EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039826 (Gene tree)
Gene ID: 227682
Gene Symbol: Trub2
Alias: G430055L02Rik
Full Name: TruB pseudouridine (psi) synthase family member 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 27279 bases
Position: chr2:29761224-29788502
Accession: 2442186
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000041848	TruB_N	PF01509.18	7.7e-26	1	1
ENSMUSP00000109438	TruB_N	PF01509.18	3.7e-13	1	1
ENSMUSP00000135521	TruB_N	PF01509.18	4.4e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000148120	-	762	-	-	- (aa)	-	-
ENSMUST00000113803	-	490	-	-	- (aa)	-	-
ENSMUST00000177467	-	744	-	ENSMUSP00000135521	194 (aa)	-	H3BKT7
ENSMUST00000176167	-	412	-	-	- (aa)	-	-
ENSMUST00000113807	-	1035	XM_006497925	ENSMUSP00000109438	204 (aa)	XP_006497988	A2ARC1
ENSMUST00000156846	-	3930	-	ENSMUSP00000135464	121 (aa)	-	H3BLS1
ENSMUST00000176312	-	763	-	ENSMUSP00000134787	121 (aa)	-	H3BLS1
ENSMUST00000177133	-	806	-	ENSMUSP00000135893	121 (aa)	-	H3BLS1
ENSMUST00000175644	-	371	-	-	- (aa)	-	-
ENSMUST00000048044	-	3408	XM_006497924	ENSMUSP00000041848	331 (aa)	XP_006497987	Q91WG3

Gene Model

Click here to download ENSMUSG00000039826's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039826's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000039826	Trub2	87	30.508	ENSMUSG00000025086	Trub1	57	30.055

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039826	Trub2	100	81.571	ENSG00000167112	TRUB2	100	81.571	Homo_sapiens
ENSMUSG00000039826	Trub2	84	41.727	ENSAPOG00000018284	-	76	56.934	Acanthochromis_polyacanthus
ENSMUSG00000039826	Trub2	62	56.098	ENSAPOG00000015733	trub2	74	56.098	Acanthochromis_polyacanthus
ENSMUSG00000039826	Trub2	99	80.000	ENSAMEG00000015395	TRUB2	99	80.000	Ailuropoda_melanoleuca
ENSMUSG00000039826	Trub2	88	47.674	ENSACIG00000016500	trub2	84	51.439	Amphilophus_citrinellus
ENSMUSG00000039826	Trub2	95	48.663	ENSAOCG00000002330	trub2	82	54.317	Amphiprion_ocellaris
ENSMUSG00000039826	Trub2	84	54.676	ENSAPEG00000013177	trub2	82	54.676	Amphiprion_percula
ENSMUSG00000039826	Trub2	96	49.468	ENSATEG00000011371	trub2	92	51.701	Anabas_testudineus
ENSMUSG00000039826	Trub2	87	58.163	ENSAPLG00000009254	TRUB2	94	58.644	Anas_platyrhynchos
ENSMUSG00000039826	Trub2	92	62.745	ENSACAG00000007331	TRUB2	92	62.745	Anolis_carolinensis
ENSMUSG00000039826	Trub2	94	82.958	ENSANAG00000036234	TRUB2	100	82.958	Aotus_nancymaae
ENSMUSG00000039826	Trub2	95	46.524	ENSACLG00000010793	trub2	84	51.799	Astatotilapia_calliptera
ENSMUSG00000039826	Trub2	96	50.000	ENSAMXG00000031679	trub2	88	52.922	Astyanax_mexicanus
ENSMUSG00000039826	Trub2	53	81.609	ENSBTAG00000055269	-	79	81.609	Bos_taurus
ENSMUSG00000039826	Trub2	85	81.707	ENSBTAG00000004663	TRUB2	100	81.707	Bos_taurus
ENSMUSG00000039826	Trub2	100	80.967	ENSCJAG00000020009	TRUB2	100	80.967	Callithrix_jacchus
ENSMUSG00000039826	Trub2	99	80.000	ENSCAFG00000020068	TRUB2	99	80.000	Canis_familiaris
ENSMUSG00000039826	Trub2	92	81.461	ENSCAFG00020017325	-	100	82.022	Canis_lupus_dingo
ENSMUSG00000039826	Trub2	99	81.212	ENSCHIG00000021160	TRUB2	99	81.212	Capra_hircus
ENSMUSG00000039826	Trub2	99	83.486	ENSTSYG00000034163	TRUB2	99	83.486	Carlito_syrichta
ENSMUSG00000039826	Trub2	89	80.272	ENSCAPG00000000223	TRUB2	99	80.272	Cavia_aperea
ENSMUSG00000039826	Trub2	100	80.665	ENSCPOG00000013535	TRUB2	99	80.665	Cavia_porcellus
ENSMUSG00000039826	Trub2	97	78.750	ENSCCAG00000028463	-	98	77.160	Cebus_capucinus
ENSMUSG00000039826	Trub2	97	81.562	ENSCCAG00000026531	-	98	81.562	Cebus_capucinus
ENSMUSG00000039826	Trub2	100	81.269	ENSCATG00000038234	TRUB2	100	81.269	Cercocebus_atys
ENSMUSG00000039826	Trub2	100	83.505	ENSCLAG00000001702	TRUB2	99	82.353	Chinchilla_lanigera
ENSMUSG00000039826	Trub2	99	77.039	ENSCSAG00000014117	TRUB2	99	77.039	Chlorocebus_sabaeus
ENSMUSG00000039826	Trub2	100	80.060	ENSCHOG00000001555	TRUB2	100	80.060	Choloepus_hoffmanni
ENSMUSG00000039826	Trub2	99	60.486	ENSCPBG00000025186	TRUB2	95	60.486	Chrysemys_picta_bellii
ENSMUSG00000039826	Trub2	87	33.908	ENSCSAVG00000003930	-	90	33.220	Ciona_savignyi
ENSMUSG00000039826	Trub2	100	73.414	ENSCANG00000016135	TRUB2	100	73.414	Colobus_angolensis_palliatus
ENSMUSG00000039826	Trub2	100	89.124	ENSCGRG00001024441	Trub2	100	89.124	Cricetulus_griseus_chok1gshd
ENSMUSG00000039826	Trub2	100	89.124	ENSCGRG00000005633	Trub2	100	89.124	Cricetulus_griseus_crigri
ENSMUSG00000039826	Trub2	95	46.524	ENSCSEG00000001331	trub2	83	51.254	Cynoglossus_semilaevis
ENSMUSG00000039826	Trub2	95	47.568	ENSCVAG00000009901	trub2	83	53.430	Cyprinodon_variegatus
ENSMUSG00000039826	Trub2	95	51.075	ENSDARG00000028379	trub2	79	53.597	Danio_rerio
ENSMUSG00000039826	Trub2	91	55.814	ENSDNOG00000043967	-	92	55.814	Dasypus_novemcinctus
ENSMUSG00000039826	Trub2	99	78.659	ENSDNOG00000045679	-	99	78.659	Dasypus_novemcinctus
ENSMUSG00000039826	Trub2	99	80.665	ENSDORG00000016222	Trub2	98	82.428	Dipodomys_ordii
ENSMUSG00000039826	Trub2	81	33.824	FBgn0033060	CG7849	85	33.824	Drosophila_melanogaster
ENSMUSG00000039826	Trub2	90	81.208	ENSETEG00000009114	TRUB2	92	81.208	Echinops_telfairi
ENSMUSG00000039826	Trub2	87	37.912	ENSEBUG00000015723	trub2	85	46.053	Eptatretus_burgeri
ENSMUSG00000039826	Trub2	100	80.665	ENSEASG00005016819	TRUB2	100	80.665	Equus_asinus_asinus
ENSMUSG00000039826	Trub2	100	81.269	ENSECAG00000023520	TRUB2	100	81.269	Equus_caballus
ENSMUSG00000039826	Trub2	94	84.194	ENSEEUG00000008908	TRUB2	94	84.194	Erinaceus_europaeus
ENSMUSG00000039826	Trub2	89	51.290	ENSELUG00000002376	trub2	97	51.290	Esox_lucius
ENSMUSG00000039826	Trub2	100	78.979	ENSFCAG00000005839	TRUB2	100	78.979	Felis_catus
ENSMUSG00000039826	Trub2	80	62.879	ENSFALG00000001364	TRUB2	85	63.636	Ficedula_albicollis
ENSMUSG00000039826	Trub2	100	82.474	ENSFDAG00000021374	TRUB2	99	81.515	Fukomys_damarensis
ENSMUSG00000039826	Trub2	86	47.569	ENSFHEG00000014655	trub2	85	47.569	Fundulus_heteroclitus
ENSMUSG00000039826	Trub2	95	38.378	ENSGMOG00000000981	trub2	92	45.290	Gadus_morhua
ENSMUSG00000039826	Trub2	90	61.409	ENSGALG00000004920	TRUB2	73	61.409	Gallus_gallus
ENSMUSG00000039826	Trub2	95	47.568	ENSGAFG00000010107	trub2	88	51.186	Gambusia_affinis
ENSMUSG00000039826	Trub2	95	49.198	ENSGACG00000001476	trub2	84	53.237	Gasterosteus_aculeatus
ENSMUSG00000039826	Trub2	88	66.667	ENSGAGG00000022872	TRUB2	86	66.667	Gopherus_agassizii
ENSMUSG00000039826	Trub2	100	81.571	ENSGGOG00000014780	TRUB2	100	81.571	Gorilla_gorilla
ENSMUSG00000039826	Trub2	95	46.524	ENSHBUG00000022384	trub2	84	52.518	Haplochromis_burtoni
ENSMUSG00000039826	Trub2	99	81.818	ENSHGLG00000016715	TRUB2	99	81.818	Heterocephalus_glaber_female
ENSMUSG00000039826	Trub2	99	81.818	ENSHGLG00100016548	TRUB2	99	81.818	Heterocephalus_glaber_male
ENSMUSG00000039826	Trub2	95	49.733	ENSHCOG00000017748	trub2	85	53.957	Hippocampus_comes
ENSMUSG00000039826	Trub2	96	45.745	ENSIPUG00000017725	hdhd3	51	51.525	Ictalurus_punctatus
ENSMUSG00000039826	Trub2	99	80.734	ENSSTOG00000022617	-	99	80.734	Ictidomys_tridecemlineatus
ENSMUSG00000039826	Trub2	100	80.363	ENSSTOG00000008024	-	100	80.363	Ictidomys_tridecemlineatus
ENSMUSG00000039826	Trub2	99	75.988	ENSJJAG00000019181	Trub2	99	75.988	Jaculus_jaculus
ENSMUSG00000039826	Trub2	87	48.235	ENSKMAG00000007861	trub2	83	51.986	Kryptolebias_marmoratus
ENSMUSG00000039826	Trub2	89	50.867	ENSLBEG00000000907	trub2	83	52.500	Labrus_bergylta
ENSMUSG00000039826	Trub2	89	63.823	ENSLACG00000001515	TRUB2	87	63.823	Latimeria_chalumnae
ENSMUSG00000039826	Trub2	87	56.977	ENSLOCG00000000885	trub2	96	55.822	Lepisosteus_oculatus
ENSMUSG00000039826	Trub2	92	83.168	ENSLAFG00000002174	TRUB2	100	83.168	Loxodonta_africana
ENSMUSG00000039826	Trub2	100	80.665	ENSMFAG00000000881	TRUB2	100	80.665	Macaca_fascicularis
ENSMUSG00000039826	Trub2	100	80.363	ENSMMUG00000014146	TRUB2	100	80.363	Macaca_mulatta
ENSMUSG00000039826	Trub2	100	80.363	ENSMNEG00000011189	TRUB2	100	80.363	Macaca_nemestrina
ENSMUSG00000039826	Trub2	100	80.967	ENSMLEG00000037270	TRUB2	100	80.967	Mandrillus_leucophaeus
ENSMUSG00000039826	Trub2	95	47.849	ENSMAMG00000023643	trub2	92	53.957	Mastacembelus_armatus
ENSMUSG00000039826	Trub2	95	46.524	ENSMZEG00005016018	trub2	84	52.158	Maylandia_zebra
ENSMUSG00000039826	Trub2	60	66.500	ENSMGAG00000003894	TRUB2	100	66.500	Meleagris_gallopavo
ENSMUSG00000039826	Trub2	100	92.268	ENSMAUG00000010403	Trub2	100	90.634	Mesocricetus_auratus
ENSMUSG00000039826	Trub2	99	80.606	ENSMICG00000047032	TRUB2	99	80.606	Microcebus_murinus
ENSMUSG00000039826	Trub2	100	88.235	ENSMOCG00000014291	Trub2	99	91.776	Microtus_ochrogaster
ENSMUSG00000039826	Trub2	96	50.265	ENSMMOG00000021674	trub2	90	51.815	Mola_mola
ENSMUSG00000039826	Trub2	88	73.973	ENSMODG00000005940	TRUB2	99	73.973	Monodelphis_domestica
ENSMUSG00000039826	Trub2	91	51.803	ENSMALG00000021231	trub2	89	51.803	Monopterus_albus
ENSMUSG00000039826	Trub2	100	97.583	MGP_CAROLIEiJ_G0023368	Trub2	100	97.583	Mus_caroli
ENSMUSG00000039826	Trub2	100	96.907	MGP_PahariEiJ_G0024826	Trub2	100	96.907	Mus_pahari
ENSMUSG00000039826	Trub2	100	99.510	MGP_SPRETEiJ_G0024286	Trub2	100	99.510	Mus_spretus
ENSMUSG00000039826	Trub2	100	77.644	ENSMPUG00000013206	TRUB2	91	77.644	Mustela_putorius_furo
ENSMUSG00000039826	Trub2	99	80.303	ENSMLUG00000005256	TRUB2	99	80.303	Myotis_lucifugus
ENSMUSG00000039826	Trub2	99	85.455	ENSNGAG00000018679	Trub2	99	85.455	Nannospalax_galili
ENSMUSG00000039826	Trub2	88	48.538	ENSNBRG00000016294	trub2	84	51.799	Neolamprologus_brichardi
ENSMUSG00000039826	Trub2	100	80.060	ENSNLEG00000017556	TRUB2	100	80.060	Nomascus_leucogenys
ENSMUSG00000039826	Trub2	91	74.172	ENSMEUG00000000484	TRUB2	97	74.172	Notamacropus_eugenii
ENSMUSG00000039826	Trub2	99	77.879	ENSOPRG00000001981	TRUB2	100	77.879	Ochotona_princeps
ENSMUSG00000039826	Trub2	100	82.474	ENSODEG00000017292	TRUB2	99	80.982	Octodon_degus
ENSMUSG00000039826	Trub2	95	46.237	ENSONIG00000004230	trub2	84	51.799	Oreochromis_niloticus
ENSMUSG00000039826	Trub2	73	76.761	ENSOANG00000029023	-	83	76.471	Ornithorhynchus_anatinus
ENSMUSG00000039826	Trub2	99	79.939	ENSOCUG00000026296	TRUB2	91	80.060	Oryctolagus_cuniculus
ENSMUSG00000039826	Trub2	88	48.538	ENSORLG00000020011	trub2	84	51.786	Oryzias_latipes
ENSMUSG00000039826	Trub2	88	48.824	ENSORLG00020011028	trub2	82	51.971	Oryzias_latipes_hni
ENSMUSG00000039826	Trub2	88	48.824	ENSORLG00015007494	trub2	86	51.971	Oryzias_latipes_hsok
ENSMUSG00000039826	Trub2	95	49.462	ENSOMEG00000006702	trub2	84	53.957	Oryzias_melastigma
ENSMUSG00000039826	Trub2	80	79.487	ENSOGAG00000003511	-	95	79.487	Otolemur_garnettii
ENSMUSG00000039826	Trub2	76	80.080	ENSOARG00000003785	-	99	80.080	Ovis_aries
ENSMUSG00000039826	Trub2	99	80.909	ENSOARG00000010579	-	99	80.909	Ovis_aries
ENSMUSG00000039826	Trub2	100	81.571	ENSPPAG00000043146	TRUB2	100	81.571	Pan_paniscus
ENSMUSG00000039826	Trub2	100	78.979	ENSPPRG00000006307	TRUB2	100	78.979	Panthera_pardus
ENSMUSG00000039826	Trub2	100	78.679	ENSPTIG00000012366	TRUB2	100	78.679	Panthera_tigris_altaica
ENSMUSG00000039826	Trub2	100	81.269	ENSPTRG00000021423	TRUB2	100	81.269	Pan_troglodytes
ENSMUSG00000039826	Trub2	100	81.269	ENSPTRG00000052151	-	100	81.269	Pan_troglodytes
ENSMUSG00000039826	Trub2	100	81.269	ENSPANG00000025856	TRUB2	100	81.269	Papio_anubis
ENSMUSG00000039826	Trub2	87	54.118	ENSPKIG00000019769	trub2	91	54.122	Paramormyrops_kingsleyae
ENSMUSG00000039826	Trub2	88	61.301	ENSPSIG00000015701	TRUB2	97	61.301	Pelodiscus_sinensis
ENSMUSG00000039826	Trub2	99	47.179	ENSPMGG00000010206	trub2	90	50.523	Periophthalmus_magnuspinnatus
ENSMUSG00000039826	Trub2	100	89.157	ENSPEMG00000017893	Trub2	100	89.157	Peromyscus_maniculatus_bairdii
ENSMUSG00000039826	Trub2	95	73.482	ENSPCIG00000026731	TRUB2	99	73.482	Phascolarctos_cinereus
ENSMUSG00000039826	Trub2	88	49.708	ENSPFOG00000018018	trub2	75	51.408	Poecilia_formosa
ENSMUSG00000039826	Trub2	88	49.708	ENSPLAG00000010484	trub2	81	51.408	Poecilia_latipinna
ENSMUSG00000039826	Trub2	88	49.123	ENSPMEG00000012913	trub2	84	51.590	Poecilia_mexicana
ENSMUSG00000039826	Trub2	87	48.824	ENSPREG00000002549	trub2	84	50.883	Poecilia_reticulata
ENSMUSG00000039826	Trub2	98	81.288	ENSPPYG00000019650	TRUB2	100	81.288	Pongo_abelii
ENSMUSG00000039826	Trub2	100	79.758	ENSPCAG00000015068	TRUB2	100	79.758	Procavia_capensis
ENSMUSG00000039826	Trub2	100	80.665	ENSPCOG00000017100	TRUB2	100	80.665	Propithecus_coquereli
ENSMUSG00000039826	Trub2	90	82.155	ENSPVAG00000001224	TRUB2	99	82.155	Pteropus_vampyrus
ENSMUSG00000039826	Trub2	95	46.524	ENSPNYG00000013666	trub2	84	52.158	Pundamilia_nyererei
ENSMUSG00000039826	Trub2	98	49.538	ENSPNAG00000017292	trub2	92	49.538	Pygocentrus_nattereri
ENSMUSG00000039826	Trub2	95	92.405	ENSRNOG00000043189	Trub2	98	92.405	Rattus_norvegicus
ENSMUSG00000039826	Trub2	100	74.018	ENSRBIG00000006965	TRUB2	100	74.018	Rhinopithecus_bieti
ENSMUSG00000039826	Trub2	100	81.873	ENSRROG00000042928	TRUB2	100	81.873	Rhinopithecus_roxellana
ENSMUSG00000039826	Trub2	98	81.288	ENSSBOG00000022439	TRUB2	98	81.288	Saimiri_boliviensis_boliviensis
ENSMUSG00000039826	Trub2	87	53.846	ENSSFOG00015013391	trub2	89	56.115	Scleropages_formosus
ENSMUSG00000039826	Trub2	95	50.633	ENSSMAG00000020820	trub2	95	50.633	Scophthalmus_maximus
ENSMUSG00000039826	Trub2	95	47.594	ENSSDUG00000016928	trub2	83	52.518	Seriola_dumerili
ENSMUSG00000039826	Trub2	95	47.594	ENSSLDG00000024701	trub2	83	52.518	Seriola_lalandi_dorsalis
ENSMUSG00000039826	Trub2	90	59.801	ENSSPUG00000015515	TRUB2	90	59.801	Sphenodon_punctatus
ENSMUSG00000039826	Trub2	95	48.663	ENSSPAG00000017865	trub2	84	55.197	Stegastes_partitus
ENSMUSG00000039826	Trub2	100	81.571	ENSSSCG00000005645	TRUB2	99	81.293	Sus_scrofa
ENSMUSG00000039826	Trub2	79	64.885	ENSTGUG00000003704	TRUB2	100	64.885	Taeniopygia_guttata
ENSMUSG00000039826	Trub2	84	49.643	ENSTRUG00000015499	trub2	86	49.643	Takifugu_rubripes
ENSMUSG00000039826	Trub2	97	46.354	ENSTNIG00000014721	trub2	96	52.313	Tetraodon_nigroviridis
ENSMUSG00000039826	Trub2	68	77.778	ENSTBEG00000000586	TRUB2	100	77.778	Tupaia_belangeri
ENSMUSG00000039826	Trub2	100	76.133	ENSTTRG00000016486	TRUB2	100	76.133	Tursiops_truncatus
ENSMUSG00000039826	Trub2	99	80.000	ENSUAMG00000020276	TRUB2	96	80.000	Ursus_americanus
ENSMUSG00000039826	Trub2	99	80.000	ENSUMAG00000022051	TRUB2	96	80.000	Ursus_maritimus
ENSMUSG00000039826	Trub2	91	71.186	ENSVPAG00000005793	TRUB2	99	61.783	Vicugna_pacos
ENSMUSG00000039826	Trub2	92	82.566	ENSVVUG00000013451	TRUB2	86	82.566	Vulpes_vulpes
ENSMUSG00000039826	Trub2	87	60.947	ENSXETG00000003973	trub2	85	64.493	Xenopus_tropicalis
ENSMUSG00000039826	Trub2	95	47.568	ENSXCOG00000008759	trub2	83	52.518	Xiphophorus_couchianus
ENSMUSG00000039826	Trub2	95	47.027	ENSXMAG00000015478	trub2	83	52.518	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005739	mitochondrion	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008033	tRNA processing	-	IEA	Process
GO:0009451	RNA modification	-	IEA	Process
GO:0009982	pseudouridine synthase activity	-	IEA	Function
GO:0016853	isomerase activity	-	IEA	Function
GO:0070131	positive regulation of mitochondrial translation	-	ISO	Process