EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039860 (Gene tree)
Gene ID: 58212
Gene Symbol: Srrm3
Alias: 2900083I11Rik|SRm300-like|Srrm2l
Full Name: serine/arginine repetitive matrix 3
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 67883 bases
Position: chr5:135806890-135874772
Accession: 1920309
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000122821	cwf21	PF08312.12	7.7e-16	1	1
ENSMUSP00000115695	cwf21	PF08312.12	1.6e-14	1	1
ENSMUSP00000115695	SRRM_C	PF15230.6	1.5e-23	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000150566	-	567	-	-	- (aa)	-	-
ENSMUST00000135615	-	681	-	-	- (aa)	-	-
ENSMUST00000146038	-	1995	-	-	- (aa)	-	-
ENSMUST00000144211	-	3932	XM_006504471	ENSMUSP00000115695	648 (aa)	XP_006504534	Q80WV7
ENSMUST00000126232	-	526	-	ENSMUSP00000122821	124 (aa)	-	D3Z3C2
ENSMUST00000013615	-	2289	XM_011240902	ENSMUSP00000013615	342 (aa)	XP_011239204	H7BWX3

Gene Model

Click here to download ENSMUSG00000039860's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039860's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000039860	Srrm3	89	50.833	ENSMUSG00000039218	Srrm2	70	49.580

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039860	Srrm3	100	90.323	ENSG00000177679	SRRM3	96	88.836	Homo_sapiens
ENSMUSG00000039860	Srrm3	88	76.147	ENSACAG00000000452	SRRM3	50	64.336	Anolis_carolinensis
ENSMUSG00000039860	Srrm3	100	93.548	ENSANAG00000031983	SRRM3	60	82.667	Aotus_nancymaae
ENSMUSG00000039860	Srrm3	100	89.516	ENSBTAG00000007879	-	99	81.953	Bos_taurus
ENSMUSG00000039860	Srrm3	100	92.742	ENSCJAG00000016307	SRRM3	96	90.112	Callithrix_jacchus
ENSMUSG00000039860	Srrm3	100	91.129	ENSCAFG00000013537	SRRM3	73	89.965	Canis_familiaris
ENSMUSG00000039860	Srrm3	100	89.516	ENSCHIG00000014018	SRRM3	97	75.260	Capra_hircus
ENSMUSG00000039860	Srrm3	99	77.746	ENSCPOG00000038685	SRRM3	96	81.775	Cavia_porcellus
ENSMUSG00000039860	Srrm3	100	93.548	ENSCCAG00000033359	SRRM3	96	90.112	Cebus_capucinus
ENSMUSG00000039860	Srrm3	100	91.935	ENSCATG00000043129	SRRM3	57	84.894	Cercocebus_atys
ENSMUSG00000039860	Srrm3	100	92.742	ENSCLAG00000007682	SRRM3	100	92.742	Chinchilla_lanigera
ENSMUSG00000039860	Srrm3	100	91.129	ENSCSAG00000018140	SRRM3	97	87.392	Chlorocebus_sabaeus
ENSMUSG00000039860	Srrm3	100	95.161	ENSCGRG00001011385	Srrm3	96	94.534	Cricetulus_griseus_chok1gshd
ENSMUSG00000039860	Srrm3	94	90.598	ENSDNOG00000046922	SRRM3	96	73.844	Dasypus_novemcinctus
ENSMUSG00000039860	Srrm3	100	90.323	ENSEASG00005016840	-	89	90.774	Equus_asinus_asinus
ENSMUSG00000039860	Srrm3	100	89.516	ENSECAG00000022142	-	89	90.746	Equus_caballus
ENSMUSG00000039860	Srrm3	100	91.935	ENSFCAG00000044112	SRRM3	96	87.879	Felis_catus
ENSMUSG00000039860	Srrm3	65	96.296	ENSFDAG00000016913	SRRM3	100	96.296	Fukomys_damarensis
ENSMUSG00000039860	Srrm3	97	75.000	ENSGALG00000001932	SRRM3	65	68.041	Gallus_gallus
ENSMUSG00000039860	Srrm3	90	92.857	ENSGGOG00000036497	-	84	78.571	Gorilla_gorilla
ENSMUSG00000039860	Srrm3	100	90.323	ENSHGLG00000015576	SRRM3	100	90.323	Heterocephalus_glaber_female
ENSMUSG00000039860	Srrm3	100	91.935	ENSSTOG00000014181	SRRM3	100	91.935	Ictidomys_tridecemlineatus
ENSMUSG00000039860	Srrm3	96	81.818	ENSJJAG00000023441	Srrm3	96	82.456	Jaculus_jaculus
ENSMUSG00000039860	Srrm3	100	68.548	ENSMMUG00000046728	SRRM3	58	76.042	Macaca_mulatta
ENSMUSG00000039860	Srrm3	97	75.000	ENSMGAG00000003690	SRRM3	75	66.667	Meleagris_gallopavo
ENSMUSG00000039860	Srrm3	100	94.355	ENSMAUG00000017613	Srrm3	100	94.355	Mesocricetus_auratus
ENSMUSG00000039860	Srrm3	100	93.548	ENSMICG00000010668	SRRM3	95	91.667	Microcebus_murinus
ENSMUSG00000039860	Srrm3	100	95.062	ENSMOCG00000002565	Srrm3	96	95.016	Microtus_ochrogaster
ENSMUSG00000039860	Srrm3	100	100.000	MGP_CAROLIEiJ_G0027845	-	100	99.415	Mus_caroli
ENSMUSG00000039860	Srrm3	100	99.228	MGP_PahariEiJ_G0024425	Srrm3	100	99.228	Mus_pahari
ENSMUSG00000039860	Srrm3	100	99.708	MGP_SPRETEiJ_G0028844	Srrm3	100	99.708	Mus_spretus
ENSMUSG00000039860	Srrm3	100	85.484	ENSNLEG00000008423	-	54	75.298	Nomascus_leucogenys
ENSMUSG00000039860	Srrm3	89	84.545	ENSMEUG00000013994	SRRM3	62	84.545	Notamacropus_eugenii
ENSMUSG00000039860	Srrm3	100	91.935	ENSODEG00000015988	SRRM3	96	88.103	Octodon_degus
ENSMUSG00000039860	Srrm3	98	88.525	ENSOGAG00000030805	SRRM3	96	87.560	Otolemur_garnettii
ENSMUSG00000039860	Srrm3	89	90.909	ENSOARG00000013722	SRRM3	51	81.155	Ovis_aries
ENSMUSG00000039860	Srrm3	100	84.677	ENSPPRG00000006254	SRRM3	74	89.474	Panthera_pardus
ENSMUSG00000039860	Srrm3	100	91.935	ENSPTRG00000019317	SRRM3	96	89.155	Pan_troglodytes
ENSMUSG00000039860	Srrm3	90	93.750	ENSPANG00000000776	SRRM3	71	86.528	Papio_anubis
ENSMUSG00000039860	Srrm3	90	79.464	ENSPSIG00000007850	SRRM3	91	52.517	Pelodiscus_sinensis
ENSMUSG00000039860	Srrm3	100	96.774	ENSPEMG00000012358	-	100	96.774	Peromyscus_maniculatus_bairdii
ENSMUSG00000039860	Srrm3	98	74.702	ENSPCAG00000013700	SRRM3	77	76.190	Procavia_capensis
ENSMUSG00000039860	Srrm3	100	91.935	ENSPCOG00000028464	SRRM3	96	86.922	Propithecus_coquereli
ENSMUSG00000039860	Srrm3	100	90.323	ENSPVAG00000003400	SRRM3	77	93.750	Pteropus_vampyrus
ENSMUSG00000039860	Srrm3	100	96.774	ENSRNOG00000001439	Srrm3	100	96.759	Rattus_norvegicus
ENSMUSG00000039860	Srrm3	100	91.129	ENSRROG00000034980	SRRM3	89	91.092	Rhinopithecus_roxellana
ENSMUSG00000039860	Srrm3	89	79.091	ENSSPUG00000006285	SRRM3	65	79.091	Sphenodon_punctatus
ENSMUSG00000039860	Srrm3	100	86.290	ENSSSCG00000032250	SRRM3	64	86.877	Sus_scrofa
ENSMUSG00000039860	Srrm3	90	91.892	ENSTTRG00000014836	-	62	80.165	Tursiops_truncatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process