2j	100	100.000	ENSRNOG00000001430	Polr2j	100	100.000	Rattus_norvegicus
ENSMUSG00000039771	Polr2j	100	100.000	ENSSBOG00000025579	-	100	100.000	Saimiri_boliviensis_boliviensis
ENSMUSG00000039771	Polr2j	80	98.571	ENSSHAG00000010443	-	81	100.000	Sarcophilus_harrisii
ENSMUSG00000039771	Polr2j	96	96.262	ENSSFOG00015003371	polr2j	83	94.495	Scleropages_formosus
ENSMUSG00000039771	Polr2j	100	94.872	ENSSMAG00000006729	polr2j	100	94.872	Scophthalmus_maximus
ENSMUSG00000039771	Polr2j	100	94.872	ENSSDUG00000018490	polr2j	100	94.872	Seriola_dumerili
ENSMUSG00000039771	Polr2j	100	94.872	ENSSLDG00000022354	polr2j	100	94.872	Seriola_lalandi_dorsalis
ENSMUSG00000039771	Polr2j	100	100.000	ENSSPUG00000010802	-	100	100.000	Sphenodon_punctatus
ENSMUSG00000039771	Polr2j	100	94.872	ENSSPAG00000021953	polr2j	100	94.872	Stegastes_partitus
ENSMUSG00000039771	Polr2j	100	100.000	ENSSSCG00000007688	-	100	100.000	Sus_scrofa
ENSMUSG00000039771	Polr2j	100	82.906	ENSSSCG00000003703	-	83	82.906	Sus_scrofa
ENSMUSG00000039771	Polr2j	79	100.000	ENSTGUG00000004510	-	100	100.000	Taeniopygia_guttata
ENSMUSG00000039771	Polr2j	85	99.000	ENSTGUG00000004501	-	100	99.000	Taeniopygia_guttata
ENSMUSG00000039771	Polr2j	100	95.726	ENSTRUG00000020842	polr2j	100	95.726	Takifugu_rubripes
ENSMUSG00000039771	Polr2j	100	94.872	ENSTNIG00000002994	polr2j	100	94.872	Tetraodon_nigroviridis
ENSMUSG00000039771	Polr2j	100	80.180	ENSTBEG00000005797	-	73	80.180	Tupaia_belangeri
ENSMUSG00000039771	Polr2j	100	100.000	ENSUAMG00000011310	-	100	100.000	Ursus_americanus
ENSMUSG00000039771	Polr2j	100	100.000	ENSUMAG00000012594	-	100	100.000	Ursus_maritimus
ENSMUSG00000039771	Polr2j	100	98.291	ENSXETG00000001108	polr2j	100	98.291	Xenopus_tropicalis
ENSMUSG00000039771	Polr2j	100	94.872	ENSXMAG00000012422	polr2j	100	94.872	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001055	RNA polymerase II activity	21873635.	IBA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0005515	protein binding	9034305.	IPI	Function
GO:0005634	nucleus	16141233.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005665	RNA polymerase II, core complex	21873635.	IBA	Component
GO:0005665	RNA polymerase II, core complex	9099876.	IDA	Component
GO:0005665	RNA polymerase II, core complex	-	ISO	Component
GO:0006351	transcription, DNA-templated	-	IEA	Process
GO:0006366	transcription by RNA polymerase II	-	ISO	Process
GO:0030275	LRR domain binding	-	ISO	Function
GO:0046983	protein dimerization activity	-	IEA	Function