EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039810 (Gene tree)
Gene ID: 103284
Gene Symbol: Zc3h10
Alias: -
Full Name: zinc finger CCCH type containing 10
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 5812 bases
Position: chr10:128541963-128547774
Accession: 2143670
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000042727	zf-CCCH	PF00642.24	3.5e-12	1	2
ENSMUSP00000042727	zf-CCCH	PF00642.24	3.5e-12	2	2
ENSMUSP00000151278	zf-CCCH	PF00642.24	3.1e-06	1	1
ENSMUSP00000042727	zf-CCCH_2	PF14608.6	6.7e-09	1	3
ENSMUSP00000042727	zf-CCCH_2	PF14608.6	6.7e-09	2	3
ENSMUSP00000042727	zf-CCCH_2	PF14608.6	6.7e-09	3	3
ENSMUSP00000151278	zf-CCCH_2	PF14608.6	1.9e-06	1	2
ENSMUSP00000151278	zf-CCCH_2	PF14608.6	1.9e-06	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000152539	-	992	-	ENSMUSP00000151278	135 (aa)	-	A0A1W2P6J1
ENSMUST00000040572	-	3721	XM_006513013	ENSMUSP00000042727	435 (aa)	XP_006513076	Q8R205
ENSMUST00000135226	-	757	-	-	- (aa)	-	-
ENSMUST00000133458	-	565	-	ENSMUSP00000151312	49 (aa)	-	A0A1W2P6L6

Gene Model

Click here to download ENSMUSG00000039810's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039810's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039810	Zc3h10	100	98.519	ENSG00000135482	ZC3H10	100	97.727	Homo_sapiens
ENSMUSG00000039810	Zc3h10	83	76.852	ENSAPOG00000013862	zc3h10	75	75.463	Acanthochromis_polyacanthus
ENSMUSG00000039810	Zc3h10	100	97.778	ENSAMEG00000019365	ZC3H10	100	97.471	Ailuropoda_melanoleuca
ENSMUSG00000039810	Zc3h10	82	76.389	ENSACIG00000022311	zc3h10	100	55.340	Amphilophus_citrinellus
ENSMUSG00000039810	Zc3h10	83	76.852	ENSAOCG00000021782	zc3h10	93	61.677	Amphiprion_ocellaris
ENSMUSG00000039810	Zc3h10	83	76.852	ENSAPEG00000010972	zc3h10	93	61.677	Amphiprion_percula
ENSMUSG00000039810	Zc3h10	85	73.478	ENSATEG00000024754	zc3h10	61	77.344	Anabas_testudineus
ENSMUSG00000039810	Zc3h10	100	73.624	ENSACAG00000005020	ZC3H10	95	78.841	Anolis_carolinensis
ENSMUSG00000039810	Zc3h10	100	97.037	ENSANAG00000004774	ZC3H10	100	96.782	Aotus_nancymaae
ENSMUSG00000039810	Zc3h10	82	76.562	ENSACLG00000001913	zc3h10	86	47.619	Astatotilapia_calliptera
ENSMUSG00000039810	Zc3h10	85	71.739	ENSAMXG00000000266	zc3h10	60	76.744	Astyanax_mexicanus
ENSMUSG00000039810	Zc3h10	100	97.037	ENSBTAG00000009542	ZC3H10	100	96.552	Bos_taurus
ENSMUSG00000039810	Zc3h10	100	97.778	ENSCJAG00000045638	ZC3H10	100	97.241	Callithrix_jacchus
ENSMUSG00000039810	Zc3h10	100	96.552	ENSCAFG00000000104	ZC3H10	100	96.552	Canis_familiaris
ENSMUSG00000039810	Zc3h10	100	96.552	ENSCAFG00020025996	ZC3H10	100	96.552	Canis_lupus_dingo
ENSMUSG00000039810	Zc3h10	100	97.037	ENSCHIG00000003359	ZC3H10	100	96.782	Capra_hircus
ENSMUSG00000039810	Zc3h10	100	98.519	ENSTSYG00000014379	ZC3H10	100	97.701	Carlito_syrichta
ENSMUSG00000039810	Zc3h10	100	96.296	ENSCAPG00000002936	ZC3H10	100	95.990	Cavia_aperea
ENSMUSG00000039810	Zc3h10	100	97.037	ENSCPOG00000032639	ZC3H10	100	96.552	Cavia_porcellus
ENSMUSG00000039810	Zc3h10	100	97.037	ENSCCAG00000020214	-	100	96.552	Cebus_capucinus
ENSMUSG00000039810	Zc3h10	100	99.259	ENSCATG00000012691	ZC3H10	100	97.241	Cercocebus_atys
ENSMUSG00000039810	Zc3h10	100	97.241	ENSCLAG00000011346	ZC3H10	100	97.241	Chinchilla_lanigera
ENSMUSG00000039810	Zc3h10	100	99.259	ENSCSAG00000018893	ZC3H10	100	97.241	Chlorocebus_sabaeus
ENSMUSG00000039810	Zc3h10	100	72.644	ENSCPBG00000012828	ZC3H10	100	73.333	Chrysemys_picta_bellii
ENSMUSG00000039810	Zc3h10	63	45.455	ENSCSAVG00000001429	-	61	46.715	Ciona_savignyi
ENSMUSG00000039810	Zc3h10	100	99.259	ENSCANG00000007357	ZC3H10	100	97.241	Colobus_angolensis_palliatus
ENSMUSG00000039810	Zc3h10	100	97.778	ENSCGRG00001004310	Zc3h10	100	97.701	Cricetulus_griseus_chok1gshd
ENSMUSG00000039810	Zc3h10	100	97.778	ENSCGRG00000015981	Zc3h10	100	97.701	Cricetulus_griseus_crigri
ENSMUSG00000039810	Zc3h10	91	71.918	ENSCSEG00000003687	zc3h10	86	45.885	Cynoglossus_semilaevis
ENSMUSG00000039810	Zc3h10	89	75.397	ENSCVAG00000001548	zc3h10	86	46.154	Cyprinodon_variegatus
ENSMUSG00000039810	Zc3h10	83	75.000	ENSDARG00000030335	zc3h10	87	77.519	Danio_rerio
ENSMUSG00000039810	Zc3h10	100	98.519	ENSDNOG00000040571	ZC3H10	100	97.241	Dasypus_novemcinctus
ENSMUSG00000039810	Zc3h10	100	96.092	ENSDORG00000001081	Zc3h10	100	96.092	Dipodomys_ordii
ENSMUSG00000039810	Zc3h10	100	97.037	ENSEASG00005003533	ZC3H10	100	97.011	Equus_asinus_asinus
ENSMUSG00000039810	Zc3h10	100	97.241	ENSECAG00000013003	ZC3H10	100	97.241	Equus_caballus
ENSMUSG00000039810	Zc3h10	59	88.750	ENSFALG00000015254	-	99	88.496	Ficedula_albicollis
ENSMUSG00000039810	Zc3h10	100	97.011	ENSFDAG00000012558	ZC3H10	100	97.011	Fukomys_damarensis
ENSMUSG00000039810	Zc3h10	89	74.219	ENSFHEG00000021836	zc3h10	94	64.935	Fundulus_heteroclitus
ENSMUSG00000039810	Zc3h10	67	75.824	ENSGMOG00000008567	zc3h10	52	74.797	Gadus_morhua
ENSMUSG00000039810	Zc3h10	100	73.333	ENSGALG00000037941	ZC3H10	100	73.394	Gallus_gallus
ENSMUSG00000039810	Zc3h10	89	75.000	ENSGAFG00000002137	zc3h10	81	46.122	Gambusia_affinis
ENSMUSG00000039810	Zc3h10	88	76.984	ENSGACG00000000638	zc3h10	90	66.334	Gasterosteus_aculeatus
ENSMUSG00000039810	Zc3h10	100	73.333	ENSGAGG00000020590	ZC3H10	100	73.563	Gopherus_agassizii
ENSMUSG00000039810	Zc3h10	100	97.778	ENSGGOG00000039636	ZC3H10	100	96.782	Gorilla_gorilla
ENSMUSG00000039810	Zc3h10	100	97.471	ENSHGLG00000015956	ZC3H10	100	97.471	Heterocephalus_glaber_female
ENSMUSG00000039810	Zc3h10	100	97.471	ENSHGLG00100013005	ZC3H10	100	97.471	Heterocephalus_glaber_male
ENSMUSG00000039810	Zc3h10	83	74.884	ENSHCOG00000020331	zc3h10	99	46.377	Hippocampus_comes
ENSMUSG00000039810	Zc3h10	91	59.081	ENSIPUG00000001697	zc3h10	85	74.419	Ictalurus_punctatus
ENSMUSG00000039810	Zc3h10	100	97.241	ENSSTOG00000007753	ZC3H10	100	97.241	Ictidomys_tridecemlineatus
ENSMUSG00000039810	Zc3h10	100	97.037	ENSJJAG00000001726	Zc3h10	100	96.092	Jaculus_jaculus
ENSMUSG00000039810	Zc3h10	89	75.969	ENSKMAG00000017905	zc3h10	85	45.929	Kryptolebias_marmoratus
ENSMUSG00000039810	Zc3h10	79	77.344	ENSLBEG00000018281	zc3h10	59	77.344	Labrus_bergylta
ENSMUSG00000039810	Zc3h10	100	65.831	ENSLACG00000002390	ZC3H10	100	64.237	Latimeria_chalumnae
ENSMUSG00000039810	Zc3h10	100	96.296	ENSLAFG00000014817	ZC3H10	100	96.092	Loxodonta_africana
ENSMUSG00000039810	Zc3h10	100	99.259	ENSMFAG00000027256	ZC3H10	100	97.241	Macaca_fascicularis
ENSMUSG00000039810	Zc3h10	100	99.259	ENSMMUG00000021084	ZC3H10	100	97.241	Macaca_mulatta
ENSMUSG00000039810	Zc3h10	100	99.259	ENSMNEG00000025282	ZC3H10	100	97.241	Macaca_nemestrina
ENSMUSG00000039810	Zc3h10	100	99.259	ENSMLEG00000027930	ZC3H10	100	97.241	Mandrillus_leucophaeus
ENSMUSG00000039810	Zc3h10	81	76.190	ENSMAMG00000003284	zc3h10	61	77.778	Mastacembelus_armatus
ENSMUSG00000039810	Zc3h10	100	97.778	ENSMAUG00000008505	Zc3h10	100	97.471	Mesocricetus_auratus
ENSMUSG00000039810	Zc3h10	100	97.011	ENSMOCG00000019869	Zc3h10	100	97.011	Microtus_ochrogaster
ENSMUSG00000039810	Zc3h10	83	74.627	ENSMMOG00000021874	zc3h10	86	47.412	Mola_mola
ENSMUSG00000039810	Zc3h10	85	76.959	ENSMALG00000016443	zc3h10	85	46.074	Monopterus_albus
ENSMUSG00000039810	Zc3h10	100	100.000	MGP_CAROLIEiJ_G0015942	Zc3h10	100	99.770	Mus_caroli
ENSMUSG00000039810	Zc3h10	100	99.540	MGP_PahariEiJ_G0031142	Zc3h10	100	99.540	Mus_pahari
ENSMUSG00000039810	Zc3h10	100	99.540	MGP_SPRETEiJ_G0016767	Zc3h10	100	99.540	Mus_spretus
ENSMUSG00000039810	Zc3h10	100	97.778	ENSMPUG00000018496	ZC3H10	100	97.011	Mustela_putorius_furo
ENSMUSG00000039810	Zc3h10	100	97.037	ENSMLUG00000006564	ZC3H10	100	92.644	Myotis_lucifugus
ENSMUSG00000039810	Zc3h10	100	97.471	ENSNGAG00000011848	Zc3h10	100	97.471	Nannospalax_galili
ENSMUSG00000039810	Zc3h10	79	76.562	ENSNBRG00000020931	zc3h10	86	47.521	Neolamprologus_brichardi
ENSMUSG00000039810	Zc3h10	100	91.852	ENSMEUG00000001222	ZC3H10	100	88.330	Notamacropus_eugenii
ENSMUSG00000039810	Zc3h10	100	97.011	ENSODEG00000007942	ZC3H10	100	97.011	Octodon_degus
ENSMUSG00000039810	Zc3h10	100	65.702	ENSONIG00000019154	zc3h10	90	66.830	Oreochromis_niloticus
ENSMUSG00000039810	Zc3h10	100	95.642	ENSOCUG00000017349	ZC3H10	100	95.642	Oryctolagus_cuniculus
ENSMUSG00000039810	Zc3h10	89	73.043	ENSORLG00000014596	zc3h10	87	46.138	Oryzias_latipes
ENSMUSG00000039810	Zc3h10	89	72.609	ENSORLG00020000559	zc3h10	87	45.929	Oryzias_latipes_hni
ENSMUSG00000039810	Zc3h10	91	67.480	ENSORLG00015014077	zc3h10	87	46.138	Oryzias_latipes_hsok
ENSMUSG00000039810	Zc3h10	90	72.609	ENSOMEG00000023135	zc3h10	87	46.347	Oryzias_melastigma
ENSMUSG00000039810	Zc3h10	100	95.632	ENSOGAG00000030676	ZC3H10	100	95.632	Otolemur_garnettii
ENSMUSG00000039810	Zc3h10	100	97.037	ENSOARG00000010330	ZC3H10	100	93.793	Ovis_aries
ENSMUSG00000039810	Zc3h10	100	98.519	ENSPPAG00000023790	ZC3H10	100	97.011	Pan_paniscus
ENSMUSG00000039810	Zc3h10	100	97.241	ENSPTIG00000006237	ZC3H10	100	97.241	Panthera_tigris_altaica
ENSMUSG00000039810	Zc3h10	100	98.519	ENSPTRG00000005078	ZC3H10	100	97.011	Pan_troglodytes
ENSMUSG00000039810	Zc3h10	100	99.259	ENSPANG00000029620	ZC3H10	100	97.241	Papio_anubis
ENSMUSG00000039810	Zc3h10	86	73.469	ENSPKIG00000007158	zc3h10	84	47.314	Paramormyrops_kingsleyae
ENSMUSG00000039810	Zc3h10	100	72.593	ENSPSIG00000000811	ZC3H10	87	69.892	Pelodiscus_sinensis
ENSMUSG00000039810	Zc3h10	99	67.910	ENSPMGG00000010570	zc3h10	92	64.563	Periophthalmus_magnuspinnatus
ENSMUSG00000039810	Zc3h10	100	98.519	ENSPEMG00000008278	Zc3h10	100	97.471	Peromyscus_maniculatus_bairdii
ENSMUSG00000039810	Zc3h10	100	91.111	ENSPCIG00000007018	ZC3H10	100	88.356	Phascolarctos_cinereus
ENSMUSG00000039810	Zc3h10	89	74.219	ENSPFOG00000006164	zc3h10	85	45.773	Poecilia_formosa
ENSMUSG00000039810	Zc3h10	91	66.058	ENSPLAG00000001248	zc3h10	85	45.773	Poecilia_latipinna
ENSMUSG00000039810	Zc3h10	89	74.219	ENSPMEG00000002660	zc3h10	85	45.267	Poecilia_mexicana
ENSMUSG00000039810	Zc3h10	89	74.219	ENSPREG00000015323	zc3h10	85	45.979	Poecilia_reticulata
ENSMUSG00000039810	Zc3h10	100	97.037	ENSPPYG00000004644	ZC3H10	100	77.011	Pongo_abelii
ENSMUSG00000039810	Zc3h10	100	96.322	ENSPCAG00000005636	ZC3H10	100	96.322	Procavia_capensis
ENSMUSG00000039810	Zc3h10	100	95.632	ENSPCOG00000012389	ZC3H10	100	95.632	Propithecus_coquereli
ENSMUSG00000039810	Zc3h10	100	95.862	ENSPVAG00000007566	ZC3H10	100	95.862	Pteropus_vampyrus
ENSMUSG00000039810	Zc3h10	79	76.562	ENSPNYG00000021193	zc3h10	86	47.619	Pundamilia_nyererei
ENSMUSG00000039810	Zc3h10	76	79.208	ENSPNAG00000013796	zc3h10	57	77.500	Pygocentrus_nattereri
ENSMUSG00000039810	Zc3h10	100	98.851	ENSRNOG00000040281	Zc3h10	100	98.851	Rattus_norvegicus
ENSMUSG00000039810	Zc3h10	100	98.519	ENSRBIG00000019615	ZC3H10	100	97.011	Rhinopithecus_bieti
ENSMUSG00000039810	Zc3h10	100	98.519	ENSRROG00000013225	ZC3H10	100	97.011	Rhinopithecus_roxellana
ENSMUSG00000039810	Zc3h10	100	97.778	ENSSBOG00000019876	ZC3H10	100	97.241	Saimiri_boliviensis_boliviensis
ENSMUSG00000039810	Zc3h10	100	91.111	ENSSHAG00000005568	ZC3H10	100	87.643	Sarcophilus_harrisii
ENSMUSG00000039810	Zc3h10	79	78.571	ENSSFOG00015015320	zc3h10	84	47.239	Scleropages_formosus
ENSMUSG00000039810	Zc3h10	79	75.576	ENSSMAG00000003388	zc3h10	87	45.791	Scophthalmus_maximus
ENSMUSG00000039810	Zc3h10	82	75.781	ENSSDUG00000006067	zc3h10	86	46.721	Seriola_dumerili
ENSMUSG00000039810	Zc3h10	82	75.781	ENSSLDG00000002721	zc3h10	86	46.721	Seriola_lalandi_dorsalis
ENSMUSG00000039810	Zc3h10	100	96.296	ENSSARG00000007208	ZC3H10	73	97.973	Sorex_araneus
ENSMUSG00000039810	Zc3h10	92	76.060	ENSSPUG00000014715	ZC3H10	94	77.078	Sphenodon_punctatus
ENSMUSG00000039810	Zc3h10	83	76.852	ENSSPAG00000001210	zc3h10	61	76.562	Stegastes_partitus
ENSMUSG00000039810	Zc3h10	100	97.778	ENSSSCG00000033568	ZC3H10	100	97.011	Sus_scrofa
ENSMUSG00000039810	Zc3h10	88	76.744	ENSTRUG00000009733	zc3h10	86	46.862	Takifugu_rubripes
ENSMUSG00000039810	Zc3h10	91	67.874	ENSTNIG00000014558	zc3h10	95	66.667	Tetraodon_nigroviridis
ENSMUSG00000039810	Zc3h10	100	97.778	ENSTTRG00000016415	ZC3H10	100	96.322	Tursiops_truncatus
ENSMUSG00000039810	Zc3h10	100	97.778	ENSUAMG00000010526	ZC3H10	100	92.375	Ursus_americanus
ENSMUSG00000039810	Zc3h10	100	97.778	ENSUMAG00000016780	ZC3H10	100	97.471	Ursus_maritimus
ENSMUSG00000039810	Zc3h10	100	97.778	ENSVPAG00000009524	ZC3H10	100	96.782	Vicugna_pacos
ENSMUSG00000039810	Zc3h10	100	96.552	ENSVVUG00000021999	ZC3H10	100	96.552	Vulpes_vulpes
ENSMUSG00000039810	Zc3h10	94	63.364	ENSXETG00000009476	zc3h10	95	65.155	Xenopus_tropicalis
ENSMUSG00000039810	Zc3h10	87	75.000	ENSXCOG00000018650	zc3h10	85	46.488	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0010608	posttranscriptional regulation of gene expression	-	ISO	Process
GO:0035198	miRNA binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:1903799	negative regulation of production of miRNAs involved in gene silencing by miRNA	-	ISO	Process