EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000039929 (Gene tree)
Gene ID: 207932
Gene Symbol: Urb1
Alias: 4921511H13Rik|5730405K23Rik
Full Name: URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 58887 bases
Position: chr16:90751527-90810413
Accession: 2146468
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000114717	Npa1	PF11707.8	2.2e-85	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000142955	-	2183	-	-	- (aa)	-	-
ENSMUST00000140920	-	7344	XM_006522977	ENSMUSP00000114717	2277 (aa)	XP_006523040	E9PU96
ENSMUST00000128989	-	661	-	-	- (aa)	-	-
ENSMUST00000140158	-	809	-	-	- (aa)	-	-
ENSMUST00000140942	-	1218	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000039929's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000039929's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000039929	Urb1	99	76.533	ENSG00000142207	URB1	99	76.419	Homo_sapiens
ENSMUSG00000039929	Urb1	99	42.422	ENSAPOG00000020308	urb1	99	42.422	Acanthochromis_polyacanthus
ENSMUSG00000039929	Urb1	99	73.592	ENSAMEG00000011998	URB1	99	73.592	Ailuropoda_melanoleuca
ENSMUSG00000039929	Urb1	94	44.217	ENSACIG00000003248	urb1	96	44.290	Amphilophus_citrinellus
ENSMUSG00000039929	Urb1	99	40.375	ENSAOCG00000010364	urb1	99	40.418	Amphiprion_ocellaris
ENSMUSG00000039929	Urb1	99	42.014	ENSAPEG00000010758	urb1	99	42.057	Amphiprion_percula
ENSMUSG00000039929	Urb1	97	43.221	ENSATEG00000011790	urb1	96	43.221	Anabas_testudineus
ENSMUSG00000039929	Urb1	97	54.570	ENSAPLG00000012791	URB1	100	54.615	Anas_platyrhynchos
ENSMUSG00000039929	Urb1	99	51.715	ENSACAG00000002817	URB1	99	51.715	Anolis_carolinensis
ENSMUSG00000039929	Urb1	99	75.858	ENSANAG00000024617	URB1	99	75.858	Aotus_nancymaae
ENSMUSG00000039929	Urb1	99	44.092	ENSACLG00000024865	urb1	99	44.092	Astatotilapia_calliptera
ENSMUSG00000039929	Urb1	99	39.974	ENSAMXG00000012306	urb1	99	39.974	Astyanax_mexicanus
ENSMUSG00000039929	Urb1	99	70.678	ENSBTAG00000012412	URB1	99	70.735	Bos_taurus
ENSMUSG00000039929	Urb1	99	75.538	ENSCJAG00000009118	URB1	99	75.538	Callithrix_jacchus
ENSMUSG00000039929	Urb1	99	74.111	ENSCAFG00000008892	URB1	99	74.111	Canis_familiaris
ENSMUSG00000039929	Urb1	99	73.944	ENSCAFG00020025987	-	99	73.944	Canis_lupus_dingo
ENSMUSG00000039929	Urb1	99	72.975	ENSCAFG00020025994	-	99	72.931	Canis_lupus_dingo
ENSMUSG00000039929	Urb1	99	70.328	ENSCHIG00000015645	URB1	99	70.372	Capra_hircus
ENSMUSG00000039929	Urb1	99	75.528	ENSTSYG00000013286	URB1	99	75.604	Carlito_syrichta
ENSMUSG00000039929	Urb1	98	73.516	ENSCAPG00000015589	URB1	99	73.289	Cavia_aperea
ENSMUSG00000039929	Urb1	99	74.604	ENSCPOG00000006748	URB1	99	74.604	Cavia_porcellus
ENSMUSG00000039929	Urb1	99	76.067	ENSCCAG00000021299	URB1	99	76.067	Cebus_capucinus
ENSMUSG00000039929	Urb1	99	76.287	ENSCATG00000042630	URB1	99	76.287	Cercocebus_atys
ENSMUSG00000039929	Urb1	99	76.012	ENSCLAG00000005262	URB1	99	76.012	Chinchilla_lanigera
ENSMUSG00000039929	Urb1	99	74.989	ENSCSAG00000009584	URB1	99	74.989	Chlorocebus_sabaeus
ENSMUSG00000039929	Urb1	99	56.993	ENSCPBG00000006454	URB1	99	56.993	Chrysemys_picta_bellii
ENSMUSG00000039929	Urb1	99	75.979	ENSCANG00000031088	URB1	99	75.979	Colobus_angolensis_palliatus
ENSMUSG00000039929	Urb1	98	85.950	ENSCGRG00001010616	Urb1	100	85.601	Cricetulus_griseus_chok1gshd
ENSMUSG00000039929	Urb1	98	85.425	ENSCGRG00000015840	Urb1	100	85.425	Cricetulus_griseus_crigri
ENSMUSG00000039929	Urb1	97	47.449	ENSCSEG00000012616	urb1	99	47.449	Cynoglossus_semilaevis
ENSMUSG00000039929	Urb1	92	52.328	ENSCVAG00000009076	urb1	98	51.528	Cyprinodon_variegatus
ENSMUSG00000039929	Urb1	99	42.882	ENSDARG00000060308	urb1	99	43.233	Danio_rerio
ENSMUSG00000039929	Urb1	85	73.760	ENSDNOG00000015586	URB1	99	73.760	Dasypus_novemcinctus
ENSMUSG00000039929	Urb1	99	75.836	ENSDORG00000006735	Urb1	99	75.836	Dipodomys_ordii
ENSMUSG00000039929	Urb1	92	74.545	ENSETEG00000009080	URB1	92	74.545	Echinops_telfairi
ENSMUSG00000039929	Urb1	99	73.295	ENSEASG00005007711	URB1	99	73.295	Equus_asinus_asinus
ENSMUSG00000039929	Urb1	97	81.540	ENSECAG00000013206	URB1	99	81.540	Equus_caballus
ENSMUSG00000039929	Urb1	58	82.158	ENSEEUG00000003626	-	55	82.158	Erinaceus_europaeus
ENSMUSG00000039929	Urb1	98	43.519	ENSELUG00000020516	urb1	98	43.563	Esox_lucius
ENSMUSG00000039929	Urb1	99	73.536	ENSFCAG00000002177	URB1	99	73.536	Felis_catus
ENSMUSG00000039929	Urb1	97	49.934	ENSFALG00000004636	URB1	99	50.154	Ficedula_albicollis
ENSMUSG00000039929	Urb1	99	75.648	ENSFDAG00000007288	URB1	95	75.648	Fukomys_damarensis
ENSMUSG00000039929	Urb1	98	40.935	ENSFHEG00000000202	urb1	98	41.895	Fundulus_heteroclitus
ENSMUSG00000039929	Urb1	90	46.661	ENSGMOG00000001838	urb1	91	46.661	Gadus_morhua
ENSMUSG00000039929	Urb1	99	54.613	ENSGALG00000015887	URB1	99	54.613	Gallus_gallus
ENSMUSG00000039929	Urb1	95	52.461	ENSGAFG00000020694	urb1	98	52.376	Gambusia_affinis
ENSMUSG00000039929	Urb1	98	43.522	ENSGACG00000011703	urb1	99	43.522	Gasterosteus_aculeatus
ENSMUSG00000039929	Urb1	99	56.490	ENSGAGG00000022544	URB1	99	56.490	Gopherus_agassizii
ENSMUSG00000039929	Urb1	99	76.463	ENSGGOG00000000285	URB1	99	76.463	Gorilla_gorilla
ENSMUSG00000039929	Urb1	99	44.048	ENSHBUG00000001904	urb1	99	44.048	Haplochromis_burtoni
ENSMUSG00000039929	Urb1	99	74.187	ENSHGLG00000004907	URB1	99	74.187	Heterocephalus_glaber_female
ENSMUSG00000039929	Urb1	99	74.637	ENSHGLG00100010749	URB1	99	74.637	Heterocephalus_glaber_male
ENSMUSG00000039929	Urb1	72	46.705	ENSHCOG00000018683	urb1	97	47.093	Hippocampus_comes
ENSMUSG00000039929	Urb1	99	39.643	ENSIPUG00000014721	urb1	99	39.601	Ictalurus_punctatus
ENSMUSG00000039929	Urb1	99	76.134	ENSSTOG00000004539	URB1	99	76.134	Ictidomys_tridecemlineatus
ENSMUSG00000039929	Urb1	98	45.064	ENSKMAG00000006001	urb1	98	46.564	Kryptolebias_marmoratus
ENSMUSG00000039929	Urb1	97	40.696	ENSLBEG00000027208	urb1	99	49.577	Labrus_bergylta
ENSMUSG00000039929	Urb1	99	47.193	ENSLACG00000017059	URB1	100	47.239	Latimeria_chalumnae
ENSMUSG00000039929	Urb1	97	45.209	ENSLOCG00000009190	urb1	97	45.209	Lepisosteus_oculatus
ENSMUSG00000039929	Urb1	99	71.685	ENSLAFG00000010407	URB1	100	71.685	Loxodonta_africana
ENSMUSG00000039929	Urb1	99	76.111	ENSMFAG00000034391	URB1	97	76.111	Macaca_fascicularis
ENSMUSG00000039929	Urb1	99	75.979	ENSMMUG00000010295	URB1	99	75.979	Macaca_mulatta
ENSMUSG00000039929	Urb1	99	74.670	ENSMNEG00000032981	URB1	99	74.670	Macaca_nemestrina
ENSMUSG00000039929	Urb1	99	76.199	ENSMLEG00000041435	URB1	99	76.199	Mandrillus_leucophaeus
ENSMUSG00000039929	Urb1	99	41.652	ENSMAMG00000011238	urb1	99	41.652	Mastacembelus_armatus
ENSMUSG00000039929	Urb1	99	41.388	ENSMZEG00005011862	urb1	99	41.388	Maylandia_zebra
ENSMUSG00000039929	Urb1	98	54.776	ENSMGAG00000014512	URB1	99	54.776	Meleagris_gallopavo
ENSMUSG00000039929	Urb1	93	83.504	ENSMAUG00000010516	Urb1	100	83.650	Mesocricetus_auratus
ENSMUSG00000039929	Urb1	99	75.495	ENSMICG00000016424	URB1	99	75.495	Microcebus_murinus
ENSMUSG00000039929	Urb1	100	84.811	ENSMOCG00000012613	Urb1	99	84.811	Microtus_ochrogaster
ENSMUSG00000039929	Urb1	99	61.084	ENSMODG00000021076	URB1	99	61.084	Monodelphis_domestica
ENSMUSG00000039929	Urb1	96	42.753	ENSMALG00000017411	urb1	97	51.366	Monopterus_albus
ENSMUSG00000039929	Urb1	99	97.188	MGP_CAROLIEiJ_G0020948	Urb1	99	97.188	Mus_caroli
ENSMUSG00000039929	Urb1	99	95.035	MGP_PahariEiJ_G0016653	Urb1	99	95.035	Mus_pahari
ENSMUSG00000039929	Urb1	100	98.463	MGP_SPRETEiJ_G0021854	Urb1	100	98.463	Mus_spretus
ENSMUSG00000039929	Urb1	99	73.119	ENSMPUG00000001123	URB1	99	73.119	Mustela_putorius_furo
ENSMUSG00000039929	Urb1	99	77.602	ENSNGAG00000001905	Urb1	100	77.602	Nannospalax_galili
ENSMUSG00000039929	Urb1	81	44.621	ENSNBRG00000001049	urb1	99	44.720	Neolamprologus_brichardi
ENSMUSG00000039929	Urb1	99	74.460	ENSNLEG00000026872	URB1	99	74.351	Nomascus_leucogenys
ENSMUSG00000039929	Urb1	95	56.622	ENSMEUG00000010828	URB1	96	56.814	Notamacropus_eugenii
ENSMUSG00000039929	Urb1	99	68.176	ENSOPRG00000013482	URB1	100	68.176	Ochotona_princeps
ENSMUSG00000039929	Urb1	99	74.384	ENSODEG00000002587	URB1	99	74.384	Octodon_degus
ENSMUSG00000039929	Urb1	99	44.143	ENSONIG00000005599	urb1	99	44.143	Oreochromis_niloticus
ENSMUSG00000039929	Urb1	99	74.108	ENSOCUG00000009381	URB1	99	74.108	Oryctolagus_cuniculus
ENSMUSG00000039929	Urb1	99	43.014	ENSORLG00000003429	urb1	99	43.014	Oryzias_latipes
ENSMUSG00000039929	Urb1	99	43.045	ENSORLG00020013785	urb1	99	43.045	Oryzias_latipes_hni
ENSMUSG00000039929	Urb1	99	41.765	ENSORLG00015019421	urb1	97	45.979	Oryzias_latipes_hsok
ENSMUSG00000039929	Urb1	76	49.707	ENSOMEG00000002094	urb1	97	49.707	Oryzias_melastigma
ENSMUSG00000039929	Urb1	99	75.088	ENSOGAG00000017140	URB1	99	75.088	Otolemur_garnettii
ENSMUSG00000039929	Urb1	97	72.143	ENSOARG00000013679	URB1	99	72.143	Ovis_aries
ENSMUSG00000039929	Urb1	99	76.727	ENSPPAG00000003423	URB1	99	76.727	Pan_paniscus
ENSMUSG00000039929	Urb1	99	73.865	ENSPPRG00000023131	URB1	99	73.865	Panthera_pardus
ENSMUSG00000039929	Urb1	91	72.750	ENSPTIG00000016125	URB1	98	72.750	Panthera_tigris_altaica
ENSMUSG00000039929	Urb1	99	76.595	ENSPTRG00000013852	URB1	99	76.595	Pan_troglodytes
ENSMUSG00000039929	Urb1	99	76.331	ENSPANG00000021964	URB1	99	76.331	Papio_anubis
ENSMUSG00000039929	Urb1	98	45.499	ENSPKIG00000003683	urb1	98	45.551	Paramormyrops_kingsleyae
ENSMUSG00000039929	Urb1	99	85.821	ENSPEMG00000021205	Urb1	99	85.821	Peromyscus_maniculatus_bairdii
ENSMUSG00000039929	Urb1	77	33.333	ENSPMAG00000009733	URB1	100	33.019	Petromyzon_marinus
ENSMUSG00000039929	Urb1	99	60.955	ENSPCIG00000016350	URB1	99	61.106	Phascolarctos_cinereus
ENSMUSG00000039929	Urb1	95	42.864	ENSPLAG00000004371	urb1	99	42.864	Poecilia_latipinna
ENSMUSG00000039929	Urb1	99	43.463	ENSPMEG00000006634	urb1	99	43.463	Poecilia_mexicana
ENSMUSG00000039929	Urb1	98	43.791	ENSPREG00000013453	urb1	98	43.791	Poecilia_reticulata
ENSMUSG00000039929	Urb1	99	76.136	ENSPPYG00000011359	URB1	99	76.023	Pongo_abelii
ENSMUSG00000039929	Urb1	99	62.808	ENSPCAG00000007430	URB1	99	62.808	Procavia_capensis
ENSMUSG00000039929	Urb1	99	76.188	ENSPCOG00000022695	URB1	99	76.287	Propithecus_coquereli
ENSMUSG00000039929	Urb1	99	72.239	ENSPVAG00000000889	URB1	99	72.239	Pteropus_vampyrus
ENSMUSG00000039929	Urb1	99	42.946	ENSPNYG00000010589	urb1	99	42.946	Pundamilia_nyererei
ENSMUSG00000039929	Urb1	99	39.530	ENSPNAG00000019324	urb1	99	39.634	Pygocentrus_nattereri
ENSMUSG00000039929	Urb1	99	90.865	ENSRNOG00000002080	Urb1	99	90.997	Rattus_norvegicus
ENSMUSG00000039929	Urb1	99	75.803	ENSRBIG00000033122	URB1	99	75.803	Rhinopithecus_bieti
ENSMUSG00000039929	Urb1	99	75.847	ENSRROG00000040237	URB1	99	75.847	Rhinopithecus_roxellana
ENSMUSG00000039929	Urb1	99	76.385	ENSSBOG00000027672	URB1	99	76.385	Saimiri_boliviensis_boliviensis
ENSMUSG00000039929	Urb1	99	60.866	ENSSHAG00000005140	URB1	100	60.856	Sarcophilus_harrisii
ENSMUSG00000039929	Urb1	92	45.651	ENSSFOG00015000339	urb1	99	45.673	Scleropages_formosus
ENSMUSG00000039929	Urb1	99	43.139	ENSSMAG00000003782	urb1	99	42.832	Scophthalmus_maximus
ENSMUSG00000039929	Urb1	99	43.393	ENSSDUG00000012313	urb1	99	43.393	Seriola_dumerili
ENSMUSG00000039929	Urb1	99	43.499	ENSSLDG00000023179	urb1	99	43.499	Seriola_lalandi_dorsalis
ENSMUSG00000039929	Urb1	99	53.267	ENSSPUG00000012447	URB1	99	53.267	Sphenodon_punctatus
ENSMUSG00000039929	Urb1	99	43.703	ENSSPAG00000006325	urb1	99	43.703	Stegastes_partitus
ENSMUSG00000039929	Urb1	99	72.420	ENSSSCG00000032024	URB1	99	72.420	Sus_scrofa
ENSMUSG00000039929	Urb1	73	56.768	ENSTGUG00000013442	URB1	100	56.768	Taeniopygia_guttata
ENSMUSG00000039929	Urb1	98	43.419	ENSTRUG00000009372	urb1	98	43.236	Takifugu_rubripes
ENSMUSG00000039929	Urb1	99	42.507	ENSTNIG00000016277	urb1	99	42.375	Tetraodon_nigroviridis
ENSMUSG00000039929	Urb1	81	79.539	ENSTBEG00000010044	URB1	81	79.539	Tupaia_belangeri
ENSMUSG00000039929	Urb1	90	74.739	ENSTTRG00000007712	URB1	92	74.843	Tursiops_truncatus
ENSMUSG00000039929	Urb1	99	73.636	ENSUAMG00000012231	URB1	99	73.636	Ursus_americanus
ENSMUSG00000039929	Urb1	91	75.522	ENSUMAG00000017419	URB1	97	75.699	Ursus_maritimus
ENSMUSG00000039929	Urb1	68	84.921	ENSVPAG00000001164	URB1	68	84.921	Vicugna_pacos
ENSMUSG00000039929	Urb1	99	73.923	ENSVVUG00000000551	URB1	99	73.923	Vulpes_vulpes
ENSMUSG00000039929	Urb1	99	48.465	ENSXETG00000009895	urb1	99	48.465	Xenopus_tropicalis
ENSMUSG00000039929	Urb1	99	41.161	ENSXCOG00000005500	urb1	99	41.161	Xiphophorus_couchianus
ENSMUSG00000039929	Urb1	99	41.270	ENSXMAG00000007253	urb1	99	41.270	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0001650	fibrillar center	-	ISO	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component