EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000040025 (Gene tree)
Gene ID: 213541
Gene Symbol: Ythdf2
Alias: 9430020E02Rik|HGRG8|NY-REN-2
Full Name: YTH N6-methyladenosine RNA binding protein 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 27392 bases
Position: chr4:132184912-132212303
Accession: 2444233
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000120414	YTH	PF04146.15	3.8e-41	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000085181	-	955	-	ENSMUSP00000082275	51 (aa)	-	E9PW90
ENSMUST00000102570	-	2536	-	-	- (aa)	-	-
ENSMUST00000152796	-	4129	-	ENSMUSP00000120414	579 (aa)	-	Q91YT7
ENSMUST00000165072	-	520	-	ENSMUSP00000129225	100 (aa)	-	F6Y6H7

Gene Model

Click here to download ENSMUSG00000040025's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000040025's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000040025	Ythdf2	100	63.043	ENSMUSG00000038848	Ythdf1	99	64.189

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000040025	Ythdf2	100	99.655	ENSG00000198492	YTHDF2	100	100.000	Homo_sapiens
ENSMUSG00000040025	Ythdf2	99	73.942	ENSAPOG00000014633	ythdf2	99	74.112	Acanthochromis_polyacanthus
ENSMUSG00000040025	Ythdf2	99	98.261	ENSAMEG00000011429	YTHDF2	99	98.261	Ailuropoda_melanoleuca
ENSMUSG00000040025	Ythdf2	99	74.619	ENSACIG00000005932	ythdf2	99	73.773	Amphilophus_citrinellus
ENSMUSG00000040025	Ythdf2	97	73.191	ENSAOCG00000016152	ythdf2	97	91.579	Amphiprion_ocellaris
ENSMUSG00000040025	Ythdf2	97	73.355	ENSAPEG00000017652	ythdf2	97	91.579	Amphiprion_percula
ENSMUSG00000040025	Ythdf2	99	73.266	ENSATEG00000012120	ythdf2	99	73.435	Anabas_testudineus
ENSMUSG00000040025	Ythdf2	100	91.050	ENSACAG00000010846	YTHDF2	100	91.222	Anolis_carolinensis
ENSMUSG00000040025	Ythdf2	100	99.136	ENSANAG00000032408	YTHDF2	100	99.136	Aotus_nancymaae
ENSMUSG00000040025	Ythdf2	97	74.165	ENSAMXG00000029759	ythdf2	96	74.301	Astyanax_mexicanus
ENSMUSG00000040025	Ythdf2	100	99.138	ENSBTAG00000015771	YTHDF2	100	99.138	Bos_taurus
ENSMUSG00000040025	Ythdf2	100	99.309	ENSCJAG00000009804	YTHDF2	100	99.309	Callithrix_jacchus
ENSMUSG00000040025	Ythdf2	100	97.599	ENSCAFG00000011700	YTHDF2	100	98.868	Canis_familiaris
ENSMUSG00000040025	Ythdf2	91	98.868	ENSCAFG00020023623	YTHDF2	100	98.868	Canis_lupus_dingo
ENSMUSG00000040025	Ythdf2	100	99.138	ENSCHIG00000022985	YTHDF2	100	99.138	Capra_hircus
ENSMUSG00000040025	Ythdf2	100	99.309	ENSTSYG00000004178	YTHDF2	100	99.309	Carlito_syrichta
ENSMUSG00000040025	Ythdf2	78	96.774	ENSCAPG00000014520	YTHDF2	79	96.774	Cavia_aperea
ENSMUSG00000040025	Ythdf2	99	91.638	ENSCPOG00000019907	YTHDF2	98	91.638	Cavia_porcellus
ENSMUSG00000040025	Ythdf2	100	99.482	ENSCCAG00000027370	YTHDF2	100	99.482	Cebus_capucinus
ENSMUSG00000040025	Ythdf2	100	99.482	ENSCATG00000044332	YTHDF2	100	99.482	Cercocebus_atys
ENSMUSG00000040025	Ythdf2	99	97.727	ENSCLAG00000007438	YTHDF2	98	97.727	Chinchilla_lanigera
ENSMUSG00000040025	Ythdf2	100	99.655	ENSCSAG00000001018	YTHDF2	100	99.655	Chlorocebus_sabaeus
ENSMUSG00000040025	Ythdf2	100	98.793	ENSCHOG00000000357	YTHDF2	100	98.793	Choloepus_hoffmanni
ENSMUSG00000040025	Ythdf2	100	96.034	ENSCPBG00000011221	YTHDF2	100	96.034	Chrysemys_picta_bellii
ENSMUSG00000040025	Ythdf2	98	98.946	ENSCANG00000016001	YTHDF2	100	99.622	Colobus_angolensis_palliatus
ENSMUSG00000040025	Ythdf2	100	98.964	ENSCGRG00001016726	Ythdf2	100	98.964	Cricetulus_griseus_chok1gshd
ENSMUSG00000040025	Ythdf2	97	98.752	ENSCGRG00000013563	Ythdf2	100	98.752	Cricetulus_griseus_crigri
ENSMUSG00000040025	Ythdf2	99	72.542	ENSCSEG00000002716	ythdf2	100	72.203	Cynoglossus_semilaevis
ENSMUSG00000040025	Ythdf2	98	73.070	ENSCVAG00000015233	ythdf2	98	73.540	Cyprinodon_variegatus
ENSMUSG00000040025	Ythdf2	97	74.701	ENSDARG00000014498	ythdf2	96	74.415	Danio_rerio
ENSMUSG00000040025	Ythdf2	99	98.778	ENSDNOG00000033903	YTHDF2	97	98.778	Dasypus_novemcinctus
ENSMUSG00000040025	Ythdf2	100	99.827	ENSDORG00000016564	Ythdf2	100	99.827	Dipodomys_ordii
ENSMUSG00000040025	Ythdf2	98	99.124	ENSETEG00000017614	YTHDF2	100	99.124	Echinops_telfairi
ENSMUSG00000040025	Ythdf2	97	52.206	ENSEBUG00000002410	ythdf2	79	73.361	Eptatretus_burgeri
ENSMUSG00000040025	Ythdf2	100	98.966	ENSEASG00005010152	YTHDF2	100	98.966	Equus_asinus_asinus
ENSMUSG00000040025	Ythdf2	100	98.966	ENSECAG00000023108	YTHDF2	100	98.966	Equus_caballus
ENSMUSG00000040025	Ythdf2	85	100.000	ENSEEUG00000011398	YTHDF2	85	100.000	Erinaceus_europaeus
ENSMUSG00000040025	Ythdf2	85	91.667	ENSELUG00000014969	ythdf2	96	91.667	Esox_lucius
ENSMUSG00000040025	Ythdf2	100	98.276	ENSFCAG00000012446	YTHDF2	100	98.276	Felis_catus
ENSMUSG00000040025	Ythdf2	100	90.517	ENSFALG00000001381	YTHDF2	100	91.207	Ficedula_albicollis
ENSMUSG00000040025	Ythdf2	98	99.298	ENSFDAG00000021409	YTHDF2	100	99.298	Fukomys_damarensis
ENSMUSG00000040025	Ythdf2	100	73.378	ENSFHEG00000000837	ythdf2	100	73.223	Fundulus_heteroclitus
ENSMUSG00000040025	Ythdf2	99	72.222	ENSGMOG00000018778	ythdf2	99	71.803	Gadus_morhua
ENSMUSG00000040025	Ythdf2	100	93.103	ENSGALG00000034831	YTHDF2	100	93.103	Gallus_gallus
ENSMUSG00000040025	Ythdf2	97	72.607	ENSGAFG00000002656	ythdf2	95	73.052	Gambusia_affinis
ENSMUSG00000040025	Ythdf2	100	74.622	ENSGACG00000009603	ythdf2	100	74.707	Gasterosteus_aculeatus
ENSMUSG00000040025	Ythdf2	99	96.335	ENSGAGG00000004897	YTHDF2	96	96.335	Gopherus_agassizii
ENSMUSG00000040025	Ythdf2	100	99.483	ENSGGOG00000024069	YTHDF2	100	99.483	Gorilla_gorilla
ENSMUSG00000040025	Ythdf2	97	74.655	ENSHBUG00000007355	ythdf2	97	73.966	Haplochromis_burtoni
ENSMUSG00000040025	Ythdf2	88	77.059	ENSHGLG00000006605	-	90	77.059	Heterocephalus_glaber_female
ENSMUSG00000040025	Ythdf2	100	99.482	ENSHGLG00000009933	YTHDF2	100	99.482	Heterocephalus_glaber_female
ENSMUSG00000040025	Ythdf2	88	77.059	ENSHGLG00100016422	-	90	77.059	Heterocephalus_glaber_male
ENSMUSG00000040025	Ythdf2	98	99.474	ENSHGLG00100015127	YTHDF2	100	99.474	Heterocephalus_glaber_male
ENSMUSG00000040025	Ythdf2	97	72.562	ENSHCOG00000015814	ythdf2	96	73.052	Hippocampus_comes
ENSMUSG00000040025	Ythdf2	99	71.912	ENSIPUG00000011114	ythdf2	95	71.404	Ictalurus_punctatus
ENSMUSG00000040025	Ythdf2	100	99.309	ENSSTOG00000025075	YTHDF2	100	99.309	Ictidomys_tridecemlineatus
ENSMUSG00000040025	Ythdf2	100	99.827	ENSJJAG00000013745	Ythdf2	100	99.827	Jaculus_jaculus
ENSMUSG00000040025	Ythdf2	97	71.593	ENSKMAG00000009833	ythdf2	97	90.674	Kryptolebias_marmoratus
ENSMUSG00000040025	Ythdf2	99	73.083	ENSLBEG00000004069	ythdf2	98	73.159	Labrus_bergylta
ENSMUSG00000040025	Ythdf2	100	83.677	ENSLACG00000011489	YTHDF2	100	83.849	Latimeria_chalumnae
ENSMUSG00000040025	Ythdf2	97	74.118	ENSLOCG00000005362	ythdf2	96	76.073	Lepisosteus_oculatus
ENSMUSG00000040025	Ythdf2	99	98.435	ENSLAFG00000030451	YTHDF2	100	98.435	Loxodonta_africana
ENSMUSG00000040025	Ythdf2	100	99.655	ENSMFAG00000026128	YTHDF2	100	99.655	Macaca_fascicularis
ENSMUSG00000040025	Ythdf2	100	99.655	ENSMMUG00000011391	YTHDF2	100	99.655	Macaca_mulatta
ENSMUSG00000040025	Ythdf2	100	99.655	ENSMNEG00000041161	YTHDF2	100	99.655	Macaca_nemestrina
ENSMUSG00000040025	Ythdf2	98	99.120	ENSMLEG00000030371	YTHDF2	100	99.622	Mandrillus_leucophaeus
ENSMUSG00000040025	Ythdf2	97	71.757	ENSMAMG00000006782	ythdf2	97	91.579	Mastacembelus_armatus
ENSMUSG00000040025	Ythdf2	97	74.655	ENSMZEG00005004307	ythdf2	97	73.966	Maylandia_zebra
ENSMUSG00000040025	Ythdf2	80	96.250	ENSMGAG00000001610	YTHDF2	93	96.250	Meleagris_gallopavo
ENSMUSG00000040025	Ythdf2	94	97.059	ENSMAUG00000002009	Ythdf2	97	94.004	Mesocricetus_auratus
ENSMUSG00000040025	Ythdf2	100	99.827	ENSMICG00000003729	YTHDF2	100	99.827	Microcebus_murinus
ENSMUSG00000040025	Ythdf2	99	99.301	ENSMOCG00000018361	Ythdf2	100	99.301	Microtus_ochrogaster
ENSMUSG00000040025	Ythdf2	97	67.668	ENSMMOG00000010124	ythdf2	97	91.579	Mola_mola
ENSMUSG00000040025	Ythdf2	100	96.041	ENSMODG00000010973	YTHDF2	100	96.041	Monodelphis_domestica
ENSMUSG00000040025	Ythdf2	99	73.311	ENSMALG00000013692	ythdf2	99	73.604	Monopterus_albus
ENSMUSG00000040025	Ythdf2	94	98.897	MGP_PahariEiJ_G0028892	Ythdf2	99	98.897	Mus_pahari
ENSMUSG00000040025	Ythdf2	100	99.138	ENSMPUG00000015501	YTHDF2	100	99.138	Mustela_putorius_furo
ENSMUSG00000040025	Ythdf2	100	97.931	ENSMLUG00000012606	YTHDF2	99	97.931	Myotis_lucifugus
ENSMUSG00000040025	Ythdf2	100	99.136	ENSNGAG00000014432	Ythdf2	100	99.136	Nannospalax_galili
ENSMUSG00000040025	Ythdf2	99	75.804	ENSNBRG00000024009	ythdf2	99	75.127	Neolamprologus_brichardi
ENSMUSG00000040025	Ythdf2	100	99.655	ENSNLEG00000009856	YTHDF2	100	99.655	Nomascus_leucogenys
ENSMUSG00000040025	Ythdf2	52	93.729	ENSMEUG00000016488	-	100	94.389	Notamacropus_eugenii
ENSMUSG00000040025	Ythdf2	83	98.391	ENSOPRG00000017111	YTHDF2	83	98.391	Ochotona_princeps
ENSMUSG00000040025	Ythdf2	91	84.659	ENSODEG00000017508	-	99	84.659	Octodon_degus
ENSMUSG00000040025	Ythdf2	76	99.320	ENSODEG00000002437	-	94	99.320	Octodon_degus
ENSMUSG00000040025	Ythdf2	99	76.531	ENSONIG00000003485	ythdf2	96	76.280	Oreochromis_niloticus
ENSMUSG00000040025	Ythdf2	70	95.960	ENSOANG00000006124	YTHDF2	96	95.960	Ornithorhynchus_anatinus
ENSMUSG00000040025	Ythdf2	100	99.482	ENSOCUG00000010612	YTHDF2	100	99.482	Oryctolagus_cuniculus
ENSMUSG00000040025	Ythdf2	97	70.199	ENSORLG00000014323	ythdf2	96	72.033	Oryzias_latipes
ENSMUSG00000040025	Ythdf2	97	69.868	ENSORLG00020013978	ythdf2	95	71.591	Oryzias_latipes_hni
ENSMUSG00000040025	Ythdf2	98	72.945	ENSORLG00015012539	ythdf2	96	71.753	Oryzias_latipes_hsok
ENSMUSG00000040025	Ythdf2	97	71.382	ENSOMEG00000011398	ythdf2	96	71.359	Oryzias_melastigma
ENSMUSG00000040025	Ythdf2	100	99.309	ENSOGAG00000014648	YTHDF2	100	99.309	Otolemur_garnettii
ENSMUSG00000040025	Ythdf2	98	97.368	ENSOARG00000002698	YTHDF2	100	99.057	Ovis_aries
ENSMUSG00000040025	Ythdf2	100	99.482	ENSPPAG00000032722	YTHDF2	100	99.482	Pan_paniscus
ENSMUSG00000040025	Ythdf2	100	98.621	ENSPPRG00000005205	YTHDF2	100	98.621	Panthera_pardus
ENSMUSG00000040025	Ythdf2	92	98.507	ENSPTIG00000013201	YTHDF2	100	98.491	Panthera_tigris_altaica
ENSMUSG00000040025	Ythdf2	100	99.655	ENSPTRG00000000439	YTHDF2	100	99.655	Pan_troglodytes
ENSMUSG00000040025	Ythdf2	76	100.000	ENSPANG00000006550	YTHDF2	98	100.000	Papio_anubis
ENSMUSG00000040025	Ythdf2	99	74.667	ENSPKIG00000008986	ythdf2	98	74.915	Paramormyrops_kingsleyae
ENSMUSG00000040025	Ythdf2	99	94.107	ENSPSIG00000016583	YTHDF2	99	94.107	Pelodiscus_sinensis
ENSMUSG00000040025	Ythdf2	96	72.835	ENSPMGG00000004077	ythdf2	95	72.351	Periophthalmus_magnuspinnatus
ENSMUSG00000040025	Ythdf2	100	99.136	ENSPEMG00000014903	Ythdf2	100	99.136	Peromyscus_maniculatus_bairdii
ENSMUSG00000040025	Ythdf2	99	57.971	ENSPMAG00000007948	ythdf2	99	60.331	Petromyzon_marinus
ENSMUSG00000040025	Ythdf2	100	95.009	ENSPCIG00000022413	YTHDF2	100	95.181	Phascolarctos_cinereus
ENSMUSG00000040025	Ythdf2	97	72.158	ENSPFOG00000004455	ythdf2	96	72.859	Poecilia_formosa
ENSMUSG00000040025	Ythdf2	98	73.630	ENSPLAG00000009752	ythdf2	98	73.549	Poecilia_latipinna
ENSMUSG00000040025	Ythdf2	99	72.006	ENSPMEG00000014660	ythdf2	99	72.609	Poecilia_mexicana
ENSMUSG00000040025	Ythdf2	98	74.660	ENSPREG00000019412	ythdf2	98	75.424	Poecilia_reticulata
ENSMUSG00000040025	Ythdf2	84	99.384	ENSPPYG00000001634	YTHDF2	99	99.384	Pongo_abelii
ENSMUSG00000040025	Ythdf2	100	98.103	ENSPCAG00000007587	YTHDF2	100	98.103	Procavia_capensis
ENSMUSG00000040025	Ythdf2	99	97.735	ENSPCOG00000010131	YTHDF2	98	97.735	Propithecus_coquereli
ENSMUSG00000040025	Ythdf2	100	98.793	ENSPVAG00000017224	YTHDF2	100	98.793	Pteropus_vampyrus
ENSMUSG00000040025	Ythdf2	97	74.355	ENSPNYG00000018403	ythdf2	97	73.129	Pundamilia_nyererei
ENSMUSG00000040025	Ythdf2	97	73.854	ENSPNAG00000001061	ythdf2	96	73.588	Pygocentrus_nattereri
ENSMUSG00000040025	Ythdf2	94	99.634	ENSRNOG00000010892	Ythdf2	94	99.634	Rattus_norvegicus
ENSMUSG00000040025	Ythdf2	100	99.655	ENSRBIG00000043898	YTHDF2	100	99.655	Rhinopithecus_bieti
ENSMUSG00000040025	Ythdf2	100	99.655	ENSRROG00000038863	YTHDF2	100	99.655	Rhinopithecus_roxellana
ENSMUSG00000040025	Ythdf2	100	99.482	ENSSBOG00000034045	YTHDF2	100	99.482	Saimiri_boliviensis_boliviensis
ENSMUSG00000040025	Ythdf2	98	93.860	ENSSHAG00000009502	YTHDF2	100	95.292	Sarcophilus_harrisii
ENSMUSG00000040025	Ythdf2	97	74.407	ENSSFOG00015001525	ythdf2	96	75.125	Scleropages_formosus
ENSMUSG00000040025	Ythdf2	97	72.978	ENSSMAG00000019678	ythdf2	98	73.973	Scophthalmus_maximus
ENSMUSG00000040025	Ythdf2	99	73.129	ENSSDUG00000016335	ythdf2	99	73.299	Seriola_dumerili
ENSMUSG00000040025	Ythdf2	99	73.986	ENSSLDG00000019751	ythdf2	99	73.942	Seriola_lalandi_dorsalis
ENSMUSG00000040025	Ythdf2	100	95.377	ENSSARG00000001187	YTHDF2	100	95.377	Sorex_araneus
ENSMUSG00000040025	Ythdf2	100	95.517	ENSSPUG00000010274	YTHDF2	100	95.517	Sphenodon_punctatus
ENSMUSG00000040025	Ythdf2	97	72.442	ENSSPAG00000017103	ythdf2	96	72.727	Stegastes_partitus
ENSMUSG00000040025	Ythdf2	100	98.966	ENSSSCG00000027686	YTHDF2	100	98.966	Sus_scrofa
ENSMUSG00000040025	Ythdf2	91	87.524	ENSTGUG00000017347	YTHDF2	99	89.603	Taeniopygia_guttata
ENSMUSG00000040025	Ythdf2	97	73.256	ENSTRUG00000011923	ythdf2	96	73.127	Takifugu_rubripes
ENSMUSG00000040025	Ythdf2	97	73.928	ENSTNIG00000017263	ythdf2	97	73.413	Tetraodon_nigroviridis
ENSMUSG00000040025	Ythdf2	92	91.402	ENSTBEG00000009072	YTHDF2	100	91.402	Tupaia_belangeri
ENSMUSG00000040025	Ythdf2	99	98.778	ENSTTRG00000013603	YTHDF2	100	98.778	Tursiops_truncatus
ENSMUSG00000040025	Ythdf2	100	98.966	ENSUAMG00000008774	YTHDF2	100	98.966	Ursus_americanus
ENSMUSG00000040025	Ythdf2	91	98.868	ENSUMAG00000011040	YTHDF2	100	98.868	Ursus_maritimus
ENSMUSG00000040025	Ythdf2	75	93.593	ENSVPAG00000006783	YTHDF2	76	93.593	Vicugna_pacos
ENSMUSG00000040025	Ythdf2	100	98.966	ENSVVUG00000012648	YTHDF2	100	98.966	Vulpes_vulpes
ENSMUSG00000040025	Ythdf2	99	64.410	ENSXETG00000020636	ythdf2	99	64.236	Xenopus_tropicalis
ENSMUSG00000040025	Ythdf2	99	72.955	ENSXCOG00000004960	ythdf2	99	73.877	Xiphophorus_couchianus
ENSMUSG00000040025	Ythdf2	97	71.947	ENSXMAG00000018758	ythdf2	96	72.890	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	-	ISO	Component
GO:0001556	oocyte maturation	28867294.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	28867294.	IDA	Component
GO:0005815	microtubule organizing center	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0030154	cell differentiation	-	IEA	Process
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0043488	regulation of mRNA stability	-	ISO	Process
GO:0048477	oogenesis	-	IEA	Process
GO:0061157	mRNA destabilization	-	ISO	Process
GO:1903538	regulation of meiotic cell cycle process involved in oocyte maturation	28867294.	IMP	Process
GO:1903679	positive regulation of cap-independent translational initiation	-	ISO	Process
GO:1990247	N6-methyladenosine-containing RNA binding	-	ISO	Function